@sjcrh/proteinpaint-types 2.138.3-7 → 2.139.0

package/dist/index.js

@@ -122,7 +122,7 @@ import {
   percentilePayload,
   validPercentileRequest,
   validPercentileResponse
-} from "./chunk-R3DIKDES.js";
+} from "./chunk-4S36DRJ4.js";
 import {
   isoformlstPayload,
   validIsoformLstRequest,

package/dist/termdb.percentile.js

@@ -2,7 +2,7 @@ import {
   percentilePayload,
   validPercentileRequest,
   validPercentileResponse
-} from "./chunk-R3DIKDES.js";
+} from "./chunk-4S36DRJ4.js";
 import "./chunk-CNSSF43V.js";
 export {
   percentilePayload,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-types",
-  "version": "2.138.3-7",
+  "version": "2.139.0",
   "type": "module",
   "description": "Shared type definitions between ProteinPaint server and client code",
   "main": "src/index.ts",

package/src/routes/termdb.percentile.ts

@@ -1,5 +1,6 @@
 import type { RoutePayload } from './routeApi.js'
 import type { Filter } from '../filter.ts'
+import type { Term } from '../terms/term.ts'
 
 export type PercentileRequest = {
 	/** a user-defined genome label in the serverconfig.json, hg38, hg19, mm10, etc */
@@ -9,8 +10,9 @@ export type PercentileRequest = {
 	embedder: string
 	getpercentile: number[]
 	/** term id string */
-	tid: string
-	filter: Filter
+	term: Term
+	filter?: Filter
+	filter0?: any
 }
 
 export type PercentileResponse = {
@@ -32,7 +34,7 @@ export const percentilePayload: RoutePayload = {
 					dslabel: 'TermdbTest',
 					embedder: 'localhost',
 					getpercentile: [50],
-					tid: 'agedx',
+					term: { id: 'agedx' },
 					filter: {
 						type: 'tvslst',
 						in: true,

package/src/terms/geneExpression.ts

@@ -10,7 +10,10 @@ GeneExpressionTermSettingInstance
 
 */
 
-export type GeneExpressionQ = NumericQ & { dt?: number }
+export type GeneExpressionQ = NumericQ & {
+	dt?: number
+	preferredBins?: string
+}
 
 export type GeneExpressionTW = TermWrapper & {
 	q: GeneExpressionQ

package/src/vocab.ts

@@ -19,7 +19,7 @@ export type VocabApi = {
 	findTerm: (f: string, activeCohort: number, usecase: UseCase, x: string) => { lst: Term[] }
 	getCategories: (term: Term, filter?: Filter, body?: any) => any
 	getCustomTermQLst: (f: Term) => any
-	getPercentile: (term_id: string | number, percentile_lst: number[], filter?: Filter) => any
+	getPercentile: (term: Term, percentile_lst: number[], termfilter?) => any
 	getterm: (f: any) => Term
 	getTerms: (f: any) => any
 	getTermdbConfig: () => any