@sjcrh/proteinpaint-types 2.138.1 → 2.138.3-2

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Files changed (21) hide show
  1. package/dist/aiProjectAdmin.js +11 -0
  2. package/dist/aiProjectList.js +11 -0
  3. package/dist/chunk-4KJDCFS4.js +123 -0
  4. package/dist/chunk-EAHOJPLM.js +96 -0
  5. package/dist/{chunk-EGEOFGXO.js → chunk-FYRWYZEE.js} +63 -49
  6. package/dist/{chunk-RWMZSRX7.js → chunk-KRYTJ2SL.js} +2 -2
  7. package/dist/{chunk-XH7LJZRQ.js → chunk-LDQNJLYQ.js} +2 -2
  8. package/dist/{chunk-Z2VOERJ2.js → chunk-VHEL5P6L.js} +2 -2
  9. package/dist/{chunk-O7IJ2JNI.js → chunk-XJU4JALX.js} +2 -2
  10. package/dist/gdc.grin2.js +1 -1
  11. package/dist/grin2.js +1 -1
  12. package/dist/healthcheck.js +1 -1
  13. package/dist/index.js +72 -56
  14. package/dist/sampleWsiAiApi.js +1 -1
  15. package/dist/samplewsimages.js +1 -1
  16. package/package.json +1 -1
  17. package/src/dataset.ts +21 -4
  18. package/src/index.ts +2 -0
  19. package/src/routes/aiProjectAdmin.ts +26 -0
  20. package/src/routes/aiProjectList.ts +20 -0
  21. package/src/routes/samplewsimages.ts +22 -4
package/dist/aiProjectAdmin.js ADDED
@@ -0,0 +1,11 @@
1
+ import {
2
+ aiProjectAdminPayload,
3
+ validAIProjectAdminRequest,
4
+ validAIProjectAdminResponse
5
+ } from "./chunk-4KJDCFS4.js";
6
+ import "./chunk-CNSSF43V.js";
7
+ export {
8
+ aiProjectAdminPayload,
9
+ validAIProjectAdminRequest,
10
+ validAIProjectAdminResponse
11
+ };
package/dist/aiProjectList.js ADDED
@@ -0,0 +1,11 @@
1
+ import {
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+ aiProjectListPayload,
3
+ validAIProjectListRequest,
4
+ validAIProjectListResponse
5
+ } from "./chunk-EAHOJPLM.js";
6
+ import "./chunk-CNSSF43V.js";
7
+ export {
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+ aiProjectListPayload,
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+ validAIProjectListRequest,
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+ validAIProjectListResponse
11
+ };
package/dist/chunk-4KJDCFS4.js ADDED
@@ -0,0 +1,123 @@
1
+ import {
2
+ __toESM,
3
+ require_lib
4
+ } from "./chunk-CNSSF43V.js";
5
+
6
+ // dist/aiProjectAdmin.ts
7
+ var import_typia = __toESM(require_lib(), 1);
8
+
9
+ // src/routes/aiProjectAdmin.ts
10
+ var aiProjectAdminPayload = {
11
+ request: {
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+ typeId: "AIProjectAdminRequest"
13
+ },
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+ response: {
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+ typeId: "AIProjectAdminResponse"
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+ }
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+ };
18
+
19
+ // dist/aiProjectAdmin.ts
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+ var validAIProjectAdminRequest = (input) => {
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+ const errors = [];
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+ const __is = (input2) => {
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+ const $io0 = (input3) => "string" === typeof input3.genome && "string" === typeof input3.dslabel && ("object" === typeof input3.project && null !== input3.project && $io1(input3.project));
24
+ const $io1 = (input3) => "string" === typeof input3.name && (void 0 === input3.id || "number" === typeof input3.id) && (void 0 === input3.fitler || "string" === typeof input3.fitler) && (void 0 === input3.classes || Array.isArray(input3.classes));
25
+ return "object" === typeof input2 && null !== input2 && $io0(input2);
26
+ };
27
+ if (false === __is(input)) {
28
+ const $report = import_typia.createValidate.report(errors);
29
+ ((input2, _path, _exceptionable = true) => {
30
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.genome || $report(_exceptionable2, {
31
+ path: _path2 + ".genome",
32
+ expected: "string",
33
+ value: input3.genome
34
+ }), "string" === typeof input3.dslabel || $report(_exceptionable2, {
35
+ path: _path2 + ".dslabel",
36
+ expected: "string",
37
+ value: input3.dslabel
38
+ }), ("object" === typeof input3.project && null !== input3.project || $report(_exceptionable2, {
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+ path: _path2 + ".project",
40
+ expected: "__type",
41
+ value: input3.project
42
+ })) && $vo1(input3.project, _path2 + ".project", _exceptionable2) || $report(_exceptionable2, {
43
+ path: _path2 + ".project",
44
+ expected: "__type",
45
+ value: input3.project
46
+ })].every((flag) => flag);
47
+ const $vo1 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.name || $report(_exceptionable2, {
48
+ path: _path2 + ".name",
49
+ expected: "string",
50
+ value: input3.name
51
+ }), void 0 === input3.id || "number" === typeof input3.id || $report(_exceptionable2, {
52
+ path: _path2 + ".id",
53
+ expected: "(number | undefined)",
54
+ value: input3.id
55
+ }), void 0 === input3.fitler || "string" === typeof input3.fitler || $report(_exceptionable2, {
56
+ path: _path2 + ".fitler",
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+ expected: "(string | undefined)",
58
+ value: input3.fitler
59
+ }), void 0 === input3.classes || Array.isArray(input3.classes) || $report(_exceptionable2, {
60
+ path: _path2 + ".classes",
61
+ expected: "(Array<any> | undefined)",
62
+ value: input3.classes
63
+ })].every((flag) => flag);
64
+ return ("object" === typeof input2 && null !== input2 || $report(true, {
65
+ path: _path + "",
66
+ expected: "AIProjectAdminRequest",
67
+ value: input2
68
+ })) && $vo0(input2, _path + "", true) || $report(true, {
69
+ path: _path + "",
70
+ expected: "AIProjectAdminRequest",
71
+ value: input2
72
+ });
73
+ })(input, "$input", true);
74
+ }
75
+ const success = 0 === errors.length;
76
+ return {
77
+ success,
78
+ errors,
79
+ data: success ? input : void 0
80
+ };
81
+ };
82
+ var validAIProjectAdminResponse = (input) => {
83
+ const errors = [];
84
+ const __is = (input2) => {
85
+ const $io0 = (input3) => ("ok" === input3.status || "error" === input3.status) && (void 0 === input3.error || "string" === typeof input3.error);
86
+ return "object" === typeof input2 && null !== input2 && $io0(input2);
87
+ };
88
+ if (false === __is(input)) {
89
+ const $report = import_typia.createValidate.report(errors);
90
+ ((input2, _path, _exceptionable = true) => {
91
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["ok" === input3.status || "error" === input3.status || $report(_exceptionable2, {
92
+ path: _path2 + ".status",
93
+ expected: '("error" | "ok")',
94
+ value: input3.status
95
+ }), void 0 === input3.error || "string" === typeof input3.error || $report(_exceptionable2, {
96
+ path: _path2 + ".error",
97
+ expected: "(string | undefined)",
98
+ value: input3.error
99
+ })].every((flag) => flag);
100
+ return ("object" === typeof input2 && null !== input2 || $report(true, {
101
+ path: _path + "",
102
+ expected: "AIProjectAdminResponse",
103
+ value: input2
104
+ })) && $vo0(input2, _path + "", true) || $report(true, {
105
+ path: _path + "",
106
+ expected: "AIProjectAdminResponse",
107
+ value: input2
108
+ });
109
+ })(input, "$input", true);
110
+ }
111
+ const success = 0 === errors.length;
112
+ return {
113
+ success,
114
+ errors,
115
+ data: success ? input : void 0
116
+ };
117
+ };
118
+
119
+ export {
120
+ aiProjectAdminPayload,
121
+ validAIProjectAdminRequest,
122
+ validAIProjectAdminResponse
123
+ };
package/dist/chunk-EAHOJPLM.js ADDED
@@ -0,0 +1,96 @@
1
+ import {
2
+ __toESM,
3
+ require_lib
4
+ } from "./chunk-CNSSF43V.js";
5
+
6
+ // dist/aiProjectList.ts
7
+ var import_typia = __toESM(require_lib(), 1);
8
+
9
+ // src/routes/aiProjectList.ts
10
+ var aiProjectListPayload = {
11
+ request: {
12
+ typeId: "AIProjectListRequest"
13
+ },
14
+ response: {
15
+ typeId: "AIProjectListResponse"
16
+ }
17
+ };
18
+
19
+ // dist/aiProjectList.ts
20
+ var validAIProjectListRequest = (input) => {
21
+ const errors = [];
22
+ const __is = (input2) => {
23
+ return "object" === typeof input2 && null !== input2 && ("string" === typeof input2.genome && "string" === typeof input2.dslabel);
24
+ };
25
+ if (false === __is(input)) {
26
+ const $report = import_typia.createValidate.report(errors);
27
+ ((input2, _path, _exceptionable = true) => {
28
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.genome || $report(_exceptionable2, {
29
+ path: _path2 + ".genome",
30
+ expected: "string",
31
+ value: input3.genome
32
+ }), "string" === typeof input3.dslabel || $report(_exceptionable2, {
33
+ path: _path2 + ".dslabel",
34
+ expected: "string",
35
+ value: input3.dslabel
36
+ })].every((flag) => flag);
37
+ return ("object" === typeof input2 && null !== input2 || $report(true, {
38
+ path: _path + "",
39
+ expected: "AIProjectListRequest",
40
+ value: input2
41
+ })) && $vo0(input2, _path + "", true) || $report(true, {
42
+ path: _path + "",
43
+ expected: "AIProjectListRequest",
44
+ value: input2
45
+ });
46
+ })(input, "$input", true);
47
+ }
48
+ const success = 0 === errors.length;
49
+ return {
50
+ success,
51
+ errors,
52
+ data: success ? input : void 0
53
+ };
54
+ };
55
+ var validAIProjectListResponse = (input) => {
56
+ const errors = [];
57
+ const __is = (input2) => {
58
+ const $io0 = (input3) => ("ok" === input3.status || "error" === input3.status) && (void 0 === input3.error || "string" === typeof input3.error);
59
+ return "object" === typeof input2 && null !== input2 && $io0(input2);
60
+ };
61
+ if (false === __is(input)) {
62
+ const $report = import_typia.createValidate.report(errors);
63
+ ((input2, _path, _exceptionable = true) => {
64
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["ok" === input3.status || "error" === input3.status || $report(_exceptionable2, {
65
+ path: _path2 + ".status",
66
+ expected: '("error" | "ok")',
67
+ value: input3.status
68
+ }), void 0 === input3.error || "string" === typeof input3.error || $report(_exceptionable2, {
69
+ path: _path2 + ".error",
70
+ expected: "(string | undefined)",
71
+ value: input3.error
72
+ })].every((flag) => flag);
73
+ return ("object" === typeof input2 && null !== input2 || $report(true, {
74
+ path: _path + "",
75
+ expected: "AIProjectListResponse",
76
+ value: input2
77
+ })) && $vo0(input2, _path + "", true) || $report(true, {
78
+ path: _path + "",
79
+ expected: "AIProjectListResponse",
80
+ value: input2
81
+ });
82
+ })(input, "$input", true);
83
+ }
84
+ const success = 0 === errors.length;
85
+ return {
86
+ success,
87
+ errors,
88
+ data: success ? input : void 0
89
+ };
90
+ };
91
+
92
+ export {
93
+ aiProjectListPayload,
94
+ validAIProjectListRequest,
95
+ validAIProjectListResponse
96
+ };
package/dist/{chunk-EGEOFGXO.js → chunk-FYRWYZEE.js} RENAMED
@@ -21,7 +21,7 @@ var sampleWSImagesPayload = {
21
21
  var validSampleWSImagesRequest = (input) => {
22
22
  const errors = [];
23
23
  const __is = (input2) => {
24
- return "object" === typeof input2 && null !== input2 && ("string" === typeof input2.genome && "string" === typeof input2.dslabel && "string" === typeof input2.sample_id && "string" === typeof input2.wsimage && "number" === typeof input2.index);
24
+ return "object" === typeof input2 && null !== input2 && ("string" === typeof input2.genome && "string" === typeof input2.dslabel && "string" === typeof input2.sample_id && "string" === typeof input2.wsimage);
25
25
  };
26
26
  if (false === __is(input)) {
27
27
  const $report = import_typia.createValidate.report(errors);
@@ -42,10 +42,6 @@ var validSampleWSImagesRequest = (input) => {
42
42
  path: _path2 + ".wsimage",
43
43
  expected: "string",
44
44
  value: input3.wsimage
45
- }), "number" === typeof input3.index || $report(_exceptionable2, {
46
- path: _path2 + ".index",
47
- expected: "number",
48
- value: input3.index
49
45
  })].every((flag) => flag);
50
46
  return ("object" === typeof input2 && null !== input2 || $report(true, {
51
47
  path: _path + "",
@@ -69,9 +65,10 @@ var validSampleWSImagesResponse = (input) => {
69
65
  const errors = [];
70
66
  const __is = (input2) => {
71
67
  const $io0 = (input3) => Array.isArray(input3.sampleWSImages) && input3.sampleWSImages.every((elem) => "object" === typeof elem && null !== elem && $io1(elem));
72
- const $io1 = (input3) => "string" === typeof input3.filename && (void 0 === input3.overlays || Array.isArray(input3.overlays) && input3.overlays.every((elem) => "string" === typeof elem)) && (void 0 === input3.predictionLayers || Array.isArray(input3.predictionLayers) && input3.predictionLayers.every((elem) => "string" === typeof elem)) && (void 0 === input3.zoomInPoints || Array.isArray(input3.zoomInPoints) && input3.zoomInPoints.every((elem) => Array.isArray(elem) && (elem.length === 2 && "number" === typeof elem[0] && "number" === typeof elem[1]))) && "string" === typeof input3.metadata && (void 0 === input3.annotationsData || Array.isArray(input3.annotationsData) && input3.annotationsData.every((elem) => "object" === typeof elem && null !== elem && $io2(elem))) && (void 0 === input3.classes || Array.isArray(input3.classes) && input3.classes.every((elem) => "object" === typeof elem && null !== elem && $io3(elem))) && true && (void 0 === input3.activePatchColor || "string" === typeof input3.activePatchColor);
73
- const $io2 = (input3) => Array.isArray(input3.zoomCoordinates) && (input3.zoomCoordinates.length === 2 && "number" === typeof input3.zoomCoordinates[0] && "number" === typeof input3.zoomCoordinates[1]) && "string" === typeof input3.type && "string" === typeof input3["class"] && "number" === typeof input3.uncertainty;
74
- const $io3 = (input3) => "number" === typeof input3.id && "string" === typeof input3.shortcut && "string" === typeof input3.label && "string" === typeof input3.color;
68
+ const $io1 = (input3) => "string" === typeof input3.filename && (void 0 === input3.overlays || Array.isArray(input3.overlays) && input3.overlays.every((elem) => "string" === typeof elem)) && (void 0 === input3.predictionLayers || Array.isArray(input3.predictionLayers) && input3.predictionLayers.every((elem) => "string" === typeof elem)) && "string" === typeof input3.metadata && (void 0 === input3.annotationsData || Array.isArray(input3.annotationsData) && input3.annotationsData.every((elem) => "object" === typeof elem && null !== elem && $io2(elem))) && (void 0 === input3.predictions || Array.isArray(input3.predictions) && input3.predictions.every((elem) => "object" === typeof elem && null !== elem && $io3(elem))) && (void 0 === input3.classes || Array.isArray(input3.classes) && input3.classes.every((elem) => "object" === typeof elem && null !== elem && $io4(elem))) && true && (void 0 === input3.activePatchColor || "string" === typeof input3.activePatchColor) && (void 0 === input3.tileSize || "number" === typeof input3.tileSize);
69
+ const $io2 = (input3) => Array.isArray(input3.zoomCoordinates) && (input3.zoomCoordinates.length === 2 && "number" === typeof input3.zoomCoordinates[0] && "number" === typeof input3.zoomCoordinates[1]) && "string" === typeof input3["class"];
70
+ const $io3 = (input3) => Array.isArray(input3.zoomCoordinates) && (input3.zoomCoordinates.length === 2 && "number" === typeof input3.zoomCoordinates[0] && "number" === typeof input3.zoomCoordinates[1]) && "string" === typeof input3.type && "string" === typeof input3["class"] && "number" === typeof input3.uncertainty;
71
+ const $io4 = (input3) => "number" === typeof input3.id && "string" === typeof input3.shortcut && "string" === typeof input3.label && "string" === typeof input3.color;
75
72
  return "object" === typeof input2 && null !== input2 && $io0(input2);
76
73
  };
77
74
  if (false === __is(input)) {
@@ -122,57 +119,42 @@ var validSampleWSImagesResponse = (input) => {
122
119
  path: _path2 + ".predictionLayers",
123
120
  expected: "(Array<string> | undefined)",
124
121
  value: input3.predictionLayers
125
- }), void 0 === input3.zoomInPoints || (Array.isArray(input3.zoomInPoints) || $report(_exceptionable2, {
126
- path: _path2 + ".zoomInPoints",
127
- expected: "(Array<[number, number]> | undefined)",
128
- value: input3.zoomInPoints
129
- })) && input3.zoomInPoints.map((elem, _index4) => (Array.isArray(elem) || $report(_exceptionable2, {
130
- path: _path2 + ".zoomInPoints[" + _index4 + "]",
131
- expected: "[number, number]",
132
- value: elem
133
- })) && ((elem.length === 2 || $report(_exceptionable2, {
134
- path: _path2 + ".zoomInPoints[" + _index4 + "]",
135
- expected: "[number, number]",
136
- value: elem
137
- })) && [
138
- "number" === typeof elem[0] || $report(_exceptionable2, {
139
- path: _path2 + ".zoomInPoints[" + _index4 + "][0]",
140
- expected: "number",
141
- value: elem[0]
142
- }),
143
- "number" === typeof elem[1] || $report(_exceptionable2, {
144
- path: _path2 + ".zoomInPoints[" + _index4 + "][1]",
145
- expected: "number",
146
- value: elem[1]
147
- })
148
- ].every((flag) => flag)) || $report(_exceptionable2, {
149
- path: _path2 + ".zoomInPoints[" + _index4 + "]",
150
- expected: "[number, number]",
151
- value: elem
152
- })).every((flag) => flag) || $report(_exceptionable2, {
153
- path: _path2 + ".zoomInPoints",
154
- expected: "(Array<[number, number]> | undefined)",
155
- value: input3.zoomInPoints
156
122
  }), "string" === typeof input3.metadata || $report(_exceptionable2, {
157
123
  path: _path2 + ".metadata",
158
124
  expected: "string",
159
125
  value: input3.metadata
160
126
  }), void 0 === input3.annotationsData || (Array.isArray(input3.annotationsData) || $report(_exceptionable2, {
161
127
  path: _path2 + ".annotationsData",
162
- expected: "(Array<__type> | undefined)",
128
+ expected: "(Array<Annotation> | undefined)",
163
129
  value: input3.annotationsData
164
- })) && input3.annotationsData.map((elem, _index5) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
165
- path: _path2 + ".annotationsData[" + _index5 + "]",
166
- expected: "__type",
130
+ })) && input3.annotationsData.map((elem, _index4) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
131
+ path: _path2 + ".annotationsData[" + _index4 + "]",
132
+ expected: "Annotation",
167
133
  value: elem
168
- })) && $vo2(elem, _path2 + ".annotationsData[" + _index5 + "]", _exceptionable2) || $report(_exceptionable2, {
169
- path: _path2 + ".annotationsData[" + _index5 + "]",
170
- expected: "__type",
134
+ })) && $vo2(elem, _path2 + ".annotationsData[" + _index4 + "]", _exceptionable2) || $report(_exceptionable2, {
135
+ path: _path2 + ".annotationsData[" + _index4 + "]",
136
+ expected: "Annotation",
171
137
  value: elem
172
138
  })).every((flag) => flag) || $report(_exceptionable2, {
173
139
  path: _path2 + ".annotationsData",
174
- expected: "(Array<__type> | undefined)",
140
+ expected: "(Array<Annotation> | undefined)",
175
141
  value: input3.annotationsData
142
+ }), void 0 === input3.predictions || (Array.isArray(input3.predictions) || $report(_exceptionable2, {
143
+ path: _path2 + ".predictions",
144
+ expected: "(Array<Prediction> | undefined)",
145
+ value: input3.predictions
146
+ })) && input3.predictions.map((elem, _index5) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
147
+ path: _path2 + ".predictions[" + _index5 + "]",
148
+ expected: "Prediction",
149
+ value: elem
150
+ })) && $vo3(elem, _path2 + ".predictions[" + _index5 + "]", _exceptionable2) || $report(_exceptionable2, {
151
+ path: _path2 + ".predictions[" + _index5 + "]",
152
+ expected: "Prediction",
153
+ value: elem
154
+ })).every((flag) => flag) || $report(_exceptionable2, {
155
+ path: _path2 + ".predictions",
156
+ expected: "(Array<Prediction> | undefined)",
157
+ value: input3.predictions
176
158
  }), void 0 === input3.classes || (Array.isArray(input3.classes) || $report(_exceptionable2, {
177
159
  path: _path2 + ".classes",
178
160
  expected: "(Array<WSIClass> | undefined)",
@@ -181,7 +163,7 @@ var validSampleWSImagesResponse = (input) => {
181
163
  path: _path2 + ".classes[" + _index6 + "]",
182
164
  expected: "WSIClass",
183
165
  value: elem
184
- })) && $vo3(elem, _path2 + ".classes[" + _index6 + "]", _exceptionable2) || $report(_exceptionable2, {
166
+ })) && $vo4(elem, _path2 + ".classes[" + _index6 + "]", _exceptionable2) || $report(_exceptionable2, {
185
167
  path: _path2 + ".classes[" + _index6 + "]",
186
168
  expected: "WSIClass",
187
169
  value: elem
@@ -193,6 +175,10 @@ var validSampleWSImagesResponse = (input) => {
193
175
  path: _path2 + ".activePatchColor",
194
176
  expected: "(string | undefined)",
195
177
  value: input3.activePatchColor
178
+ }), void 0 === input3.tileSize || "number" === typeof input3.tileSize || $report(_exceptionable2, {
179
+ path: _path2 + ".tileSize",
180
+ expected: "(number | undefined)",
181
+ value: input3.tileSize
196
182
  })].every((flag) => flag);
197
183
  const $vo2 = (input3, _path2, _exceptionable2 = true) => [(Array.isArray(input3.zoomCoordinates) || $report(_exceptionable2, {
198
184
  path: _path2 + ".zoomCoordinates",
@@ -217,6 +203,34 @@ var validSampleWSImagesResponse = (input) => {
217
203
  path: _path2 + ".zoomCoordinates",
218
204
  expected: "[number, number]",
219
205
  value: input3.zoomCoordinates
206
+ }), "string" === typeof input3["class"] || $report(_exceptionable2, {
207
+ path: _path2 + '["class"]',
208
+ expected: "string",
209
+ value: input3["class"]
210
+ })].every((flag) => flag);
211
+ const $vo3 = (input3, _path2, _exceptionable2 = true) => [(Array.isArray(input3.zoomCoordinates) || $report(_exceptionable2, {
212
+ path: _path2 + ".zoomCoordinates",
213
+ expected: "[number, number]",
214
+ value: input3.zoomCoordinates
215
+ })) && ((input3.zoomCoordinates.length === 2 || $report(_exceptionable2, {
216
+ path: _path2 + ".zoomCoordinates",
217
+ expected: "[number, number]",
218
+ value: input3.zoomCoordinates
219
+ })) && [
220
+ "number" === typeof input3.zoomCoordinates[0] || $report(_exceptionable2, {
221
+ path: _path2 + ".zoomCoordinates[0]",
222
+ expected: "number",
223
+ value: input3.zoomCoordinates[0]
224
+ }),
225
+ "number" === typeof input3.zoomCoordinates[1] || $report(_exceptionable2, {
226
+ path: _path2 + ".zoomCoordinates[1]",
227
+ expected: "number",
228
+ value: input3.zoomCoordinates[1]
229
+ })
230
+ ].every((flag) => flag)) || $report(_exceptionable2, {
231
+ path: _path2 + ".zoomCoordinates",
232
+ expected: "[number, number]",
233
+ value: input3.zoomCoordinates
220
234
  }), "string" === typeof input3.type || $report(_exceptionable2, {
221
235
  path: _path2 + ".type",
222
236
  expected: "string",
@@ -230,7 +244,7 @@ var validSampleWSImagesResponse = (input) => {
230
244
  expected: "number",
231
245
  value: input3.uncertainty
232
246
  })].every((flag) => flag);
233
- const $vo3 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.id || $report(_exceptionable2, {
247
+ const $vo4 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.id || $report(_exceptionable2, {
234
248
  path: _path2 + ".id",
235
249
  expected: "number",
236
250
  value: input3.id
package/dist/{chunk-RWMZSRX7.js → chunk-KRYTJ2SL.js} RENAMED
@@ -65,7 +65,7 @@ var validHealthCheckResponse = (input) => {
65
65
  const errors = [];
66
66
  const __is = (input2) => {
67
67
  const $join = import_typia.createValidate.join;
68
- const $io0 = (input3) => ("error" === input3.status || "ok" === input3.status) && ("object" === typeof input3.genomes && null !== input3.genomes && false === Array.isArray(input3.genomes) && $io1(input3.genomes)) && ("object" === typeof input3.versionInfo && null !== input3.versionInfo && $io6(input3.versionInfo)) && (void 0 === input3.byDataset || "object" === typeof input3.byDataset && null !== input3.byDataset && false === Array.isArray(input3.byDataset) && $io9(input3.byDataset)) && (void 0 === input3.auth || "object" === typeof input3.auth && null !== input3.auth && false === Array.isArray(input3.auth) && $io10(input3.auth)) && (void 0 === input3.w || Array.isArray(input3.w) && input3.w.every((elem) => "number" === typeof elem)) && (void 0 === input3.rs || "number" === typeof input3.rs);
68
+ const $io0 = (input3) => ("ok" === input3.status || "error" === input3.status) && ("object" === typeof input3.genomes && null !== input3.genomes && false === Array.isArray(input3.genomes) && $io1(input3.genomes)) && ("object" === typeof input3.versionInfo && null !== input3.versionInfo && $io6(input3.versionInfo)) && (void 0 === input3.byDataset || "object" === typeof input3.byDataset && null !== input3.byDataset && false === Array.isArray(input3.byDataset) && $io9(input3.byDataset)) && (void 0 === input3.auth || "object" === typeof input3.auth && null !== input3.auth && false === Array.isArray(input3.auth) && $io10(input3.auth)) && (void 0 === input3.w || Array.isArray(input3.w) && input3.w.every((elem) => "number" === typeof elem)) && (void 0 === input3.rs || "number" === typeof input3.rs);
69
69
  const $io1 = (input3) => Object.keys(input3).every((key) => {
70
70
  const value = input3[key];
71
71
  if (void 0 === value)
@@ -117,7 +117,7 @@ var validHealthCheckResponse = (input) => {
117
117
  const $report = import_typia.createValidate.report(errors);
118
118
  ((input2, _path, _exceptionable = true) => {
119
119
  const $join = import_typia.createValidate.join;
120
- const $vo0 = (input3, _path2, _exceptionable2 = true) => ["error" === input3.status || "ok" === input3.status || $report(_exceptionable2, {
120
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["ok" === input3.status || "error" === input3.status || $report(_exceptionable2, {
121
121
  path: _path2 + ".status",
122
122
  expected: '("error" | "ok")',
123
123
  value: input3.status
package/dist/{chunk-XH7LJZRQ.js → chunk-LDQNJLYQ.js} RENAMED
@@ -457,7 +457,7 @@ var validRunGRIN2Response = (input) => {
457
457
  const errors = [];
458
458
  const __is = (input2) => {
459
459
  const $join = import_typia.createValidate.join;
460
- const $io0 = (input3) => ("success" === input3.status || "error" === input3.status) && (void 0 === input3.error || "string" === typeof input3.error) && (void 0 === input3.pngImg || "string" === typeof input3.pngImg) && true && true && (void 0 === input3.rustResult || "object" === typeof input3.rustResult && null !== input3.rustResult && $io1(input3.rustResult)) && (void 0 === input3.timing || "object" === typeof input3.timing && null !== input3.timing && $io11(input3.timing));
460
+ const $io0 = (input3) => ("error" === input3.status || "success" === input3.status) && (void 0 === input3.error || "string" === typeof input3.error) && (void 0 === input3.pngImg || "string" === typeof input3.pngImg) && true && true && (void 0 === input3.rustResult || "object" === typeof input3.rustResult && null !== input3.rustResult && $io1(input3.rustResult)) && (void 0 === input3.timing || "object" === typeof input3.timing && null !== input3.timing && $io11(input3.timing));
461
461
  const $io1 = (input3) => "string" === typeof input3.successful_data && (Array.isArray(input3.failed_files) && input3.failed_files.every((elem) => "object" === typeof elem && null !== elem && $io2(elem))) && ("object" === typeof input3.summary && null !== input3.summary && $io3(input3.summary));
462
462
  const $io2 = (input3) => "string" === typeof input3.case_id && "string" === typeof input3.data_type && "string" === typeof input3.error_type && "string" === typeof input3.error_details && "number" === typeof input3.attempts_made;
463
463
  const $io3 = (input3) => "summary" === input3.type && "number" === typeof input3.total_files && "number" === typeof input3.successful_files && "number" === typeof input3.failed_files && (Array.isArray(input3.errors) && input3.errors.every((elem) => "object" === typeof elem && null !== elem && $io2(elem))) && "number" === typeof input3.filtered_records && "number" === typeof input3.filtered_maf_records && "number" === typeof input3.filtered_cnv_records && "number" === typeof input3.included_maf_records && "number" === typeof input3.included_cnv_records && ("object" === typeof input3.filtered_records_by_case && null !== input3.filtered_records_by_case && false === Array.isArray(input3.filtered_records_by_case) && $io4(input3.filtered_records_by_case)) && ("object" === typeof input3.hyper_mutator_records && null !== input3.hyper_mutator_records && false === Array.isArray(input3.hyper_mutator_records) && $io10(input3.hyper_mutator_records)) && ("object" === typeof input3.excluded_by_max_record && null !== input3.excluded_by_max_record && false === Array.isArray(input3.excluded_by_max_record) && $io10(input3.excluded_by_max_record));
@@ -503,7 +503,7 @@ var validRunGRIN2Response = (input) => {
503
503
  const $report = import_typia.createValidate.report(errors);
504
504
  ((input2, _path, _exceptionable = true) => {
505
505
  const $join = import_typia.createValidate.join;
506
- const $vo0 = (input3, _path2, _exceptionable2 = true) => ["success" === input3.status || "error" === input3.status || $report(_exceptionable2, {
506
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["error" === input3.status || "success" === input3.status || $report(_exceptionable2, {
507
507
  path: _path2 + ".status",
508
508
  expected: '("error" | "success")',
509
509
  value: input3.status
package/dist/{chunk-Z2VOERJ2.js → chunk-VHEL5P6L.js} RENAMED
@@ -146,7 +146,7 @@ var validGRIN2Request = (input) => {
146
146
  var validGRIN2Response = (input) => {
147
147
  const errors = [];
148
148
  const __is = (input2) => {
149
- const $io0 = (input3) => ("success" === input3.status || "error" === input3.status) && (void 0 === input3.error || "string" === typeof input3.error) && (void 0 === input3.pngImg || "string" === typeof input3.pngImg) && true && (void 0 === input3.topGeneTable || "object" === typeof input3.topGeneTable && null !== input3.topGeneTable && $io1(input3.topGeneTable)) && (void 0 === input3.totalGenes || "number" === typeof input3.totalGenes) && (void 0 === input3.showingTop || "number" === typeof input3.showingTop) && (void 0 === input3.timing || "object" === typeof input3.timing && null !== input3.timing && $io4(input3.timing)) && (void 0 === input3.processingSummary || "object" === typeof input3.processingSummary && null !== input3.processingSummary && $io5(input3.processingSummary));
149
+ const $io0 = (input3) => ("error" === input3.status || "success" === input3.status) && (void 0 === input3.error || "string" === typeof input3.error) && (void 0 === input3.pngImg || "string" === typeof input3.pngImg) && true && (void 0 === input3.topGeneTable || "object" === typeof input3.topGeneTable && null !== input3.topGeneTable && $io1(input3.topGeneTable)) && (void 0 === input3.totalGenes || "number" === typeof input3.totalGenes) && (void 0 === input3.showingTop || "number" === typeof input3.showingTop) && (void 0 === input3.timing || "object" === typeof input3.timing && null !== input3.timing && $io4(input3.timing)) && (void 0 === input3.processingSummary || "object" === typeof input3.processingSummary && null !== input3.processingSummary && $io5(input3.processingSummary));
150
150
  const $io1 = (input3) => Array.isArray(input3.columns) && input3.columns.every((elem) => "object" === typeof elem && null !== elem && $io2(elem)) && (Array.isArray(input3.rows) && input3.rows.every((elem) => Array.isArray(elem) && elem.every((elem2) => "object" === typeof elem2 && null !== elem2 && $io3(elem2))));
151
151
  const $io2 = (input3) => "string" === typeof input3.label && "boolean" === typeof input3.sortable;
152
152
  const $io3 = (input3) => "string" === typeof input3.value || "number" === typeof input3.value;
@@ -158,7 +158,7 @@ var validGRIN2Response = (input) => {
158
158
  if (false === __is(input)) {
159
159
  const $report = import_typia.createValidate.report(errors);
160
160
  ((input2, _path, _exceptionable = true) => {
161
- const $vo0 = (input3, _path2, _exceptionable2 = true) => ["success" === input3.status || "error" === input3.status || $report(_exceptionable2, {
161
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["error" === input3.status || "success" === input3.status || $report(_exceptionable2, {
162
162
  path: _path2 + ".status",
163
163
  expected: '("error" | "success")',
164
164
  value: input3.status
package/dist/{chunk-O7IJ2JNI.js → chunk-XJU4JALX.js} RENAMED
@@ -60,13 +60,13 @@ var validSampleWSIAiApiRequest = (input) => {
60
60
  var validSampleWSIAiApiResponse = (input) => {
61
61
  const errors = [];
62
62
  const __is = (input2) => {
63
- const $io0 = (input3) => ("error" === input3.status || "ok" === input3.status) && (void 0 === input3.error || "string" === typeof input3.error);
63
+ const $io0 = (input3) => ("ok" === input3.status || "error" === input3.status) && (void 0 === input3.error || "string" === typeof input3.error);
64
64
  return "object" === typeof input2 && null !== input2 && $io0(input2);
65
65
  };
66
66
  if (false === __is(input)) {
67
67
  const $report = import_typia.createValidate.report(errors);
68
68
  ((input2, _path, _exceptionable = true) => {
69
- const $vo0 = (input3, _path2, _exceptionable2 = true) => ["error" === input3.status || "ok" === input3.status || $report(_exceptionable2, {
69
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["ok" === input3.status || "error" === input3.status || $report(_exceptionable2, {
70
70
  path: _path2 + ".status",
71
71
  expected: '("error" | "ok")',
72
72
  value: input3.status
package/dist/gdc.grin2.js CHANGED
@@ -5,7 +5,7 @@ import {
5
5
  validGdcGRIN2listResponse,
6
6
  validRunGRIN2Request,
7
7
  validRunGRIN2Response
8
- } from "./chunk-XH7LJZRQ.js";
8
+ } from "./chunk-LDQNJLYQ.js";
9
9
  import "./chunk-CNSSF43V.js";
10
10
  export {
11
11
  gdcGRIN2listPayload,
package/dist/grin2.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  GRIN2Payload,
3
3
  validGRIN2Request,
4
4
  validGRIN2Response
5
- } from "./chunk-Z2VOERJ2.js";
5
+ } from "./chunk-VHEL5P6L.js";
6
6
  import "./chunk-CNSSF43V.js";
7
7
  export {
8
8
  GRIN2Payload,
package/dist/healthcheck.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  healthcheckPayload,
3
3
  validHealthCheckRequest,
4
4
  validHealthCheckResponse
5
- } from "./chunk-RWMZSRX7.js";
5
+ } from "./chunk-KRYTJ2SL.js";
6
6
  import "./chunk-CNSSF43V.js";
7
7
  export {
8
8
  healthcheckPayload,
package/dist/index.js CHANGED
@@ -1,3 +1,18 @@
1
+ import {
2
+ validWSISamplesRequest,
3
+ validWSISamplesResponse,
4
+ wsiSamplesPayload
5
+ } from "./chunk-W6NLM363.js";
6
+ import {
7
+ termChildrenPayload,
8
+ validTermChildrenRequest,
9
+ validTermChildrenResponse
10
+ } from "./chunk-HKGWC7OO.js";
11
+ import {
12
+ termsByIdsPayload,
13
+ validTermsByIdsRequest,
14
+ validTermsByIdsResponse
15
+ } from "./chunk-CC3OBRKE.js";
1
16
  import {
2
17
  topMutatedGenePayload,
3
18
  validtopMutatedGeneRequest,
@@ -29,10 +44,15 @@ import {
29
44
  wsImagesPayload
30
45
  } from "./chunk-CQDDRHRY.js";
31
46
  import {
32
- validWSISamplesRequest,
33
- validWSISamplesResponse,
34
- wsiSamplesPayload
35
- } from "./chunk-W6NLM363.js";
47
+ numericCategoriesPayload,
48
+ validNumericCategoriesRequest,
49
+ validNumericCategoriesResponse
50
+ } from "./chunk-DD2RLZHC.js";
51
+ import {
52
+ percentilePayload,
53
+ validPercentileRequest,
54
+ validPercentileResponse
55
+ } from "./chunk-6HAS5WRS.js";
36
56
  import {
37
57
  rootTermPayload,
38
58
  validRootTermRequest,
@@ -64,15 +84,15 @@ import {
64
84
  validTermdbSingleCellSamplesResponse
65
85
  } from "./chunk-LPBYQJG4.js";
66
86
  import {
67
- termChildrenPayload,
68
- validTermChildrenRequest,
69
- validTermChildrenResponse
70
- } from "./chunk-HKGWC7OO.js";
87
+ snpPayload,
88
+ validSnpRequest,
89
+ validSnpResponse
90
+ } from "./chunk-J4QAF4EU.js";
71
91
  import {
72
- termsByIdsPayload,
73
- validTermsByIdsRequest,
74
- validTermsByIdsResponse
75
- } from "./chunk-CC3OBRKE.js";
92
+ diffExpPayload,
93
+ validDERequest,
94
+ validDEResponse
95
+ } from "./chunk-3C26VWPU.js";
76
96
  import {
77
97
  boxplotPayload,
78
98
  validBoxPlotRequest,
@@ -104,15 +124,10 @@ import {
104
124
  validDescrStatsResponse
105
125
  } from "./chunk-I2BMMKPN.js";
106
126
  import {
107
- numericCategoriesPayload,
108
- validNumericCategoriesRequest,
109
- validNumericCategoriesResponse
110
- } from "./chunk-DD2RLZHC.js";
111
- import {
112
- percentilePayload,
113
- validPercentileRequest,
114
- validPercentileResponse
115
- } from "./chunk-6HAS5WRS.js";
127
+ isoformlstPayload,
128
+ validIsoformLstRequest,
129
+ validIsoformLstResponse
130
+ } from "./chunk-B43GFRT4.js";
116
131
  import {
117
132
  ntseqPayload,
118
133
  validNtseqRequest,
@@ -137,32 +152,32 @@ import {
137
152
  sampleWsiAiApiPayload,
138
153
  validSampleWSIAiApiRequest,
139
154
  validSampleWSIAiApiResponse
140
- } from "./chunk-O7IJ2JNI.js";
155
+ } from "./chunk-XJU4JALX.js";
141
156
  import {
142
157
  sampleWSImagesPayload,
143
158
  validSampleWSImagesRequest,
144
159
  validSampleWSImagesResponse
145
- } from "./chunk-EGEOFGXO.js";
160
+ } from "./chunk-FYRWYZEE.js";
146
161
  import {
147
- snpPayload,
148
- validSnpRequest,
149
- validSnpResponse
150
- } from "./chunk-J4QAF4EU.js";
162
+ genesetEnrichmentPayload,
163
+ validGenesetEnrichmentRequest,
164
+ validGenesetEnrichmentResponse
165
+ } from "./chunk-HUMZDPUU.js";
151
166
  import {
152
- diffExpPayload,
153
- validDERequest,
154
- validDEResponse
155
- } from "./chunk-3C26VWPU.js";
167
+ genesetOverrepresentationPayload,
168
+ validGenesetOverrepresentationRequest,
169
+ validGenesetOverrepresentationResponse
170
+ } from "./chunk-VMSVBNM6.js";
156
171
  import {
157
172
  GRIN2Payload,
158
173
  validGRIN2Request,
159
174
  validGRIN2Response
160
- } from "./chunk-Z2VOERJ2.js";
175
+ } from "./chunk-VHEL5P6L.js";
161
176
  import {
162
177
  healthcheckPayload,
163
178
  validHealthCheckRequest,
164
179
  validHealthCheckResponse
165
- } from "./chunk-RWMZSRX7.js";
180
+ } from "./chunk-KRYTJ2SL.js";
166
181
  import {
167
182
  hicdataPayload,
168
183
  validHicdataRequest,
@@ -184,10 +199,15 @@ import {
184
199
  validimgResponse
185
200
  } from "./chunk-KVUJPR42.js";
186
201
  import {
187
- isoformlstPayload,
188
- validIsoformLstRequest,
189
- validIsoformLstResponse
190
- } from "./chunk-B43GFRT4.js";
202
+ datasetPayload,
203
+ validDatasetRequest,
204
+ validDatasetResponse
205
+ } from "./chunk-5S3UWYSK.js";
206
+ import {
207
+ dsDataPayload,
208
+ validDsDataRequest,
209
+ validDsDataResponse
210
+ } from "./chunk-4GCROGGK.js";
191
211
  import {
192
212
  dzImagesPayload,
193
213
  validDZImagesRequest,
@@ -205,7 +225,7 @@ import {
205
225
  validGdcGRIN2listResponse,
206
226
  validRunGRIN2Request,
207
227
  validRunGRIN2Response
208
- } from "./chunk-XH7LJZRQ.js";
228
+ } from "./chunk-LDQNJLYQ.js";
209
229
  import {
210
230
  gdcMafPayload,
211
231
  validGdcMafRequest,
@@ -222,15 +242,15 @@ import {
222
242
  validGeneLookupResponse
223
243
  } from "./chunk-HNETXFC7.js";
224
244
  import {
225
- genesetEnrichmentPayload,
226
- validGenesetEnrichmentRequest,
227
- validGenesetEnrichmentResponse
228
- } from "./chunk-HUMZDPUU.js";
245
+ aiProjectAdminPayload,
246
+ validAIProjectAdminRequest,
247
+ validAIProjectAdminResponse
248
+ } from "./chunk-4KJDCFS4.js";
229
249
  import {
230
- genesetOverrepresentationPayload,
231
- validGenesetOverrepresentationRequest,
232
- validGenesetOverrepresentationResponse
233
- } from "./chunk-VMSVBNM6.js";
250
+ aiProjectListPayload,
251
+ validAIProjectListRequest,
252
+ validAIProjectListResponse
253
+ } from "./chunk-EAHOJPLM.js";
234
254
  import {
235
255
  brainImagingPayload,
236
256
  validBrainImagingRequest,
@@ -258,16 +278,6 @@ import {
258
278
  validCorrelationVolcanoRequest,
259
279
  validCorrelationVolcanoResponse
260
280
  } from "./chunk-QG776KAI.js";
261
- import {
262
- datasetPayload,
263
- validDatasetRequest,
264
- validDatasetResponse
265
- } from "./chunk-5S3UWYSK.js";
266
- import {
267
- dsDataPayload,
268
- validDsDataRequest,
269
- validDsDataResponse
270
- } from "./chunk-4GCROGGK.js";
271
281
  import "./chunk-CNSSF43V.js";
272
282
  export {
273
283
  CorrelationVolcanoPayload,
@@ -276,6 +286,8 @@ export {
276
286
  GdcMafPayload,
277
287
  ProfileFormScoresPayload,
278
288
  ProfileScoresPayload,
289
+ aiProjectAdminPayload,
290
+ aiProjectListPayload,
279
291
  boxplotPayload,
280
292
  brainImagingPayload,
281
293
  brainImagingSamplesPayload,
@@ -321,6 +333,10 @@ export {
321
333
  termsByIdsPayload,
322
334
  tilePayload,
323
335
  topMutatedGenePayload,
336
+ validAIProjectAdminRequest,
337
+ validAIProjectAdminResponse,
338
+ validAIProjectListRequest,
339
+ validAIProjectListResponse,
324
340
  validBoxPlotRequest,
325
341
  validBoxPlotResponse,
326
342
  validBrainImagingRequest,
package/dist/sampleWsiAiApi.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  sampleWsiAiApiPayload,
3
3
  validSampleWSIAiApiRequest,
4
4
  validSampleWSIAiApiResponse
5
- } from "./chunk-O7IJ2JNI.js";
5
+ } from "./chunk-XJU4JALX.js";
6
6
  import "./chunk-CNSSF43V.js";
7
7
  export {
8
8
  sampleWsiAiApiPayload,
package/dist/samplewsimages.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  sampleWSImagesPayload,
3
3
  validSampleWSImagesRequest,
4
4
  validSampleWSImagesResponse
5
- } from "./chunk-EGEOFGXO.js";
5
+ } from "./chunk-FYRWYZEE.js";
6
6
  import "./chunk-CNSSF43V.js";
7
7
  export {
8
8
  sampleWSImagesPayload,
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@sjcrh/proteinpaint-types",
3
- "version": "2.138.1",
3
+ "version": "2.138.3-2",
4
4
  "type": "module",
5
5
  "description": "Shared type definitions between ProteinPaint server and client code",
6
6
  "main": "src/index.ts",
package/src/dataset.ts CHANGED
@@ -148,6 +148,19 @@ type GdcApi = {
148
148
  gdcapi?: boolean
149
149
  }
150
150
 
151
+ type AiApi = {
152
+ /** Represents the configuration for accessing the AI API.
153
+ * For now only AI Histo is supported.
154
+ */
155
+ aiApi?: boolean
156
+ source?: {
157
+ /** Data source for building the termdb on the fly */
158
+ file: string
159
+ /** Column header for sample ids or names */
160
+ sampleKey: string
161
+ }
162
+ }
163
+
151
164
  type SnvIndelFormat = {
152
165
  [index: string]: {
153
166
  /* has value for a non-GT field indicating the variant
@@ -1001,6 +1014,7 @@ export type DZImages = {
1001
1014
  image file to sample mapping is stored in wsimages table
1002
1015
  */
1003
1016
  export type WSImages = {
1017
+ db?: { file: string }
1004
1018
  // type of the image, e.g. H&E
1005
1019
  type: string
1006
1020
 
@@ -1011,6 +1025,7 @@ export type WSImages = {
1011
1025
  activePatchColor?: string
1012
1026
  predictionColor?: Array<number>
1013
1027
  annotationsColor?: Array<number>
1028
+ tileSize?: number
1014
1029
  classes?: WSIClass[]
1015
1030
  uncertainty?: { color: string; label: string }[]
1016
1031
 
@@ -1023,8 +1038,6 @@ export type WSImages = {
1023
1038
  /** ds supplied */
1024
1039
  getWSIAnnotations?: (sampleName: string, wsiImage: string) => Promise<string[]>
1025
1040
  /** ds supplied */
1026
- getZoomInPoints?: (sampleName: string, wsiImage: string, index: number) => Promise<Array<[number, number]>>
1027
- /** ds supplied */
1028
1041
  makeGeoJson?: (sampleId: string, wsiImage: string) => void
1029
1042
  /** ds supplied */
1030
1043
  getWSIPredictionOverlay?: (sampleName: string, wsiImage: string) => Promise<string | undefined>
@@ -1370,8 +1383,11 @@ export type Termdb = {
1370
1383
  * The required minimum number of samples with data as queried with getData() or other code,
1371
1384
  * in order to minimize the ease of extracting identifiable information from aggregate data
1372
1385
  * in server response
1386
+ *
1387
+ * sampleCount: the number of samples with matching data from one or more queried terms
1388
+ * q : req.query as processed through app middleware (pre-parsed, may have req.body props, __protectec__, etc)
1373
1389
  */
1374
- minSampleSizeForFilterCharts?: number
1390
+ hasMinSampleSize?: (sampleCount: number, q: any) => boolean
1375
1391
  /** if true, backend is allowed to send sample names to client in charts */
1376
1392
  displaySampleIds?: (clientAuthResult: any) => boolean
1377
1393
  converSampleIds?: boolean
@@ -1466,7 +1482,8 @@ keep this setting here for reason of:
1466
1482
 
1467
1483
  //GDC
1468
1484
  termid2totalsize2?: GdcApi
1469
- dictionary?: GdcApi
1485
+ /** Do not use a union here. */
1486
+ dictionary?: GdcApi & AiApi
1470
1487
  allowCaseDetails?: AllowCaseDetails
1471
1488
  isGeneSetTermdb?: boolean
1472
1489
  /** Searches the genedb alias list to return the genecode ID */
package/src/index.ts CHANGED
@@ -5,6 +5,8 @@ export * from './termsetting.ts'
5
5
  export * from './filter.ts'
6
6
  export * from './termdb.matrix.ts'
7
7
  export * from './routes/routeApi.ts'
8
+ export * from './routes/aiProjectList.ts'
9
+ export * from './routes/aiProjectAdmin.ts'
8
10
  export * from './routes/brainImaging.ts'
9
11
  export * from './routes/brainImagingSamples.ts'
10
12
  export * from './routes/burden.ts'
package/src/routes/aiProjectAdmin.ts ADDED
@@ -0,0 +1,26 @@
1
+ import type { RoutePayload } from './routeApi.ts'
2
+
3
+ export type AIProjectAdminRequest = {
4
+ genome: string
5
+ dslabel: string
6
+ project: {
7
+ name: string
8
+ id?: number
9
+ fitler?: string
10
+ classes?: any[]
11
+ }
12
+ }
13
+
14
+ export type AIProjectAdminResponse = {
15
+ status: 'ok' | 'error'
16
+ error?: string
17
+ }
18
+
19
+ export const aiProjectAdminPayload: RoutePayload = {
20
+ request: {
21
+ typeId: 'AIProjectAdminRequest'
22
+ },
23
+ response: {
24
+ typeId: 'AIProjectAdminResponse'
25
+ }
26
+ }
package/src/routes/aiProjectList.ts ADDED
@@ -0,0 +1,20 @@
1
+ import type { RoutePayload } from './routeApi.ts'
2
+
3
+ export type AIProjectListRequest = {
4
+ genome: string
5
+ dslabel: string
6
+ }
7
+
8
+ export type AIProjectListResponse = {
9
+ status: 'ok' | 'error'
10
+ error?: string
11
+ }
12
+
13
+ export const aiProjectListPayload: RoutePayload = {
14
+ request: {
15
+ typeId: 'AIProjectListRequest'
16
+ },
17
+ response: {
18
+ typeId: 'AIProjectListResponse'
19
+ }
20
+ }
package/src/routes/samplewsimages.ts CHANGED
@@ -6,7 +6,6 @@ export type SampleWSImagesRequest = {
6
6
  dslabel: string
7
7
  sample_id: string
8
8
  wsimage: string
9
- index: number
10
9
  }
11
10
 
12
11
  export type SampleWSImagesResponse = {
@@ -17,14 +16,33 @@ export type WSImage = {
17
16
  filename: string
18
17
  overlays?: Array<string>
19
18
  predictionLayers?: Array<string>
20
- zoomInPoints?: Array<[number, number]>
21
19
  metadata: string
22
- annotationsData?: { zoomCoordinates: [number, number]; type: string; class: string; uncertainty: number }[]
23
- classes?: WSIClass[]
20
+ annotationsData?: Array<Annotation>
21
+ predictions?: Array<Prediction>
22
+ classes?: Array<WSIClass>
24
23
  /** ds defined uncertainity labels and colors */
25
24
  uncertainty?: any
26
25
  /** Color to highlight active patches */
27
26
  activePatchColor?: string
27
+ /** Tile size in pixels needed for AI scripts */
28
+ tileSize?: number
29
+ }
30
+
31
+ export type Annotation = {
32
+ zoomCoordinates: [number, number]
33
+ class: string
34
+ }
35
+
36
+ export type Prediction = {
37
+ zoomCoordinates: [number, number]
38
+ type: string
39
+ class: string
40
+ uncertainty: number
41
+ }
42
+
43
+ export type TileSelection = {
44
+ zoomCoordinates: [number, number]
45
+ class?: string
28
46
  }
29
47
 
30
48
  export const sampleWSImagesPayload: RoutePayload = {