@sjcrh/proteinpaint-types 2.132.1-1 → 2.133.3-0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (16) hide show
  1. package/dist/chunk-EGEOFGXO.js +273 -0
  2. package/dist/chunk-O7IJ2JNI.js +101 -0
  3. package/dist/{chunk-UZH5HOBP.js → chunk-ROVWURCJ.js} +29 -3
  4. package/dist/{chunk-7YC2GEEO.js → chunk-TCSJGKT3.js} +5 -1
  5. package/dist/gdc.grin2.js +1 -1
  6. package/dist/index.js +25 -17
  7. package/dist/sampleWsiAiApi.js +11 -0
  8. package/dist/samplewsimages.js +1 -1
  9. package/dist/wsimages.js +1 -1
  10. package/package.json +1 -1
  11. package/src/dataset.ts +15 -2
  12. package/src/routes/gdc.grin2.ts +2 -0
  13. package/src/routes/sampleWsiAiApi.ts +21 -0
  14. package/src/routes/samplewsimages.ts +9 -0
  15. package/src/routes/wsimages.ts +11 -0
  16. package/dist/chunk-D5OG676D.js +0 -166
package/dist/chunk-EGEOFGXO.js ADDED
@@ -0,0 +1,273 @@
1
+ import {
2
+ __toESM,
3
+ require_lib
4
+ } from "./chunk-CNSSF43V.js";
5
+
6
+ // dist/samplewsimages.ts
7
+ var import_typia = __toESM(require_lib(), 1);
8
+
9
+ // src/routes/samplewsimages.ts
10
+ var sampleWSImagesPayload = {
11
+ request: {
12
+ typeId: "SampleWSImagesRequest"
13
+ },
14
+ response: {
15
+ typeId: "SampleWSImagesResponse"
16
+ }
17
+ // examples: []
18
+ };
19
+
20
+ // dist/samplewsimages.ts
21
+ var validSampleWSImagesRequest = (input) => {
22
+ const errors = [];
23
+ const __is = (input2) => {
24
+ return "object" === typeof input2 && null !== input2 && ("string" === typeof input2.genome && "string" === typeof input2.dslabel && "string" === typeof input2.sample_id && "string" === typeof input2.wsimage && "number" === typeof input2.index);
25
+ };
26
+ if (false === __is(input)) {
27
+ const $report = import_typia.createValidate.report(errors);
28
+ ((input2, _path, _exceptionable = true) => {
29
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.genome || $report(_exceptionable2, {
30
+ path: _path2 + ".genome",
31
+ expected: "string",
32
+ value: input3.genome
33
+ }), "string" === typeof input3.dslabel || $report(_exceptionable2, {
34
+ path: _path2 + ".dslabel",
35
+ expected: "string",
36
+ value: input3.dslabel
37
+ }), "string" === typeof input3.sample_id || $report(_exceptionable2, {
38
+ path: _path2 + ".sample_id",
39
+ expected: "string",
40
+ value: input3.sample_id
41
+ }), "string" === typeof input3.wsimage || $report(_exceptionable2, {
42
+ path: _path2 + ".wsimage",
43
+ expected: "string",
44
+ value: input3.wsimage
45
+ }), "number" === typeof input3.index || $report(_exceptionable2, {
46
+ path: _path2 + ".index",
47
+ expected: "number",
48
+ value: input3.index
49
+ })].every((flag) => flag);
50
+ return ("object" === typeof input2 && null !== input2 || $report(true, {
51
+ path: _path + "",
52
+ expected: "SampleWSImagesRequest",
53
+ value: input2
54
+ })) && $vo0(input2, _path + "", true) || $report(true, {
55
+ path: _path + "",
56
+ expected: "SampleWSImagesRequest",
57
+ value: input2
58
+ });
59
+ })(input, "$input", true);
60
+ }
61
+ const success = 0 === errors.length;
62
+ return {
63
+ success,
64
+ errors,
65
+ data: success ? input : void 0
66
+ };
67
+ };
68
+ var validSampleWSImagesResponse = (input) => {
69
+ const errors = [];
70
+ const __is = (input2) => {
71
+ const $io0 = (input3) => Array.isArray(input3.sampleWSImages) && input3.sampleWSImages.every((elem) => "object" === typeof elem && null !== elem && $io1(elem));
72
+ const $io1 = (input3) => "string" === typeof input3.filename && (void 0 === input3.overlays || Array.isArray(input3.overlays) && input3.overlays.every((elem) => "string" === typeof elem)) && (void 0 === input3.predictionLayers || Array.isArray(input3.predictionLayers) && input3.predictionLayers.every((elem) => "string" === typeof elem)) && (void 0 === input3.zoomInPoints || Array.isArray(input3.zoomInPoints) && input3.zoomInPoints.every((elem) => Array.isArray(elem) && (elem.length === 2 && "number" === typeof elem[0] && "number" === typeof elem[1]))) && "string" === typeof input3.metadata && (void 0 === input3.annotationsData || Array.isArray(input3.annotationsData) && input3.annotationsData.every((elem) => "object" === typeof elem && null !== elem && $io2(elem))) && (void 0 === input3.classes || Array.isArray(input3.classes) && input3.classes.every((elem) => "object" === typeof elem && null !== elem && $io3(elem))) && true && (void 0 === input3.activePatchColor || "string" === typeof input3.activePatchColor);
73
+ const $io2 = (input3) => Array.isArray(input3.zoomCoordinates) && (input3.zoomCoordinates.length === 2 && "number" === typeof input3.zoomCoordinates[0] && "number" === typeof input3.zoomCoordinates[1]) && "string" === typeof input3.type && "string" === typeof input3["class"] && "number" === typeof input3.uncertainty;
74
+ const $io3 = (input3) => "number" === typeof input3.id && "string" === typeof input3.shortcut && "string" === typeof input3.label && "string" === typeof input3.color;
75
+ return "object" === typeof input2 && null !== input2 && $io0(input2);
76
+ };
77
+ if (false === __is(input)) {
78
+ const $report = import_typia.createValidate.report(errors);
79
+ ((input2, _path, _exceptionable = true) => {
80
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => [(Array.isArray(input3.sampleWSImages) || $report(_exceptionable2, {
81
+ path: _path2 + ".sampleWSImages",
82
+ expected: "Array<WSImage>",
83
+ value: input3.sampleWSImages
84
+ })) && input3.sampleWSImages.map((elem, _index1) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
85
+ path: _path2 + ".sampleWSImages[" + _index1 + "]",
86
+ expected: "WSImage",
87
+ value: elem
88
+ })) && $vo1(elem, _path2 + ".sampleWSImages[" + _index1 + "]", _exceptionable2) || $report(_exceptionable2, {
89
+ path: _path2 + ".sampleWSImages[" + _index1 + "]",
90
+ expected: "WSImage",
91
+ value: elem
92
+ })).every((flag) => flag) || $report(_exceptionable2, {
93
+ path: _path2 + ".sampleWSImages",
94
+ expected: "Array<WSImage>",
95
+ value: input3.sampleWSImages
96
+ })].every((flag) => flag);
97
+ const $vo1 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.filename || $report(_exceptionable2, {
98
+ path: _path2 + ".filename",
99
+ expected: "string",
100
+ value: input3.filename
101
+ }), void 0 === input3.overlays || (Array.isArray(input3.overlays) || $report(_exceptionable2, {
102
+ path: _path2 + ".overlays",
103
+ expected: "(Array<string> | undefined)",
104
+ value: input3.overlays
105
+ })) && input3.overlays.map((elem, _index2) => "string" === typeof elem || $report(_exceptionable2, {
106
+ path: _path2 + ".overlays[" + _index2 + "]",
107
+ expected: "string",
108
+ value: elem
109
+ })).every((flag) => flag) || $report(_exceptionable2, {
110
+ path: _path2 + ".overlays",
111
+ expected: "(Array<string> | undefined)",
112
+ value: input3.overlays
113
+ }), void 0 === input3.predictionLayers || (Array.isArray(input3.predictionLayers) || $report(_exceptionable2, {
114
+ path: _path2 + ".predictionLayers",
115
+ expected: "(Array<string> | undefined)",
116
+ value: input3.predictionLayers
117
+ })) && input3.predictionLayers.map((elem, _index3) => "string" === typeof elem || $report(_exceptionable2, {
118
+ path: _path2 + ".predictionLayers[" + _index3 + "]",
119
+ expected: "string",
120
+ value: elem
121
+ })).every((flag) => flag) || $report(_exceptionable2, {
122
+ path: _path2 + ".predictionLayers",
123
+ expected: "(Array<string> | undefined)",
124
+ value: input3.predictionLayers
125
+ }), void 0 === input3.zoomInPoints || (Array.isArray(input3.zoomInPoints) || $report(_exceptionable2, {
126
+ path: _path2 + ".zoomInPoints",
127
+ expected: "(Array<[number, number]> | undefined)",
128
+ value: input3.zoomInPoints
129
+ })) && input3.zoomInPoints.map((elem, _index4) => (Array.isArray(elem) || $report(_exceptionable2, {
130
+ path: _path2 + ".zoomInPoints[" + _index4 + "]",
131
+ expected: "[number, number]",
132
+ value: elem
133
+ })) && ((elem.length === 2 || $report(_exceptionable2, {
134
+ path: _path2 + ".zoomInPoints[" + _index4 + "]",
135
+ expected: "[number, number]",
136
+ value: elem
137
+ })) && [
138
+ "number" === typeof elem[0] || $report(_exceptionable2, {
139
+ path: _path2 + ".zoomInPoints[" + _index4 + "][0]",
140
+ expected: "number",
141
+ value: elem[0]
142
+ }),
143
+ "number" === typeof elem[1] || $report(_exceptionable2, {
144
+ path: _path2 + ".zoomInPoints[" + _index4 + "][1]",
145
+ expected: "number",
146
+ value: elem[1]
147
+ })
148
+ ].every((flag) => flag)) || $report(_exceptionable2, {
149
+ path: _path2 + ".zoomInPoints[" + _index4 + "]",
150
+ expected: "[number, number]",
151
+ value: elem
152
+ })).every((flag) => flag) || $report(_exceptionable2, {
153
+ path: _path2 + ".zoomInPoints",
154
+ expected: "(Array<[number, number]> | undefined)",
155
+ value: input3.zoomInPoints
156
+ }), "string" === typeof input3.metadata || $report(_exceptionable2, {
157
+ path: _path2 + ".metadata",
158
+ expected: "string",
159
+ value: input3.metadata
160
+ }), void 0 === input3.annotationsData || (Array.isArray(input3.annotationsData) || $report(_exceptionable2, {
161
+ path: _path2 + ".annotationsData",
162
+ expected: "(Array<__type> | undefined)",
163
+ value: input3.annotationsData
164
+ })) && input3.annotationsData.map((elem, _index5) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
165
+ path: _path2 + ".annotationsData[" + _index5 + "]",
166
+ expected: "__type",
167
+ value: elem
168
+ })) && $vo2(elem, _path2 + ".annotationsData[" + _index5 + "]", _exceptionable2) || $report(_exceptionable2, {
169
+ path: _path2 + ".annotationsData[" + _index5 + "]",
170
+ expected: "__type",
171
+ value: elem
172
+ })).every((flag) => flag) || $report(_exceptionable2, {
173
+ path: _path2 + ".annotationsData",
174
+ expected: "(Array<__type> | undefined)",
175
+ value: input3.annotationsData
176
+ }), void 0 === input3.classes || (Array.isArray(input3.classes) || $report(_exceptionable2, {
177
+ path: _path2 + ".classes",
178
+ expected: "(Array<WSIClass> | undefined)",
179
+ value: input3.classes
180
+ })) && input3.classes.map((elem, _index6) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
181
+ path: _path2 + ".classes[" + _index6 + "]",
182
+ expected: "WSIClass",
183
+ value: elem
184
+ })) && $vo3(elem, _path2 + ".classes[" + _index6 + "]", _exceptionable2) || $report(_exceptionable2, {
185
+ path: _path2 + ".classes[" + _index6 + "]",
186
+ expected: "WSIClass",
187
+ value: elem
188
+ })).every((flag) => flag) || $report(_exceptionable2, {
189
+ path: _path2 + ".classes",
190
+ expected: "(Array<WSIClass> | undefined)",
191
+ value: input3.classes
192
+ }), true, void 0 === input3.activePatchColor || "string" === typeof input3.activePatchColor || $report(_exceptionable2, {
193
+ path: _path2 + ".activePatchColor",
194
+ expected: "(string | undefined)",
195
+ value: input3.activePatchColor
196
+ })].every((flag) => flag);
197
+ const $vo2 = (input3, _path2, _exceptionable2 = true) => [(Array.isArray(input3.zoomCoordinates) || $report(_exceptionable2, {
198
+ path: _path2 + ".zoomCoordinates",
199
+ expected: "[number, number]",
200
+ value: input3.zoomCoordinates
201
+ })) && ((input3.zoomCoordinates.length === 2 || $report(_exceptionable2, {
202
+ path: _path2 + ".zoomCoordinates",
203
+ expected: "[number, number]",
204
+ value: input3.zoomCoordinates
205
+ })) && [
206
+ "number" === typeof input3.zoomCoordinates[0] || $report(_exceptionable2, {
207
+ path: _path2 + ".zoomCoordinates[0]",
208
+ expected: "number",
209
+ value: input3.zoomCoordinates[0]
210
+ }),
211
+ "number" === typeof input3.zoomCoordinates[1] || $report(_exceptionable2, {
212
+ path: _path2 + ".zoomCoordinates[1]",
213
+ expected: "number",
214
+ value: input3.zoomCoordinates[1]
215
+ })
216
+ ].every((flag) => flag)) || $report(_exceptionable2, {
217
+ path: _path2 + ".zoomCoordinates",
218
+ expected: "[number, number]",
219
+ value: input3.zoomCoordinates
220
+ }), "string" === typeof input3.type || $report(_exceptionable2, {
221
+ path: _path2 + ".type",
222
+ expected: "string",
223
+ value: input3.type
224
+ }), "string" === typeof input3["class"] || $report(_exceptionable2, {
225
+ path: _path2 + '["class"]',
226
+ expected: "string",
227
+ value: input3["class"]
228
+ }), "number" === typeof input3.uncertainty || $report(_exceptionable2, {
229
+ path: _path2 + ".uncertainty",
230
+ expected: "number",
231
+ value: input3.uncertainty
232
+ })].every((flag) => flag);
233
+ const $vo3 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.id || $report(_exceptionable2, {
234
+ path: _path2 + ".id",
235
+ expected: "number",
236
+ value: input3.id
237
+ }), "string" === typeof input3.shortcut || $report(_exceptionable2, {
238
+ path: _path2 + ".shortcut",
239
+ expected: "string",
240
+ value: input3.shortcut
241
+ }), "string" === typeof input3.label || $report(_exceptionable2, {
242
+ path: _path2 + ".label",
243
+ expected: "string",
244
+ value: input3.label
245
+ }), "string" === typeof input3.color || $report(_exceptionable2, {
246
+ path: _path2 + ".color",
247
+ expected: "string",
248
+ value: input3.color
249
+ })].every((flag) => flag);
250
+ return ("object" === typeof input2 && null !== input2 || $report(true, {
251
+ path: _path + "",
252
+ expected: "SampleWSImagesResponse",
253
+ value: input2
254
+ })) && $vo0(input2, _path + "", true) || $report(true, {
255
+ path: _path + "",
256
+ expected: "SampleWSImagesResponse",
257
+ value: input2
258
+ });
259
+ })(input, "$input", true);
260
+ }
261
+ const success = 0 === errors.length;
262
+ return {
263
+ success,
264
+ errors,
265
+ data: success ? input : void 0
266
+ };
267
+ };
268
+
269
+ export {
270
+ sampleWSImagesPayload,
271
+ validSampleWSImagesRequest,
272
+ validSampleWSImagesResponse
273
+ };
package/dist/chunk-O7IJ2JNI.js ADDED
@@ -0,0 +1,101 @@
1
+ import {
2
+ __toESM,
3
+ require_lib
4
+ } from "./chunk-CNSSF43V.js";
5
+
6
+ // dist/sampleWsiAiApi.ts
7
+ var import_typia = __toESM(require_lib(), 1);
8
+
9
+ // src/routes/sampleWsiAiApi.ts
10
+ var sampleWsiAiApiPayload = {
11
+ request: {
12
+ typeId: "SampleWSIAiApiRequest"
13
+ },
14
+ response: {
15
+ typeId: "SampleWSIAiApiResponse"
16
+ }
17
+ };
18
+
19
+ // dist/sampleWsiAiApi.ts
20
+ var validSampleWSIAiApiRequest = (input) => {
21
+ const errors = [];
22
+ const __is = (input2) => {
23
+ const $io0 = (input3) => "number" === typeof input3.index && "boolean" === typeof input3.confirmed && (null === input3["class"] || "number" === typeof input3["class"]);
24
+ return "object" === typeof input2 && null !== input2 && $io0(input2);
25
+ };
26
+ if (false === __is(input)) {
27
+ const $report = import_typia.createValidate.report(errors);
28
+ ((input2, _path, _exceptionable = true) => {
29
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.index || $report(_exceptionable2, {
30
+ path: _path2 + ".index",
31
+ expected: "number",
32
+ value: input3.index
33
+ }), "boolean" === typeof input3.confirmed || $report(_exceptionable2, {
34
+ path: _path2 + ".confirmed",
35
+ expected: "boolean",
36
+ value: input3.confirmed
37
+ }), null === input3["class"] || "number" === typeof input3["class"] || $report(_exceptionable2, {
38
+ path: _path2 + '["class"]',
39
+ expected: "(null | number)",
40
+ value: input3["class"]
41
+ })].every((flag) => flag);
42
+ return ("object" === typeof input2 && null !== input2 || $report(true, {
43
+ path: _path + "",
44
+ expected: "SampleWSIAiApiRequest",
45
+ value: input2
46
+ })) && $vo0(input2, _path + "", true) || $report(true, {
47
+ path: _path + "",
48
+ expected: "SampleWSIAiApiRequest",
49
+ value: input2
50
+ });
51
+ })(input, "$input", true);
52
+ }
53
+ const success = 0 === errors.length;
54
+ return {
55
+ success,
56
+ errors,
57
+ data: success ? input : void 0
58
+ };
59
+ };
60
+ var validSampleWSIAiApiResponse = (input) => {
61
+ const errors = [];
62
+ const __is = (input2) => {
63
+ const $io0 = (input3) => ("error" === input3.status || "ok" === input3.status) && (void 0 === input3.error || "string" === typeof input3.error);
64
+ return "object" === typeof input2 && null !== input2 && $io0(input2);
65
+ };
66
+ if (false === __is(input)) {
67
+ const $report = import_typia.createValidate.report(errors);
68
+ ((input2, _path, _exceptionable = true) => {
69
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["error" === input3.status || "ok" === input3.status || $report(_exceptionable2, {
70
+ path: _path2 + ".status",
71
+ expected: '("error" | "ok")',
72
+ value: input3.status
73
+ }), void 0 === input3.error || "string" === typeof input3.error || $report(_exceptionable2, {
74
+ path: _path2 + ".error",
75
+ expected: "(string | undefined)",
76
+ value: input3.error
77
+ })].every((flag) => flag);
78
+ return ("object" === typeof input2 && null !== input2 || $report(true, {
79
+ path: _path + "",
80
+ expected: "SampleWSIAiApiResponse",
81
+ value: input2
82
+ })) && $vo0(input2, _path + "", true) || $report(true, {
83
+ path: _path + "",
84
+ expected: "SampleWSIAiApiResponse",
85
+ value: input2
86
+ });
87
+ })(input, "$input", true);
88
+ }
89
+ const success = 0 === errors.length;
90
+ return {
91
+ success,
92
+ errors,
93
+ data: success ? input : void 0
94
+ };
95
+ };
96
+
97
+ export {
98
+ sampleWsiAiApiPayload,
99
+ validSampleWSIAiApiRequest,
100
+ validSampleWSIAiApiResponse
101
+ };
package/dist/{chunk-UZH5HOBP.js → chunk-ROVWURCJ.js} RENAMED
@@ -64,7 +64,8 @@ var validWSImagesRequest = (input) => {
64
64
  var validWSImagesResponse = (input) => {
65
65
  const errors = [];
66
66
  const __is = (input2) => {
67
- const $io0 = (input3) => (void 0 === input3.wsiSessionId || "string" === typeof input3.wsiSessionId) && (Array.isArray(input3.slide_dimensions) && input3.slide_dimensions.every((elem) => "number" === typeof elem)) && "string" === typeof input3.status && (void 0 === input3.error || "string" === typeof input3.error);
67
+ const $io0 = (input3) => (void 0 === input3.wsiSessionId || "string" === typeof input3.wsiSessionId) && (void 0 === input3.overlays || Array.isArray(input3.overlays) && input3.overlays.every((elem) => "object" === typeof elem && null !== elem && $io1(elem))) && (Array.isArray(input3.slide_dimensions) && input3.slide_dimensions.every((elem) => "number" === typeof elem)) && "string" === typeof input3.status && (void 0 === input3.error || "string" === typeof input3.error);
68
+ const $io1 = (input3) => "string" === typeof input3.layerNumber && ("Prediction" === input3.predictionOverlayType || "Uncertainty" === input3.predictionOverlayType);
68
69
  return "object" === typeof input2 && null !== input2 && $io0(input2);
69
70
  };
70
71
  if (false === __is(input)) {
@@ -74,12 +75,28 @@ var validWSImagesResponse = (input) => {
74
75
  path: _path2 + ".wsiSessionId",
75
76
  expected: "(string | undefined)",
76
77
  value: input3.wsiSessionId
78
+ }), void 0 === input3.overlays || (Array.isArray(input3.overlays) || $report(_exceptionable2, {
79
+ path: _path2 + ".overlays",
80
+ expected: "(Array<PredictionOverlay> | undefined)",
81
+ value: input3.overlays
82
+ })) && input3.overlays.map((elem, _index1) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
83
+ path: _path2 + ".overlays[" + _index1 + "]",
84
+ expected: "PredictionOverlay",
85
+ value: elem
86
+ })) && $vo1(elem, _path2 + ".overlays[" + _index1 + "]", _exceptionable2) || $report(_exceptionable2, {
87
+ path: _path2 + ".overlays[" + _index1 + "]",
88
+ expected: "PredictionOverlay",
89
+ value: elem
90
+ })).every((flag) => flag) || $report(_exceptionable2, {
91
+ path: _path2 + ".overlays",
92
+ expected: "(Array<PredictionOverlay> | undefined)",
93
+ value: input3.overlays
77
94
  }), (Array.isArray(input3.slide_dimensions) || $report(_exceptionable2, {
78
95
  path: _path2 + ".slide_dimensions",
79
96
  expected: "Array<number>",
80
97
  value: input3.slide_dimensions
81
- })) && input3.slide_dimensions.map((elem, _index1) => "number" === typeof elem || $report(_exceptionable2, {
82
- path: _path2 + ".slide_dimensions[" + _index1 + "]",
98
+ })) && input3.slide_dimensions.map((elem, _index2) => "number" === typeof elem || $report(_exceptionable2, {
99
+ path: _path2 + ".slide_dimensions[" + _index2 + "]",
83
100
  expected: "number",
84
101
  value: elem
85
102
  })).every((flag) => flag) || $report(_exceptionable2, {
@@ -95,6 +112,15 @@ var validWSImagesResponse = (input) => {
95
112
  expected: "(string | undefined)",
96
113
  value: input3.error
97
114
  })].every((flag) => flag);
115
+ const $vo1 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.layerNumber || $report(_exceptionable2, {
116
+ path: _path2 + ".layerNumber",
117
+ expected: "string",
118
+ value: input3.layerNumber
119
+ }), "Prediction" === input3.predictionOverlayType || "Uncertainty" === input3.predictionOverlayType || $report(_exceptionable2, {
120
+ path: _path2 + ".predictionOverlayType",
121
+ expected: '("Prediction" | "Uncertainty")',
122
+ value: input3.predictionOverlayType
123
+ })].every((flag) => flag);
98
124
  return ("object" === typeof input2 && null !== input2 || $report(true, {
99
125
  path: _path + "",
100
126
  expected: "WSImagesResponse",
package/dist/{chunk-7YC2GEEO.js → chunk-TCSJGKT3.js} RENAMED
@@ -336,7 +336,7 @@ var validRunGRIN2Request = (input) => {
336
336
  });
337
337
  const $io2 = (input3) => (void 0 === input3.maf || "string" === typeof input3.maf) && (void 0 === input3.cnv || "string" === typeof input3.cnv);
338
338
  const $io3 = (input3) => (void 0 === input3.minTotalDepth || "number" === typeof input3.minTotalDepth) && (void 0 === input3.minAltAlleleCount || "number" === typeof input3.minAltAlleleCount) && (void 0 === input3.consequences || Array.isArray(input3.consequences) && input3.consequences.every((elem) => "string" === typeof elem)) && (void 0 === input3.hyperMutator || "number" === typeof input3.hyperMutator);
339
- const $io4 = (input3) => (void 0 === input3.lossThreshold || "number" === typeof input3.lossThreshold) && (void 0 === input3.gainThreshold || "number" === typeof input3.gainThreshold) && (void 0 === input3.segLength || "number" === typeof input3.segLength);
339
+ const $io4 = (input3) => (void 0 === input3.lossThreshold || "number" === typeof input3.lossThreshold) && (void 0 === input3.gainThreshold || "number" === typeof input3.gainThreshold) && (void 0 === input3.segLength || "number" === typeof input3.segLength) && (void 0 === input3.hyperMutator || "number" === typeof input3.hyperMutator);
340
340
  return "object" === typeof input2 && null !== input2 && $io0(input2);
341
341
  };
342
342
  if (false === __is(input)) {
@@ -430,6 +430,10 @@ var validRunGRIN2Request = (input) => {
430
430
  path: _path2 + ".segLength",
431
431
  expected: "(number | undefined)",
432
432
  value: input3.segLength
433
+ }), void 0 === input3.hyperMutator || "number" === typeof input3.hyperMutator || $report(_exceptionable2, {
434
+ path: _path2 + ".hyperMutator",
435
+ expected: "(number | undefined)",
436
+ value: input3.hyperMutator
433
437
  })].every((flag) => flag);
434
438
  return ("object" === typeof input2 && null !== input2 || $report(true, {
435
439
  path: _path + "",
package/dist/gdc.grin2.js CHANGED
@@ -5,7 +5,7 @@ import {
5
5
  validGdcGRIN2listResponse,
6
6
  validRunGRIN2Request,
7
7
  validRunGRIN2Response
8
- } from "./chunk-7YC2GEEO.js";
8
+ } from "./chunk-TCSJGKT3.js";
9
9
  import "./chunk-CNSSF43V.js";
10
10
  export {
11
11
  gdcGRIN2listPayload,
package/dist/index.js CHANGED
@@ -1,3 +1,8 @@
1
+ import {
2
+ termdbTopTermsByTypePayload,
3
+ validTermdbTopTermsByTypeRequest,
4
+ validTermdbTopTermsByTypeResponse
5
+ } from "./chunk-7RY7HC24.js";
1
6
  import {
2
7
  termdbTopVariablyExpressedGenesPayload,
3
8
  validTermdbTopVariablyExpressedGenesRequest,
@@ -17,12 +22,17 @@ import {
17
22
  validWSImagesRequest,
18
23
  validWSImagesResponse,
19
24
  wsImagesPayload
20
- } from "./chunk-UZH5HOBP.js";
25
+ } from "./chunk-ROVWURCJ.js";
21
26
  import {
22
27
  validWSISamplesRequest,
23
28
  validWSISamplesResponse,
24
29
  wsiSamplesPayload
25
30
  } from "./chunk-W6NLM363.js";
31
+ import {
32
+ termdbSampleImagesPayload,
33
+ validTermdbSampleImagesRequest,
34
+ validTermdbSampleImagesResponse
35
+ } from "./chunk-X2CX5K24.js";
26
36
  import {
27
37
  termdbSingleSampleMutationPayload,
28
38
  validTermdbSingleSampleMutationRequest,
@@ -59,10 +69,10 @@ import {
59
69
  validtopMutatedGeneResponse
60
70
  } from "./chunk-YGX6BZZY.js";
61
71
  import {
62
- termdbTopTermsByTypePayload,
63
- validTermdbTopTermsByTypeRequest,
64
- validTermdbTopTermsByTypeResponse
65
- } from "./chunk-7RY7HC24.js";
72
+ termdbCategoriesPayload,
73
+ validCategoriesRequest,
74
+ validCategoriesResponse
75
+ } from "./chunk-QHN3YO6Q.js";
66
76
  import {
67
77
  termdbClusterPayload,
68
78
  validTermdbClusterRequest,
@@ -98,11 +108,6 @@ import {
98
108
  validRootTermRequest,
99
109
  validRootTermResponse
100
110
  } from "./chunk-AASWRJMS.js";
101
- import {
102
- termdbSampleImagesPayload,
103
- validTermdbSampleImagesRequest,
104
- validTermdbSampleImagesResponse
105
- } from "./chunk-X2CX5K24.js";
106
111
  import {
107
112
  ProfileFiltersPayload,
108
113
  validProfileFiltersRequest,
@@ -118,11 +123,16 @@ import {
118
123
  validProfileScoresRequest,
119
124
  validProfileScoresResponse
120
125
  } from "./chunk-IJLAEEK7.js";
126
+ import {
127
+ sampleWsiAiApiPayload,
128
+ validSampleWSIAiApiRequest,
129
+ validSampleWSIAiApiResponse
130
+ } from "./chunk-O7IJ2JNI.js";
121
131
  import {
122
132
  sampleWSImagesPayload,
123
133
  validSampleWSImagesRequest,
124
134
  validSampleWSImagesResponse
125
- } from "./chunk-D5OG676D.js";
135
+ } from "./chunk-EGEOFGXO.js";
126
136
  import {
127
137
  snpPayload,
128
138
  validSnpRequest,
@@ -138,11 +148,6 @@ import {
138
148
  validBoxPlotRequest,
139
149
  validBoxPlotResponse
140
150
  } from "./chunk-UMGJNQ2O.js";
141
- import {
142
- termdbCategoriesPayload,
143
- validCategoriesRequest,
144
- validCategoriesResponse
145
- } from "./chunk-QHN3YO6Q.js";
146
151
  import {
147
152
  hicdataPayload,
148
153
  validHicdataRequest,
@@ -190,7 +195,7 @@ import {
190
195
  validGdcGRIN2listResponse,
191
196
  validRunGRIN2Request,
192
197
  validRunGRIN2Response
193
- } from "./chunk-7YC2GEEO.js";
198
+ } from "./chunk-TCSJGKT3.js";
194
199
  import {
195
200
  gdcMafPayload,
196
201
  validGdcMafRequest,
@@ -293,6 +298,7 @@ export {
293
298
  rootTermPayload,
294
299
  runGRIN2Payload,
295
300
  sampleWSImagesPayload,
301
+ sampleWsiAiApiPayload,
296
302
  snpPayload,
297
303
  termChildrenPayload,
298
304
  termdbCategoriesPayload,
@@ -373,6 +379,8 @@ export {
373
379
  validRootTermResponse,
374
380
  validRunGRIN2Request,
375
381
  validRunGRIN2Response,
382
+ validSampleWSIAiApiRequest,
383
+ validSampleWSIAiApiResponse,
376
384
  validSampleWSImagesRequest,
377
385
  validSampleWSImagesResponse,
378
386
  validSnpRequest,
package/dist/sampleWsiAiApi.js ADDED
@@ -0,0 +1,11 @@
1
+ import {
2
+ sampleWsiAiApiPayload,
3
+ validSampleWSIAiApiRequest,
4
+ validSampleWSIAiApiResponse
5
+ } from "./chunk-O7IJ2JNI.js";
6
+ import "./chunk-CNSSF43V.js";
7
+ export {
8
+ sampleWsiAiApiPayload,
9
+ validSampleWSIAiApiRequest,
10
+ validSampleWSIAiApiResponse
11
+ };
package/dist/samplewsimages.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  sampleWSImagesPayload,
3
3
  validSampleWSImagesRequest,
4
4
  validSampleWSImagesResponse
5
- } from "./chunk-D5OG676D.js";
5
+ } from "./chunk-EGEOFGXO.js";
6
6
  import "./chunk-CNSSF43V.js";
7
7
  export {
8
8
  sampleWSImagesPayload,
package/dist/wsimages.js CHANGED
@@ -2,7 +2,7 @@ import {
2
2
  validWSImagesRequest,
3
3
  validWSImagesResponse,
4
4
  wsImagesPayload
5
- } from "./chunk-UZH5HOBP.js";
5
+ } from "./chunk-ROVWURCJ.js";
6
6
  import "./chunk-CNSSF43V.js";
7
7
  export {
8
8
  validWSImagesRequest,
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@sjcrh/proteinpaint-types",
3
- "version": "2.132.1-1",
3
+ "version": "2.133.3-0",
4
4
  "type": "module",
5
5
  "description": "Shared type definitions between ProteinPaint server and client code",
6
6
  "main": "src/index.ts",
package/src/dataset.ts CHANGED
@@ -971,19 +971,32 @@ export type WSImages = {
971
971
  required; for both cases where image files are hosted locally, or loaded from remote via ds-supplied getter
972
972
  */
973
973
  imageBySampleFolder: string
974
-
974
+ activePatchColor?: string
975
+ predictionColor?: Array<number>
975
976
  annotationsColor?: Array<number>
977
+ classes?: WSIClass[]
978
+ uncertainty?: { color: string; label: string }[]
976
979
 
977
980
  /** either ds supplied or dynamically added on launch with built in logic (retrieve the sample list from the wsimages table) */
978
981
  getSamples?: () => Promise<Array<WSISample>>
979
982
  /** either ds supplied or dynamically added on launch with built in logic */
980
983
  getWSImages?: (sampleName: string) => Promise<WSImage[]>
981
984
  /** ds supplied */
985
+ getWSIPredictionPatches?: (sampleName: string, wsiImage: string) => Promise<string[]>
986
+ /** ds supplied */
982
987
  getWSIAnnotations?: (sampleName: string, wsiImage: string) => Promise<string[]>
983
988
  /** ds supplied */
984
- getZoomInPoints?: (sampleName: string, wsiImage: string) => Promise<Array<[number, number]>>
989
+ getZoomInPoints?: (sampleName: string, wsiImage: string, index: number) => Promise<Array<[number, number]>>
990
+ /** ds supplied */
991
+ makeGeoJson?: (sampleId: string, wsiImage: string) => void
992
+ /** ds supplied */
993
+ getWSIPredictionOverlay?: (sampleName: string, wsiImage: string) => Promise<string | undefined>
994
+ /** ds supplied */
995
+ getWSIUncertaintyOverlay?: (sampleName: string, wsiImage: string) => Promise<string | undefined>
985
996
  }
986
997
 
998
+ export type WSIClass = { id: number; shortcut: string; label: string; color: string }
999
+
987
1000
  /*** types supporting Termdb ***/
988
1001
 
989
1002
  type TermIds = {
package/src/routes/gdc.grin2.ts CHANGED
@@ -117,6 +117,8 @@ export type RunGRIN2Request = {
117
117
  gainThreshold?: number // Default: 0.3
118
118
  /** Maximum segment length to include (0 = no filter) */
119
119
  segLength?: number // Default: 0
120
+ /** Hypermutator max cut off for CNVs per case */
121
+ hyperMutator?: number // Default: 500
120
122
  }
121
123
  }
122
124
 
package/src/routes/sampleWsiAiApi.ts ADDED
@@ -0,0 +1,21 @@
1
+ import type { RoutePayload } from './routeApi.ts'
2
+
3
+ export type SampleWSIAiApiRequest = {
4
+ index: number
5
+ confirmed: boolean
6
+ class: number | null
7
+ }
8
+
9
+ export type SampleWSIAiApiResponse = {
10
+ status: 'ok' | 'error'
11
+ error?: string
12
+ }
13
+
14
+ export const sampleWsiAiApiPayload: RoutePayload = {
15
+ request: {
16
+ typeId: 'SampleWSIAiApiRequest'
17
+ },
18
+ response: {
19
+ typeId: 'SampleWSIAiApiResponse'
20
+ }
21
+ }
package/src/routes/samplewsimages.ts CHANGED
@@ -1,10 +1,12 @@
1
1
  import type { RoutePayload } from './routeApi.ts'
2
+ import type { WSIClass } from '../dataset.ts'
2
3
 
3
4
  export type SampleWSImagesRequest = {
4
5
  genome: string
5
6
  dslabel: string
6
7
  sample_id: string
7
8
  wsimage: string
9
+ index: number
8
10
  }
9
11
 
10
12
  export type SampleWSImagesResponse = {
@@ -14,8 +16,15 @@ export type SampleWSImagesResponse = {
14
16
  export type WSImage = {
15
17
  filename: string
16
18
  overlays?: Array<string>
19
+ predictionLayers?: Array<string>
17
20
  zoomInPoints?: Array<[number, number]>
18
21
  metadata: string
22
+ annotationsData?: { zoomCoordinates: [number, number]; type: string; class: string; uncertainty: number }[]
23
+ classes?: WSIClass[]
24
+ /** ds defined uncertainity labels and colors */
25
+ uncertainty?: any
26
+ /** Color to highlight active patches */
27
+ activePatchColor?: string
19
28
  }
20
29
 
21
30
  export const sampleWSImagesPayload: RoutePayload = {
package/src/routes/wsimages.ts CHANGED
@@ -10,11 +10,22 @@ export type WSImagesRequest = {
10
10
  export type WSImagesResponse = {
11
11
  // TileServer image session id
12
12
  wsiSessionId?: string
13
+ overlays?: Array<PredictionOverlay>
13
14
  slide_dimensions: number[]
14
15
  status: string
15
16
  error?: string
16
17
  }
17
18
 
19
+ export type PredictionOverlay = {
20
+ layerNumber: string
21
+ predictionOverlayType: PredictionOverlayType
22
+ }
23
+
24
+ export enum PredictionOverlayType {
25
+ PREDICTION = 'Prediction',
26
+ UNCERTAINTY = 'Uncertainty'
27
+ }
28
+
18
29
  export const wsImagesPayload: RoutePayload = {
19
30
  request: {
20
31
  typeId: 'WSImagesRequest'
package/dist/chunk-D5OG676D.js DELETED
@@ -1,166 +0,0 @@
1
- import {
2
- __toESM,
3
- require_lib
4
- } from "./chunk-CNSSF43V.js";
5
-
6
- // dist/samplewsimages.ts
7
- var import_typia = __toESM(require_lib(), 1);
8
-
9
- // src/routes/samplewsimages.ts
10
- var sampleWSImagesPayload = {
11
- request: {
12
- typeId: "SampleWSImagesRequest"
13
- },
14
- response: {
15
- typeId: "SampleWSImagesResponse"
16
- }
17
- // examples: []
18
- };
19
-
20
- // dist/samplewsimages.ts
21
- var validSampleWSImagesRequest = (input) => {
22
- const errors = [];
23
- const __is = (input2) => {
24
- return "object" === typeof input2 && null !== input2 && ("string" === typeof input2.genome && "string" === typeof input2.dslabel && "string" === typeof input2.sample_id && "string" === typeof input2.wsimage);
25
- };
26
- if (false === __is(input)) {
27
- const $report = import_typia.createValidate.report(errors);
28
- ((input2, _path, _exceptionable = true) => {
29
- const $vo0 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.genome || $report(_exceptionable2, {
30
- path: _path2 + ".genome",
31
- expected: "string",
32
- value: input3.genome
33
- }), "string" === typeof input3.dslabel || $report(_exceptionable2, {
34
- path: _path2 + ".dslabel",
35
- expected: "string",
36
- value: input3.dslabel
37
- }), "string" === typeof input3.sample_id || $report(_exceptionable2, {
38
- path: _path2 + ".sample_id",
39
- expected: "string",
40
- value: input3.sample_id
41
- }), "string" === typeof input3.wsimage || $report(_exceptionable2, {
42
- path: _path2 + ".wsimage",
43
- expected: "string",
44
- value: input3.wsimage
45
- })].every((flag) => flag);
46
- return ("object" === typeof input2 && null !== input2 || $report(true, {
47
- path: _path + "",
48
- expected: "SampleWSImagesRequest",
49
- value: input2
50
- })) && $vo0(input2, _path + "", true) || $report(true, {
51
- path: _path + "",
52
- expected: "SampleWSImagesRequest",
53
- value: input2
54
- });
55
- })(input, "$input", true);
56
- }
57
- const success = 0 === errors.length;
58
- return {
59
- success,
60
- errors,
61
- data: success ? input : void 0
62
- };
63
- };
64
- var validSampleWSImagesResponse = (input) => {
65
- const errors = [];
66
- const __is = (input2) => {
67
- const $io0 = (input3) => Array.isArray(input3.sampleWSImages) && input3.sampleWSImages.every((elem) => "object" === typeof elem && null !== elem && $io1(elem));
68
- const $io1 = (input3) => "string" === typeof input3.filename && (void 0 === input3.overlays || Array.isArray(input3.overlays) && input3.overlays.every((elem) => "string" === typeof elem)) && (void 0 === input3.zoomInPoints || Array.isArray(input3.zoomInPoints) && input3.zoomInPoints.every((elem) => Array.isArray(elem) && (elem.length === 2 && "number" === typeof elem[0] && "number" === typeof elem[1]))) && "string" === typeof input3.metadata;
69
- return "object" === typeof input2 && null !== input2 && $io0(input2);
70
- };
71
- if (false === __is(input)) {
72
- const $report = import_typia.createValidate.report(errors);
73
- ((input2, _path, _exceptionable = true) => {
74
- const $vo0 = (input3, _path2, _exceptionable2 = true) => [(Array.isArray(input3.sampleWSImages) || $report(_exceptionable2, {
75
- path: _path2 + ".sampleWSImages",
76
- expected: "Array<WSImage>",
77
- value: input3.sampleWSImages
78
- })) && input3.sampleWSImages.map((elem, _index1) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
79
- path: _path2 + ".sampleWSImages[" + _index1 + "]",
80
- expected: "WSImage",
81
- value: elem
82
- })) && $vo1(elem, _path2 + ".sampleWSImages[" + _index1 + "]", _exceptionable2) || $report(_exceptionable2, {
83
- path: _path2 + ".sampleWSImages[" + _index1 + "]",
84
- expected: "WSImage",
85
- value: elem
86
- })).every((flag) => flag) || $report(_exceptionable2, {
87
- path: _path2 + ".sampleWSImages",
88
- expected: "Array<WSImage>",
89
- value: input3.sampleWSImages
90
- })].every((flag) => flag);
91
- const $vo1 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.filename || $report(_exceptionable2, {
92
- path: _path2 + ".filename",
93
- expected: "string",
94
- value: input3.filename
95
- }), void 0 === input3.overlays || (Array.isArray(input3.overlays) || $report(_exceptionable2, {
96
- path: _path2 + ".overlays",
97
- expected: "(Array<string> | undefined)",
98
- value: input3.overlays
99
- })) && input3.overlays.map((elem, _index2) => "string" === typeof elem || $report(_exceptionable2, {
100
- path: _path2 + ".overlays[" + _index2 + "]",
101
- expected: "string",
102
- value: elem
103
- })).every((flag) => flag) || $report(_exceptionable2, {
104
- path: _path2 + ".overlays",
105
- expected: "(Array<string> | undefined)",
106
- value: input3.overlays
107
- }), void 0 === input3.zoomInPoints || (Array.isArray(input3.zoomInPoints) || $report(_exceptionable2, {
108
- path: _path2 + ".zoomInPoints",
109
- expected: "(Array<[number, number]> | undefined)",
110
- value: input3.zoomInPoints
111
- })) && input3.zoomInPoints.map((elem, _index3) => (Array.isArray(elem) || $report(_exceptionable2, {
112
- path: _path2 + ".zoomInPoints[" + _index3 + "]",
113
- expected: "[number, number]",
114
- value: elem
115
- })) && ((elem.length === 2 || $report(_exceptionable2, {
116
- path: _path2 + ".zoomInPoints[" + _index3 + "]",
117
- expected: "[number, number]",
118
- value: elem
119
- })) && [
120
- "number" === typeof elem[0] || $report(_exceptionable2, {
121
- path: _path2 + ".zoomInPoints[" + _index3 + "][0]",
122
- expected: "number",
123
- value: elem[0]
124
- }),
125
- "number" === typeof elem[1] || $report(_exceptionable2, {
126
- path: _path2 + ".zoomInPoints[" + _index3 + "][1]",
127
- expected: "number",
128
- value: elem[1]
129
- })
130
- ].every((flag) => flag)) || $report(_exceptionable2, {
131
- path: _path2 + ".zoomInPoints[" + _index3 + "]",
132
- expected: "[number, number]",
133
- value: elem
134
- })).every((flag) => flag) || $report(_exceptionable2, {
135
- path: _path2 + ".zoomInPoints",
136
- expected: "(Array<[number, number]> | undefined)",
137
- value: input3.zoomInPoints
138
- }), "string" === typeof input3.metadata || $report(_exceptionable2, {
139
- path: _path2 + ".metadata",
140
- expected: "string",
141
- value: input3.metadata
142
- })].every((flag) => flag);
143
- return ("object" === typeof input2 && null !== input2 || $report(true, {
144
- path: _path + "",
145
- expected: "SampleWSImagesResponse",
146
- value: input2
147
- })) && $vo0(input2, _path + "", true) || $report(true, {
148
- path: _path + "",
149
- expected: "SampleWSImagesResponse",
150
- value: input2
151
- });
152
- })(input, "$input", true);
153
- }
154
- const success = 0 === errors.length;
155
- return {
156
- success,
157
- errors,
158
- data: success ? input : void 0
159
- };
160
- };
161
-
162
- export {
163
- sampleWSImagesPayload,
164
- validSampleWSImagesRequest,
165
- validSampleWSImagesResponse
166
- };