@sjcrh/proteinpaint-types 2.129.0 → 2.129.2

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Files changed (6) hide show
  1. package/dist/chunk-UWNYHMCA.js +493 -0
  2. package/dist/gdc.grin2.js +1 -1
  3. package/dist/index.js +1 -1
  4. package/package.json +1 -1
  5. package/src/routes/gdc.grin2.ts +58 -2
  6. package/dist/chunk-DJ5QE625.js +0 -294
package/dist/chunk-UWNYHMCA.js ADDED
@@ -0,0 +1,493 @@
1
+ import {
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+ __toESM,
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+ require_lib
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+ } from "./chunk-CNSSF43V.js";
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+
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+ // dist/gdc.grin2.ts
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+ var import_typia = __toESM(require_lib(), 1);
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+
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+ // src/routes/gdc.grin2.ts
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+ var gdcGRIN2listPayload = {
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+ request: {
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+ typeId: "GdcGRIN2listRequest"
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+ },
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+ response: {
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+ typeId: "GdcGRIN2listResponse"
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+ }
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+ };
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+ var runGRIN2Payload = {
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+ request: {
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+ typeId: "RunGRIN2Request"
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+ },
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+ response: {
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+ typeId: "RunGRIN2Response"
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+ }
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+ };
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+
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+ // dist/gdc.grin2.ts
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+ var validGdcGRIN2listRequest = (input) => {
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+ const errors = [];
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+ const __is = (input2) => {
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+ const $io0 = (input3) => (void 0 === input3.mafOptions || "object" === typeof input3.mafOptions && null !== input3.mafOptions && $io1(input3.mafOptions)) && true && true;
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+ const $io1 = (input3) => "WXS" === input3.experimentalStrategy;
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+ return "object" === typeof input2 && null !== input2 && false === Array.isArray(input2) && $io0(input2);
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+ };
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+ if (false === __is(input)) {
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+ const $report = import_typia.createValidate.report(errors);
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+ ((input2, _path, _exceptionable = true) => {
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+ const $vo0 = (input3, _path2, _exceptionable2 = true) => [true, void 0 === input3.mafOptions || ("object" === typeof input3.mafOptions && null !== input3.mafOptions || $report(_exceptionable2, {
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+ path: _path2 + ".mafOptions",
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+ expected: "(__type | undefined)",
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+ value: input3.mafOptions
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+ })) && $vo1(input3.mafOptions, _path2 + ".mafOptions", _exceptionable2) || $report(_exceptionable2, {
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+ path: _path2 + ".mafOptions",
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+ expected: "(__type | undefined)",
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+ value: input3.mafOptions
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+ }), true, true].every((flag) => flag);
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+ const $vo1 = (input3, _path2, _exceptionable2 = true) => ["WXS" === input3.experimentalStrategy || $report(_exceptionable2, {
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+ path: _path2 + ".experimentalStrategy",
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+ expected: '"WXS"',
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+ value: input3.experimentalStrategy
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+ })].every((flag) => flag);
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+ return ("object" === typeof input2 && null !== input2 && false === Array.isArray(input2) || $report(true, {
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+ path: _path + "",
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+ expected: "GdcGRIN2listRequest",
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+ value: input2
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+ })) && $vo0(input2, _path + "", true) || $report(true, {
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+ path: _path + "",
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+ expected: "GdcGRIN2listRequest",
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+ value: input2
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+ });
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+ })(input, "$input", true);
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+ }
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+ const success = 0 === errors.length;
64
+ return {
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+ success,
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+ errors,
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+ data: success ? input : void 0
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+ };
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+ };
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+ var validGdcGRIN2listResponse = (input) => {
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+ const errors = [];
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+ const __is = (input2) => {
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+ const $io0 = (input3) => Array.isArray(input3.files) && input3.files.every((elem) => "object" === typeof elem && null !== elem && $io1(elem)) && "number" === typeof input3.filesTotal && "number" === typeof input3.maxTotalSizeCompressed && (void 0 === input3.fileCounts || "object" === typeof input3.fileCounts && null !== input3.fileCounts && $io2(input3.fileCounts)) && (void 0 === input3.appliedFilters || "object" === typeof input3.appliedFilters && null !== input3.appliedFilters && false === Array.isArray(input3.appliedFilters) && $io3(input3.appliedFilters)) && (void 0 === input3.deduplicationStats || "object" === typeof input3.deduplicationStats && null !== input3.deduplicationStats && $io4(input3.deduplicationStats));
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+ const $io1 = (input3) => "string" === typeof input3.id && "string" === typeof input3.case_submitter_id && "string" === typeof input3.case_uuid && "number" === typeof input3.file_size && (Array.isArray(input3.sample_types) && input3.sample_types.every((elem) => "string" === typeof elem)) && "string" === typeof input3.project_id && (void 0 === input3.file_format || "MAF" === input3.file_format);
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+ const $io2 = (input3) => "number" === typeof input3.maf;
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+ const $io3 = (input3) => void 0 === input3.experimentalStrategy || "WXS" === input3.experimentalStrategy;
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+ const $io4 = (input3) => "number" === typeof input3.originalFileCount && "number" === typeof input3.deduplicatedFileCount && "number" === typeof input3.duplicatesRemoved && (void 0 === input3.caseDetails || Array.isArray(input3.caseDetails) && input3.caseDetails.every((elem) => "object" === typeof elem && null !== elem && $io5(elem))) && (Array.isArray(input3.filteredFiles) && input3.filteredFiles.every((elem) => "object" === typeof elem && null !== elem && $io6(elem)));
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+ const $io5 = (input3) => "string" === typeof input3.caseName && "number" === typeof input3.fileCount && "number" === typeof input3.keptFileSize;
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+ const $io6 = (input3) => "string" === typeof input3.fileId && "number" === typeof input3.fileSize && "string" === typeof input3.reason;
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+ return "object" === typeof input2 && null !== input2 && $io0(input2);
81
+ };
82
+ if (false === __is(input)) {
83
+ const $report = import_typia.createValidate.report(errors);
84
+ ((input2, _path, _exceptionable = true) => {
85
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => [(Array.isArray(input3.files) || $report(_exceptionable2, {
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+ path: _path2 + ".files",
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+ expected: "Array<GdcGRIN2File>",
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+ value: input3.files
89
+ })) && input3.files.map((elem, _index1) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
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+ path: _path2 + ".files[" + _index1 + "]",
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+ expected: "GdcGRIN2File",
92
+ value: elem
93
+ })) && $vo1(elem, _path2 + ".files[" + _index1 + "]", _exceptionable2) || $report(_exceptionable2, {
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+ path: _path2 + ".files[" + _index1 + "]",
95
+ expected: "GdcGRIN2File",
96
+ value: elem
97
+ })).every((flag) => flag) || $report(_exceptionable2, {
98
+ path: _path2 + ".files",
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+ expected: "Array<GdcGRIN2File>",
100
+ value: input3.files
101
+ }), "number" === typeof input3.filesTotal || $report(_exceptionable2, {
102
+ path: _path2 + ".filesTotal",
103
+ expected: "number",
104
+ value: input3.filesTotal
105
+ }), "number" === typeof input3.maxTotalSizeCompressed || $report(_exceptionable2, {
106
+ path: _path2 + ".maxTotalSizeCompressed",
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+ expected: "number",
108
+ value: input3.maxTotalSizeCompressed
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+ }), void 0 === input3.fileCounts || ("object" === typeof input3.fileCounts && null !== input3.fileCounts || $report(_exceptionable2, {
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+ path: _path2 + ".fileCounts",
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+ expected: "(__type | undefined)",
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+ value: input3.fileCounts
113
+ })) && $vo2(input3.fileCounts, _path2 + ".fileCounts", _exceptionable2) || $report(_exceptionable2, {
114
+ path: _path2 + ".fileCounts",
115
+ expected: "(__type | undefined)",
116
+ value: input3.fileCounts
117
+ }), void 0 === input3.appliedFilters || ("object" === typeof input3.appliedFilters && null !== input3.appliedFilters && false === Array.isArray(input3.appliedFilters) || $report(_exceptionable2, {
118
+ path: _path2 + ".appliedFilters",
119
+ expected: "(__type.o1 | undefined)",
120
+ value: input3.appliedFilters
121
+ })) && $vo3(input3.appliedFilters, _path2 + ".appliedFilters", _exceptionable2) || $report(_exceptionable2, {
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+ path: _path2 + ".appliedFilters",
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+ expected: "(__type.o1 | undefined)",
124
+ value: input3.appliedFilters
125
+ }), void 0 === input3.deduplicationStats || ("object" === typeof input3.deduplicationStats && null !== input3.deduplicationStats || $report(_exceptionable2, {
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+ path: _path2 + ".deduplicationStats",
127
+ expected: "(__type.o2 | undefined)",
128
+ value: input3.deduplicationStats
129
+ })) && $vo4(input3.deduplicationStats, _path2 + ".deduplicationStats", _exceptionable2) || $report(_exceptionable2, {
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+ path: _path2 + ".deduplicationStats",
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+ expected: "(__type.o2 | undefined)",
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+ value: input3.deduplicationStats
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+ })].every((flag) => flag);
134
+ const $vo1 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.id || $report(_exceptionable2, {
135
+ path: _path2 + ".id",
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+ expected: "string",
137
+ value: input3.id
138
+ }), "string" === typeof input3.case_submitter_id || $report(_exceptionable2, {
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+ path: _path2 + ".case_submitter_id",
140
+ expected: "string",
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+ value: input3.case_submitter_id
142
+ }), "string" === typeof input3.case_uuid || $report(_exceptionable2, {
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+ path: _path2 + ".case_uuid",
144
+ expected: "string",
145
+ value: input3.case_uuid
146
+ }), "number" === typeof input3.file_size || $report(_exceptionable2, {
147
+ path: _path2 + ".file_size",
148
+ expected: "number",
149
+ value: input3.file_size
150
+ }), (Array.isArray(input3.sample_types) || $report(_exceptionable2, {
151
+ path: _path2 + ".sample_types",
152
+ expected: "Array<string>",
153
+ value: input3.sample_types
154
+ })) && input3.sample_types.map((elem, _index2) => "string" === typeof elem || $report(_exceptionable2, {
155
+ path: _path2 + ".sample_types[" + _index2 + "]",
156
+ expected: "string",
157
+ value: elem
158
+ })).every((flag) => flag) || $report(_exceptionable2, {
159
+ path: _path2 + ".sample_types",
160
+ expected: "Array<string>",
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+ value: input3.sample_types
162
+ }), "string" === typeof input3.project_id || $report(_exceptionable2, {
163
+ path: _path2 + ".project_id",
164
+ expected: "string",
165
+ value: input3.project_id
166
+ }), void 0 === input3.file_format || "MAF" === input3.file_format || $report(_exceptionable2, {
167
+ path: _path2 + ".file_format",
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+ expected: '("MAF" | undefined)',
169
+ value: input3.file_format
170
+ })].every((flag) => flag);
171
+ const $vo2 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.maf || $report(_exceptionable2, {
172
+ path: _path2 + ".maf",
173
+ expected: "number",
174
+ value: input3.maf
175
+ })].every((flag) => flag);
176
+ const $vo3 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.experimentalStrategy || "WXS" === input3.experimentalStrategy || $report(_exceptionable2, {
177
+ path: _path2 + ".experimentalStrategy",
178
+ expected: '("WXS" | undefined)',
179
+ value: input3.experimentalStrategy
180
+ })].every((flag) => flag);
181
+ const $vo4 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.originalFileCount || $report(_exceptionable2, {
182
+ path: _path2 + ".originalFileCount",
183
+ expected: "number",
184
+ value: input3.originalFileCount
185
+ }), "number" === typeof input3.deduplicatedFileCount || $report(_exceptionable2, {
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+ path: _path2 + ".deduplicatedFileCount",
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+ expected: "number",
188
+ value: input3.deduplicatedFileCount
189
+ }), "number" === typeof input3.duplicatesRemoved || $report(_exceptionable2, {
190
+ path: _path2 + ".duplicatesRemoved",
191
+ expected: "number",
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+ value: input3.duplicatesRemoved
193
+ }), void 0 === input3.caseDetails || (Array.isArray(input3.caseDetails) || $report(_exceptionable2, {
194
+ path: _path2 + ".caseDetails",
195
+ expected: "(Array<__type> | undefined)",
196
+ value: input3.caseDetails
197
+ })) && input3.caseDetails.map((elem, _index3) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
198
+ path: _path2 + ".caseDetails[" + _index3 + "]",
199
+ expected: "__type.o3",
200
+ value: elem
201
+ })) && $vo5(elem, _path2 + ".caseDetails[" + _index3 + "]", _exceptionable2) || $report(_exceptionable2, {
202
+ path: _path2 + ".caseDetails[" + _index3 + "]",
203
+ expected: "__type.o3",
204
+ value: elem
205
+ })).every((flag) => flag) || $report(_exceptionable2, {
206
+ path: _path2 + ".caseDetails",
207
+ expected: "(Array<__type> | undefined)",
208
+ value: input3.caseDetails
209
+ }), (Array.isArray(input3.filteredFiles) || $report(_exceptionable2, {
210
+ path: _path2 + ".filteredFiles",
211
+ expected: "Array<__type>.o1",
212
+ value: input3.filteredFiles
213
+ })) && input3.filteredFiles.map((elem, _index4) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
214
+ path: _path2 + ".filteredFiles[" + _index4 + "]",
215
+ expected: "__type.o4",
216
+ value: elem
217
+ })) && $vo6(elem, _path2 + ".filteredFiles[" + _index4 + "]", _exceptionable2) || $report(_exceptionable2, {
218
+ path: _path2 + ".filteredFiles[" + _index4 + "]",
219
+ expected: "__type.o4",
220
+ value: elem
221
+ })).every((flag) => flag) || $report(_exceptionable2, {
222
+ path: _path2 + ".filteredFiles",
223
+ expected: "Array<__type>.o1",
224
+ value: input3.filteredFiles
225
+ })].every((flag) => flag);
226
+ const $vo5 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.caseName || $report(_exceptionable2, {
227
+ path: _path2 + ".caseName",
228
+ expected: "string",
229
+ value: input3.caseName
230
+ }), "number" === typeof input3.fileCount || $report(_exceptionable2, {
231
+ path: _path2 + ".fileCount",
232
+ expected: "number",
233
+ value: input3.fileCount
234
+ }), "number" === typeof input3.keptFileSize || $report(_exceptionable2, {
235
+ path: _path2 + ".keptFileSize",
236
+ expected: "number",
237
+ value: input3.keptFileSize
238
+ })].every((flag) => flag);
239
+ const $vo6 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.fileId || $report(_exceptionable2, {
240
+ path: _path2 + ".fileId",
241
+ expected: "string",
242
+ value: input3.fileId
243
+ }), "number" === typeof input3.fileSize || $report(_exceptionable2, {
244
+ path: _path2 + ".fileSize",
245
+ expected: "number",
246
+ value: input3.fileSize
247
+ }), "string" === typeof input3.reason || $report(_exceptionable2, {
248
+ path: _path2 + ".reason",
249
+ expected: "string",
250
+ value: input3.reason
251
+ })].every((flag) => flag);
252
+ return ("object" === typeof input2 && null !== input2 || $report(true, {
253
+ path: _path + "",
254
+ expected: "GdcGRIN2listResponse",
255
+ value: input2
256
+ })) && $vo0(input2, _path + "", true) || $report(true, {
257
+ path: _path + "",
258
+ expected: "GdcGRIN2listResponse",
259
+ value: input2
260
+ });
261
+ })(input, "$input", true);
262
+ }
263
+ const success = 0 === errors.length;
264
+ return {
265
+ success,
266
+ errors,
267
+ data: success ? input : void 0
268
+ };
269
+ };
270
+ var validRunGRIN2Request = (input) => {
271
+ const errors = [];
272
+ const __is = (input2) => {
273
+ const $join = import_typia.createValidate.join;
274
+ const $io0 = (input3) => "object" === typeof input3.caseFiles && null !== input3.caseFiles && false === Array.isArray(input3.caseFiles) && $io1(input3.caseFiles) && (void 0 === input3.mafOptions || "object" === typeof input3.mafOptions && null !== input3.mafOptions && false === Array.isArray(input3.mafOptions) && $io3(input3.mafOptions));
275
+ const $io1 = (input3) => Object.keys(input3).every((key) => {
276
+ const value = input3[key];
277
+ if (void 0 === value)
278
+ return true;
279
+ if (RegExp(/(.*)/).test(key))
280
+ return "object" === typeof value && null !== value && false === Array.isArray(value) && $io2(value);
281
+ return true;
282
+ });
283
+ const $io2 = (input3) => void 0 === input3.maf || "string" === typeof input3.maf;
284
+ const $io3 = (input3) => (void 0 === input3.minTotalDepth || "number" === typeof input3.minTotalDepth) && (void 0 === input3.minAltAlleleCount || "number" === typeof input3.minAltAlleleCount);
285
+ return "object" === typeof input2 && null !== input2 && $io0(input2);
286
+ };
287
+ if (false === __is(input)) {
288
+ const $report = import_typia.createValidate.report(errors);
289
+ ((input2, _path, _exceptionable = true) => {
290
+ const $join = import_typia.createValidate.join;
291
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => [("object" === typeof input3.caseFiles && null !== input3.caseFiles && false === Array.isArray(input3.caseFiles) || $report(_exceptionable2, {
292
+ path: _path2 + ".caseFiles",
293
+ expected: "__type",
294
+ value: input3.caseFiles
295
+ })) && $vo1(input3.caseFiles, _path2 + ".caseFiles", _exceptionable2) || $report(_exceptionable2, {
296
+ path: _path2 + ".caseFiles",
297
+ expected: "__type",
298
+ value: input3.caseFiles
299
+ }), void 0 === input3.mafOptions || ("object" === typeof input3.mafOptions && null !== input3.mafOptions && false === Array.isArray(input3.mafOptions) || $report(_exceptionable2, {
300
+ path: _path2 + ".mafOptions",
301
+ expected: "(__type.o2 | undefined)",
302
+ value: input3.mafOptions
303
+ })) && $vo3(input3.mafOptions, _path2 + ".mafOptions", _exceptionable2) || $report(_exceptionable2, {
304
+ path: _path2 + ".mafOptions",
305
+ expected: "(__type.o2 | undefined)",
306
+ value: input3.mafOptions
307
+ })].every((flag) => flag);
308
+ const $vo1 = (input3, _path2, _exceptionable2 = true) => [false === _exceptionable2 || Object.keys(input3).map((key) => {
309
+ const value = input3[key];
310
+ if (void 0 === value)
311
+ return true;
312
+ if (RegExp(/(.*)/).test(key))
313
+ return ("object" === typeof value && null !== value && false === Array.isArray(value) || $report(_exceptionable2, {
314
+ path: _path2 + $join(key),
315
+ expected: "__type.o1",
316
+ value
317
+ })) && $vo2(value, _path2 + $join(key), _exceptionable2) || $report(_exceptionable2, {
318
+ path: _path2 + $join(key),
319
+ expected: "__type.o1",
320
+ value
321
+ });
322
+ return true;
323
+ }).every((flag) => flag)].every((flag) => flag);
324
+ const $vo2 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.maf || "string" === typeof input3.maf || $report(_exceptionable2, {
325
+ path: _path2 + ".maf",
326
+ expected: "(string | undefined)",
327
+ value: input3.maf
328
+ })].every((flag) => flag);
329
+ const $vo3 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.minTotalDepth || "number" === typeof input3.minTotalDepth || $report(_exceptionable2, {
330
+ path: _path2 + ".minTotalDepth",
331
+ expected: "(number | undefined)",
332
+ value: input3.minTotalDepth
333
+ }), void 0 === input3.minAltAlleleCount || "number" === typeof input3.minAltAlleleCount || $report(_exceptionable2, {
334
+ path: _path2 + ".minAltAlleleCount",
335
+ expected: "(number | undefined)",
336
+ value: input3.minAltAlleleCount
337
+ })].every((flag) => flag);
338
+ return ("object" === typeof input2 && null !== input2 || $report(true, {
339
+ path: _path + "",
340
+ expected: "RunGRIN2Request",
341
+ value: input2
342
+ })) && $vo0(input2, _path + "", true) || $report(true, {
343
+ path: _path + "",
344
+ expected: "RunGRIN2Request",
345
+ value: input2
346
+ });
347
+ })(input, "$input", true);
348
+ }
349
+ const success = 0 === errors.length;
350
+ return {
351
+ success,
352
+ errors,
353
+ data: success ? input : void 0
354
+ };
355
+ };
356
+ var validRunGRIN2Response = (input) => {
357
+ const errors = [];
358
+ const __is = (input2) => {
359
+ const $io0 = (input3) => ("success" === input3.status || "error" === input3.status) && (void 0 === input3.error || "string" === typeof input3.error) && (void 0 === input3.pngImg || "string" === typeof input3.pngImg) && true && true && (void 0 === input3.rustResult || "object" === typeof input3.rustResult && null !== input3.rustResult && $io1(input3.rustResult));
360
+ const $io1 = (input3) => Array.isArray(input3.successful_data) && input3.successful_data.every((elem) => Array.isArray(elem) && elem.every((elem2) => "string" === typeof elem2)) && (Array.isArray(input3.failed_files) && input3.failed_files.every((elem) => "object" === typeof elem && null !== elem && $io2(elem))) && ("object" === typeof input3.summary && null !== input3.summary && ("number" === typeof input3.summary.total_files && "number" === typeof input3.summary.successful_files && "number" === typeof input3.summary.failed_files));
361
+ const $io2 = (input3) => "string" === typeof input3.case_id && "string" === typeof input3.data_type && "string" === typeof input3.error_type && "string" === typeof input3.error_details && "number" === typeof input3.attempts_made;
362
+ return "object" === typeof input2 && null !== input2 && $io0(input2);
363
+ };
364
+ if (false === __is(input)) {
365
+ const $report = import_typia.createValidate.report(errors);
366
+ ((input2, _path, _exceptionable = true) => {
367
+ const $vo0 = (input3, _path2, _exceptionable2 = true) => ["success" === input3.status || "error" === input3.status || $report(_exceptionable2, {
368
+ path: _path2 + ".status",
369
+ expected: '("error" | "success")',
370
+ value: input3.status
371
+ }), void 0 === input3.error || "string" === typeof input3.error || $report(_exceptionable2, {
372
+ path: _path2 + ".error",
373
+ expected: "(string | undefined)",
374
+ value: input3.error
375
+ }), void 0 === input3.pngImg || "string" === typeof input3.pngImg || $report(_exceptionable2, {
376
+ path: _path2 + ".pngImg",
377
+ expected: "(string | undefined)",
378
+ value: input3.pngImg
379
+ }), true, true, void 0 === input3.rustResult || ("object" === typeof input3.rustResult && null !== input3.rustResult || $report(_exceptionable2, {
380
+ path: _path2 + ".rustResult",
381
+ expected: "(RustGRIN2Result | undefined)",
382
+ value: input3.rustResult
383
+ })) && $vo1(input3.rustResult, _path2 + ".rustResult", _exceptionable2) || $report(_exceptionable2, {
384
+ path: _path2 + ".rustResult",
385
+ expected: "(RustGRIN2Result | undefined)",
386
+ value: input3.rustResult
387
+ })].every((flag) => flag);
388
+ const $vo1 = (input3, _path2, _exceptionable2 = true) => [(Array.isArray(input3.successful_data) || $report(_exceptionable2, {
389
+ path: _path2 + ".successful_data",
390
+ expected: "Array<Array<string>>",
391
+ value: input3.successful_data
392
+ })) && input3.successful_data.map((elem, _index1) => (Array.isArray(elem) || $report(_exceptionable2, {
393
+ path: _path2 + ".successful_data[" + _index1 + "]",
394
+ expected: "Array<string>",
395
+ value: elem
396
+ })) && elem.map((elem2, _index2) => "string" === typeof elem2 || $report(_exceptionable2, {
397
+ path: _path2 + ".successful_data[" + _index1 + "][" + _index2 + "]",
398
+ expected: "string",
399
+ value: elem2
400
+ })).every((flag) => flag) || $report(_exceptionable2, {
401
+ path: _path2 + ".successful_data[" + _index1 + "]",
402
+ expected: "Array<string>",
403
+ value: elem
404
+ })).every((flag) => flag) || $report(_exceptionable2, {
405
+ path: _path2 + ".successful_data",
406
+ expected: "Array<Array<string>>",
407
+ value: input3.successful_data
408
+ }), (Array.isArray(input3.failed_files) || $report(_exceptionable2, {
409
+ path: _path2 + ".failed_files",
410
+ expected: "Array<RustErrorEntry>",
411
+ value: input3.failed_files
412
+ })) && input3.failed_files.map((elem, _index3) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
413
+ path: _path2 + ".failed_files[" + _index3 + "]",
414
+ expected: "RustErrorEntry",
415
+ value: elem
416
+ })) && $vo2(elem, _path2 + ".failed_files[" + _index3 + "]", _exceptionable2) || $report(_exceptionable2, {
417
+ path: _path2 + ".failed_files[" + _index3 + "]",
418
+ expected: "RustErrorEntry",
419
+ value: elem
420
+ })).every((flag) => flag) || $report(_exceptionable2, {
421
+ path: _path2 + ".failed_files",
422
+ expected: "Array<RustErrorEntry>",
423
+ value: input3.failed_files
424
+ }), ("object" === typeof input3.summary && null !== input3.summary || $report(_exceptionable2, {
425
+ path: _path2 + ".summary",
426
+ expected: "RustSummary",
427
+ value: input3.summary
428
+ })) && $vo3(input3.summary, _path2 + ".summary", _exceptionable2) || $report(_exceptionable2, {
429
+ path: _path2 + ".summary",
430
+ expected: "RustSummary",
431
+ value: input3.summary
432
+ })].every((flag) => flag);
433
+ const $vo2 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.case_id || $report(_exceptionable2, {
434
+ path: _path2 + ".case_id",
435
+ expected: "string",
436
+ value: input3.case_id
437
+ }), "string" === typeof input3.data_type || $report(_exceptionable2, {
438
+ path: _path2 + ".data_type",
439
+ expected: "string",
440
+ value: input3.data_type
441
+ }), "string" === typeof input3.error_type || $report(_exceptionable2, {
442
+ path: _path2 + ".error_type",
443
+ expected: "string",
444
+ value: input3.error_type
445
+ }), "string" === typeof input3.error_details || $report(_exceptionable2, {
446
+ path: _path2 + ".error_details",
447
+ expected: "string",
448
+ value: input3.error_details
449
+ }), "number" === typeof input3.attempts_made || $report(_exceptionable2, {
450
+ path: _path2 + ".attempts_made",
451
+ expected: "number",
452
+ value: input3.attempts_made
453
+ })].every((flag) => flag);
454
+ const $vo3 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.total_files || $report(_exceptionable2, {
455
+ path: _path2 + ".total_files",
456
+ expected: "number",
457
+ value: input3.total_files
458
+ }), "number" === typeof input3.successful_files || $report(_exceptionable2, {
459
+ path: _path2 + ".successful_files",
460
+ expected: "number",
461
+ value: input3.successful_files
462
+ }), "number" === typeof input3.failed_files || $report(_exceptionable2, {
463
+ path: _path2 + ".failed_files",
464
+ expected: "number",
465
+ value: input3.failed_files
466
+ })].every((flag) => flag);
467
+ return ("object" === typeof input2 && null !== input2 || $report(true, {
468
+ path: _path + "",
469
+ expected: "RunGRIN2Response",
470
+ value: input2
471
+ })) && $vo0(input2, _path + "", true) || $report(true, {
472
+ path: _path + "",
473
+ expected: "RunGRIN2Response",
474
+ value: input2
475
+ });
476
+ })(input, "$input", true);
477
+ }
478
+ const success = 0 === errors.length;
479
+ return {
480
+ success,
481
+ errors,
482
+ data: success ? input : void 0
483
+ };
484
+ };
485
+
486
+ export {
487
+ gdcGRIN2listPayload,
488
+ runGRIN2Payload,
489
+ validGdcGRIN2listRequest,
490
+ validGdcGRIN2listResponse,
491
+ validRunGRIN2Request,
492
+ validRunGRIN2Response
493
+ };
package/dist/gdc.grin2.js CHANGED
@@ -5,7 +5,7 @@ import {
5
5
  validGdcGRIN2listResponse,
6
6
  validRunGRIN2Request,
7
7
  validRunGRIN2Response
8
- } from "./chunk-DJ5QE625.js";
8
+ } from "./chunk-UWNYHMCA.js";
9
9
  import "./chunk-CNSSF43V.js";
10
10
  export {
11
11
  gdcGRIN2listPayload,
package/dist/index.js CHANGED
@@ -175,7 +175,7 @@ import {
175
175
  validGdcGRIN2listResponse,
176
176
  validRunGRIN2Request,
177
177
  validRunGRIN2Response
178
- } from "./chunk-DJ5QE625.js";
178
+ } from "./chunk-UWNYHMCA.js";
179
179
  import {
180
180
  gdcMafPayload,
181
181
  validGdcMafRequest,
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@sjcrh/proteinpaint-types",
3
- "version": "2.129.0",
3
+ "version": "2.129.2",
4
4
  "type": "module",
5
5
  "description": "Shared type definitions between ProteinPaint server and client code",
6
6
  "main": "src/index.ts",
package/src/routes/gdc.grin2.ts CHANGED
@@ -62,13 +62,67 @@ export type GdcGRIN2listResponse = {
62
62
  appliedFilters?: {
63
63
  experimentalStrategy?: ExperimentalStrategy
64
64
  }
65
+ /** Deduplication stats */
66
+ deduplicationStats?: {
67
+ originalFileCount: number
68
+ deduplicatedFileCount: number
69
+ duplicatesRemoved: number
70
+ caseDetails?: Array<{ caseName: string; fileCount: number; keptFileSize: number }>
71
+ filteredFiles: Array<{ fileId: string; fileSize: number; reason: string }>
72
+ }
65
73
  }
66
74
 
67
75
  /**
68
76
  * Parameters for running GRIN2 analysis
69
77
  */
78
+
70
79
  export type RunGRIN2Request = {
71
- [caseId: string]: { maf?: string }
80
+ /** Case files to analyze - maps case ID to file information */
81
+ caseFiles: {
82
+ [caseId: string]: {
83
+ maf?: string
84
+ }
85
+ }
86
+ /** Options for filtering MAF file content */
87
+ mafOptions?: {
88
+ /** Minimum total depth of returned MAF files */
89
+ minTotalDepth?: number // Default: 10
90
+ /** Minimum alternate allele count of returned MAF files */
91
+ minAltAlleleCount?: number // Default: 2
92
+ }
93
+ /** Options for CNV file retrieval (will be added later)
94
+ cnvOptions?: {
95
+ * lossThreshold?: number // Default: -0.5
96
+ * gainThreshold?: number // Default: 0.5
97
+ * segLength?: number // Default: 2000000
98
+ *}
99
+ */
100
+ }
101
+
102
+ /** Error entry from failed file downloads */
103
+ export type RustErrorEntry = {
104
+ case_id: string
105
+ data_type: string
106
+ error_type: string
107
+ error_details: string
108
+ attempts_made: number
109
+ }
110
+
111
+ /** Summary information from Rust processing */
112
+ export type RustSummary = {
113
+ total_files: number
114
+ successful_files: number
115
+ failed_files: number
116
+ }
117
+
118
+ /** Structured output from Rust GRIN2 processing */
119
+ export type RustGRIN2Result = {
120
+ /** Array of successful file data arrays */
121
+ successful_data: string[][]
122
+ /** Array of failed file information */
123
+ failed_files: RustErrorEntry[]
124
+ /** Summary statistics */
125
+ summary: RustSummary
72
126
  }
73
127
 
74
128
  /**
@@ -84,7 +138,9 @@ export type RunGRIN2Response = {
84
138
  /** Download status */
85
139
  download?: any
86
140
  /** Table of top genes indentified by analysis */
87
- topgenetable?: any
141
+ topGeneTable?: any
142
+ /** Data from Rust for making the failed files div */
143
+ rustResult?: RustGRIN2Result
88
144
  }
89
145
  /**
90
146
  * Route payload definitions for type checking
package/dist/chunk-DJ5QE625.js DELETED
@@ -1,294 +0,0 @@
1
- import {
2
- __toESM,
3
- require_lib
4
- } from "./chunk-CNSSF43V.js";
5
-
6
- // dist/gdc.grin2.ts
7
- var import_typia = __toESM(require_lib(), 1);
8
-
9
- // src/routes/gdc.grin2.ts
10
- var gdcGRIN2listPayload = {
11
- request: {
12
- typeId: "GdcGRIN2listRequest"
13
- },
14
- response: {
15
- typeId: "GdcGRIN2listResponse"
16
- }
17
- };
18
- var runGRIN2Payload = {
19
- request: {
20
- typeId: "RunGRIN2Request"
21
- },
22
- response: {
23
- typeId: "RunGRIN2Response"
24
- }
25
- };
26
-
27
- // dist/gdc.grin2.ts
28
- var validGdcGRIN2listRequest = (input) => {
29
- const errors = [];
30
- const __is = (input2) => {
31
- const $io0 = (input3) => (void 0 === input3.mafOptions || "object" === typeof input3.mafOptions && null !== input3.mafOptions && $io1(input3.mafOptions)) && true && true;
32
- const $io1 = (input3) => "WXS" === input3.experimentalStrategy;
33
- return "object" === typeof input2 && null !== input2 && false === Array.isArray(input2) && $io0(input2);
34
- };
35
- if (false === __is(input)) {
36
- const $report = import_typia.createValidate.report(errors);
37
- ((input2, _path, _exceptionable = true) => {
38
- const $vo0 = (input3, _path2, _exceptionable2 = true) => [true, void 0 === input3.mafOptions || ("object" === typeof input3.mafOptions && null !== input3.mafOptions || $report(_exceptionable2, {
39
- path: _path2 + ".mafOptions",
40
- expected: "(__type | undefined)",
41
- value: input3.mafOptions
42
- })) && $vo1(input3.mafOptions, _path2 + ".mafOptions", _exceptionable2) || $report(_exceptionable2, {
43
- path: _path2 + ".mafOptions",
44
- expected: "(__type | undefined)",
45
- value: input3.mafOptions
46
- }), true, true].every((flag) => flag);
47
- const $vo1 = (input3, _path2, _exceptionable2 = true) => ["WXS" === input3.experimentalStrategy || $report(_exceptionable2, {
48
- path: _path2 + ".experimentalStrategy",
49
- expected: '"WXS"',
50
- value: input3.experimentalStrategy
51
- })].every((flag) => flag);
52
- return ("object" === typeof input2 && null !== input2 && false === Array.isArray(input2) || $report(true, {
53
- path: _path + "",
54
- expected: "GdcGRIN2listRequest",
55
- value: input2
56
- })) && $vo0(input2, _path + "", true) || $report(true, {
57
- path: _path + "",
58
- expected: "GdcGRIN2listRequest",
59
- value: input2
60
- });
61
- })(input, "$input", true);
62
- }
63
- const success = 0 === errors.length;
64
- return {
65
- success,
66
- errors,
67
- data: success ? input : void 0
68
- };
69
- };
70
- var validGdcGRIN2listResponse = (input) => {
71
- const errors = [];
72
- const __is = (input2) => {
73
- const $io0 = (input3) => Array.isArray(input3.files) && input3.files.every((elem) => "object" === typeof elem && null !== elem && $io1(elem)) && "number" === typeof input3.filesTotal && "number" === typeof input3.maxTotalSizeCompressed && (void 0 === input3.fileCounts || "object" === typeof input3.fileCounts && null !== input3.fileCounts && $io2(input3.fileCounts)) && (void 0 === input3.appliedFilters || "object" === typeof input3.appliedFilters && null !== input3.appliedFilters && false === Array.isArray(input3.appliedFilters) && $io3(input3.appliedFilters));
74
- const $io1 = (input3) => "string" === typeof input3.id && "string" === typeof input3.case_submitter_id && "string" === typeof input3.case_uuid && "number" === typeof input3.file_size && (Array.isArray(input3.sample_types) && input3.sample_types.every((elem) => "string" === typeof elem)) && "string" === typeof input3.project_id && (void 0 === input3.file_format || "MAF" === input3.file_format);
75
- const $io2 = (input3) => "number" === typeof input3.maf;
76
- const $io3 = (input3) => void 0 === input3.experimentalStrategy || "WXS" === input3.experimentalStrategy;
77
- return "object" === typeof input2 && null !== input2 && $io0(input2);
78
- };
79
- if (false === __is(input)) {
80
- const $report = import_typia.createValidate.report(errors);
81
- ((input2, _path, _exceptionable = true) => {
82
- const $vo0 = (input3, _path2, _exceptionable2 = true) => [(Array.isArray(input3.files) || $report(_exceptionable2, {
83
- path: _path2 + ".files",
84
- expected: "Array<GdcGRIN2File>",
85
- value: input3.files
86
- })) && input3.files.map((elem, _index1) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
87
- path: _path2 + ".files[" + _index1 + "]",
88
- expected: "GdcGRIN2File",
89
- value: elem
90
- })) && $vo1(elem, _path2 + ".files[" + _index1 + "]", _exceptionable2) || $report(_exceptionable2, {
91
- path: _path2 + ".files[" + _index1 + "]",
92
- expected: "GdcGRIN2File",
93
- value: elem
94
- })).every((flag) => flag) || $report(_exceptionable2, {
95
- path: _path2 + ".files",
96
- expected: "Array<GdcGRIN2File>",
97
- value: input3.files
98
- }), "number" === typeof input3.filesTotal || $report(_exceptionable2, {
99
- path: _path2 + ".filesTotal",
100
- expected: "number",
101
- value: input3.filesTotal
102
- }), "number" === typeof input3.maxTotalSizeCompressed || $report(_exceptionable2, {
103
- path: _path2 + ".maxTotalSizeCompressed",
104
- expected: "number",
105
- value: input3.maxTotalSizeCompressed
106
- }), void 0 === input3.fileCounts || ("object" === typeof input3.fileCounts && null !== input3.fileCounts || $report(_exceptionable2, {
107
- path: _path2 + ".fileCounts",
108
- expected: "(__type | undefined)",
109
- value: input3.fileCounts
110
- })) && $vo2(input3.fileCounts, _path2 + ".fileCounts", _exceptionable2) || $report(_exceptionable2, {
111
- path: _path2 + ".fileCounts",
112
- expected: "(__type | undefined)",
113
- value: input3.fileCounts
114
- }), void 0 === input3.appliedFilters || ("object" === typeof input3.appliedFilters && null !== input3.appliedFilters && false === Array.isArray(input3.appliedFilters) || $report(_exceptionable2, {
115
- path: _path2 + ".appliedFilters",
116
- expected: "(__type.o1 | undefined)",
117
- value: input3.appliedFilters
118
- })) && $vo3(input3.appliedFilters, _path2 + ".appliedFilters", _exceptionable2) || $report(_exceptionable2, {
119
- path: _path2 + ".appliedFilters",
120
- expected: "(__type.o1 | undefined)",
121
- value: input3.appliedFilters
122
- })].every((flag) => flag);
123
- const $vo1 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.id || $report(_exceptionable2, {
124
- path: _path2 + ".id",
125
- expected: "string",
126
- value: input3.id
127
- }), "string" === typeof input3.case_submitter_id || $report(_exceptionable2, {
128
- path: _path2 + ".case_submitter_id",
129
- expected: "string",
130
- value: input3.case_submitter_id
131
- }), "string" === typeof input3.case_uuid || $report(_exceptionable2, {
132
- path: _path2 + ".case_uuid",
133
- expected: "string",
134
- value: input3.case_uuid
135
- }), "number" === typeof input3.file_size || $report(_exceptionable2, {
136
- path: _path2 + ".file_size",
137
- expected: "number",
138
- value: input3.file_size
139
- }), (Array.isArray(input3.sample_types) || $report(_exceptionable2, {
140
- path: _path2 + ".sample_types",
141
- expected: "Array<string>",
142
- value: input3.sample_types
143
- })) && input3.sample_types.map((elem, _index2) => "string" === typeof elem || $report(_exceptionable2, {
144
- path: _path2 + ".sample_types[" + _index2 + "]",
145
- expected: "string",
146
- value: elem
147
- })).every((flag) => flag) || $report(_exceptionable2, {
148
- path: _path2 + ".sample_types",
149
- expected: "Array<string>",
150
- value: input3.sample_types
151
- }), "string" === typeof input3.project_id || $report(_exceptionable2, {
152
- path: _path2 + ".project_id",
153
- expected: "string",
154
- value: input3.project_id
155
- }), void 0 === input3.file_format || "MAF" === input3.file_format || $report(_exceptionable2, {
156
- path: _path2 + ".file_format",
157
- expected: '("MAF" | undefined)',
158
- value: input3.file_format
159
- })].every((flag) => flag);
160
- const $vo2 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.maf || $report(_exceptionable2, {
161
- path: _path2 + ".maf",
162
- expected: "number",
163
- value: input3.maf
164
- })].every((flag) => flag);
165
- const $vo3 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.experimentalStrategy || "WXS" === input3.experimentalStrategy || $report(_exceptionable2, {
166
- path: _path2 + ".experimentalStrategy",
167
- expected: '("WXS" | undefined)',
168
- value: input3.experimentalStrategy
169
- })].every((flag) => flag);
170
- return ("object" === typeof input2 && null !== input2 || $report(true, {
171
- path: _path + "",
172
- expected: "GdcGRIN2listResponse",
173
- value: input2
174
- })) && $vo0(input2, _path + "", true) || $report(true, {
175
- path: _path + "",
176
- expected: "GdcGRIN2listResponse",
177
- value: input2
178
- });
179
- })(input, "$input", true);
180
- }
181
- const success = 0 === errors.length;
182
- return {
183
- success,
184
- errors,
185
- data: success ? input : void 0
186
- };
187
- };
188
- var validRunGRIN2Request = (input) => {
189
- const errors = [];
190
- const __is = (input2) => {
191
- const $join = import_typia.createValidate.join;
192
- const $io0 = (input3) => Object.keys(input3).every((key) => {
193
- const value = input3[key];
194
- if (void 0 === value)
195
- return true;
196
- if (RegExp(/(.*)/).test(key))
197
- return "object" === typeof value && null !== value && false === Array.isArray(value) && $io1(value);
198
- return true;
199
- });
200
- const $io1 = (input3) => void 0 === input3.maf || "string" === typeof input3.maf;
201
- return "object" === typeof input2 && null !== input2 && false === Array.isArray(input2) && $io0(input2);
202
- };
203
- if (false === __is(input)) {
204
- const $report = import_typia.createValidate.report(errors);
205
- ((input2, _path, _exceptionable = true) => {
206
- const $join = import_typia.createValidate.join;
207
- const $vo0 = (input3, _path2, _exceptionable2 = true) => [false === _exceptionable2 || Object.keys(input3).map((key) => {
208
- const value = input3[key];
209
- if (void 0 === value)
210
- return true;
211
- if (RegExp(/(.*)/).test(key))
212
- return ("object" === typeof value && null !== value && false === Array.isArray(value) || $report(_exceptionable2, {
213
- path: _path2 + $join(key),
214
- expected: "__type",
215
- value
216
- })) && $vo1(value, _path2 + $join(key), _exceptionable2) || $report(_exceptionable2, {
217
- path: _path2 + $join(key),
218
- expected: "__type",
219
- value
220
- });
221
- return true;
222
- }).every((flag) => flag)].every((flag) => flag);
223
- const $vo1 = (input3, _path2, _exceptionable2 = true) => [void 0 === input3.maf || "string" === typeof input3.maf || $report(_exceptionable2, {
224
- path: _path2 + ".maf",
225
- expected: "(string | undefined)",
226
- value: input3.maf
227
- })].every((flag) => flag);
228
- return ("object" === typeof input2 && null !== input2 && false === Array.isArray(input2) || $report(true, {
229
- path: _path + "",
230
- expected: "RunGRIN2Request",
231
- value: input2
232
- })) && $vo0(input2, _path + "", true) || $report(true, {
233
- path: _path + "",
234
- expected: "RunGRIN2Request",
235
- value: input2
236
- });
237
- })(input, "$input", true);
238
- }
239
- const success = 0 === errors.length;
240
- return {
241
- success,
242
- errors,
243
- data: success ? input : void 0
244
- };
245
- };
246
- var validRunGRIN2Response = (input) => {
247
- const errors = [];
248
- const __is = (input2) => {
249
- const $io0 = (input3) => ("success" === input3.status || "error" === input3.status) && (void 0 === input3.error || "string" === typeof input3.error) && (void 0 === input3.pngImg || "string" === typeof input3.pngImg) && true && true;
250
- return "object" === typeof input2 && null !== input2 && $io0(input2);
251
- };
252
- if (false === __is(input)) {
253
- const $report = import_typia.createValidate.report(errors);
254
- ((input2, _path, _exceptionable = true) => {
255
- const $vo0 = (input3, _path2, _exceptionable2 = true) => ["success" === input3.status || "error" === input3.status || $report(_exceptionable2, {
256
- path: _path2 + ".status",
257
- expected: '("error" | "success")',
258
- value: input3.status
259
- }), void 0 === input3.error || "string" === typeof input3.error || $report(_exceptionable2, {
260
- path: _path2 + ".error",
261
- expected: "(string | undefined)",
262
- value: input3.error
263
- }), void 0 === input3.pngImg || "string" === typeof input3.pngImg || $report(_exceptionable2, {
264
- path: _path2 + ".pngImg",
265
- expected: "(string | undefined)",
266
- value: input3.pngImg
267
- }), true, true].every((flag) => flag);
268
- return ("object" === typeof input2 && null !== input2 || $report(true, {
269
- path: _path + "",
270
- expected: "RunGRIN2Response",
271
- value: input2
272
- })) && $vo0(input2, _path + "", true) || $report(true, {
273
- path: _path + "",
274
- expected: "RunGRIN2Response",
275
- value: input2
276
- });
277
- })(input, "$input", true);
278
- }
279
- const success = 0 === errors.length;
280
- return {
281
- success,
282
- errors,
283
- data: success ? input : void 0
284
- };
285
- };
286
-
287
- export {
288
- gdcGRIN2listPayload,
289
- runGRIN2Payload,
290
- validGdcGRIN2listRequest,
291
- validGdcGRIN2listResponse,
292
- validRunGRIN2Request,
293
- validRunGRIN2Response
294
- };