@sjcrh/proteinpaint-types 2.119.0-0 → 2.121.0

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Files changed (48) hide show
  1. package/dist/brainImaging.js +1 -1
  2. package/dist/{chunk-T2CSA2MC.js → chunk-3ZT4UCFM.js} +366 -512
  3. package/dist/{chunk-4V46EBDF.js → chunk-5XRJ5ATE.js} +916 -1264
  4. package/dist/{chunk-BM3JLR6T.js → chunk-AGSW7G4T.js} +905 -1253
  5. package/dist/{chunk-J6SJ4M3S.js → chunk-F64WJMRL.js} +1094 -1306
  6. package/dist/{chunk-YURGGHZI.js → chunk-K7P6C6KU.js} +731 -1079
  7. package/dist/{chunk-GI4NNB34.js → chunk-LBGUOJR3.js} +366 -512
  8. package/dist/{chunk-OL4OMJSP.js → chunk-NCFUZ5VV.js} +903 -1139
  9. package/dist/{chunk-GD3KAF6V.js → chunk-QMWUUGEK.js} +457 -603
  10. package/dist/{chunk-DL4UYYVE.js → chunk-RX5EB2HL.js} +366 -512
  11. package/dist/{chunk-ROPNHRVV.js → chunk-SQBZAOWB.js} +366 -512
  12. package/dist/{chunk-7NNYHDAK.js → chunk-XPOHYEAY.js} +917 -1265
  13. package/dist/{chunk-UVOO2LBD.js → chunk-ZMOSABYP.js} +916 -1264
  14. package/dist/correlationVolcano.js +1 -1
  15. package/dist/index.js +12 -12
  16. package/dist/termdb.boxplot.js +1 -1
  17. package/dist/termdb.categories.js +1 -1
  18. package/dist/termdb.cluster.js +1 -1
  19. package/dist/termdb.descrstats.js +1 -1
  20. package/dist/termdb.numericcategories.js +1 -1
  21. package/dist/termdb.percentile.js +1 -1
  22. package/dist/termdb.termsbyids.js +1 -1
  23. package/dist/termdb.topTermsByType.js +1 -1
  24. package/dist/termdb.topVariablyExpressedGenes.js +1 -1
  25. package/dist/termdb.violin.js +1 -1
  26. package/package.json +1 -1
  27. package/src/filter.ts +12 -67
  28. package/src/genome.ts +1 -1
  29. package/src/routes/hicgenome.ts +1 -1
  30. package/src/routes/isoformlst.ts +1 -1
  31. package/src/routes/termdb.cohorts.ts +1 -1
  32. package/src/routes/termdb.singlecellData.ts +1 -1
  33. package/src/terms/categorical.ts +3 -3
  34. package/src/terms/condition.ts +2 -2
  35. package/src/terms/geneExpression.ts +3 -3
  36. package/src/terms/geneVariant.ts +58 -19
  37. package/src/terms/metaboliteIntensity.ts +4 -4
  38. package/src/terms/q.ts +1 -1
  39. package/src/terms/samplelst.ts +3 -3
  40. package/src/terms/singleCellCellType.ts +2 -2
  41. package/src/terms/singleCellGeneExpression.ts +4 -5
  42. package/src/terms/snp.ts +3 -3
  43. package/src/terms/snps.ts +4 -4
  44. package/src/terms/term.ts +14 -8
  45. package/src/terms/tw.ts +7 -8
  46. package/src/terms/updated-types.ts +5 -4
  47. package/src/termsetting.ts +4 -4
  48. package/src/test/numeric.type.spec.ts +2 -2
package/src/terms/updated-types.ts CHANGED
@@ -1,9 +1,10 @@
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  // temporary code file to hold updated type definitions
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  // as part of the tw router/handler refactor
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- import { CatTWTypes, CategoricalQ } from './categorical.ts'
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- import { NumTWTypes, NumericQ } from './numeric.ts'
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+ import type { CatTWTypes, CategoricalQ } from './categorical.ts'
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+ import type { NumTWTypes, NumericQ } from './numeric.ts'
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+ import type { GvTW, GvQ } from './geneVariant.ts'
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- export type TermWrapper = CatTWTypes | NumTWTypes
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+ export type TermWrapper = CatTWTypes | NumTWTypes | GvTW
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- export type Q = CategoricalQ | NumericQ // | other q
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+ export type Q = CategoricalQ | NumericQ | GvQ // | other q
package/src/termsetting.ts CHANGED
@@ -1,8 +1,8 @@
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  // TODO: will deprecate this code, should use client/termsetting/types.ts instead
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- import { VocabApi } from './vocab.ts'
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- import { TermWrapper, Q } from './terms/tw.ts'
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- import { Term } from './terms/term.ts'
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- import { Filter } from './filter.ts'
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+ import type { VocabApi } from './vocab.ts'
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+ import type { TermWrapper, Q } from './terms/tw.ts'
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+ import type { Term } from './terms/term.ts'
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+ import type { Filter } from './filter.ts'
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  /*
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package/src/test/numeric.type.spec.ts CHANGED
@@ -1,7 +1,7 @@
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- import { StartUnboundedBin, StopUnboundedBin, FullyBoundedBin, NumericTerm } from '../terms/numeric'
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+ import type { StartUnboundedBin, StopUnboundedBin, FullyBoundedBin, NumericTerm } from '../terms/numeric'
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  /*
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- Non-asserted type definition tests
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+ Non-asserted type definition tests: NOT FOR CI, for training only
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  For training only
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  - these tests are not meant to be written for all declared types