@sjcrh/proteinpaint-types 2.118.1-1 → 2.118.3-0

package/dist/{chunk-GRI3224V.js → chunk-LPBYQJG4.js}

@@ -69,7 +69,7 @@ var validTermdbSingleCellSamplesResponse = (input) => {
         return true;
       return true;
     });
-    const $io3 = (input3) => "string" === typeof input3.experimentID;
+    const $io3 = (input3) => void 0 === input3.experimentID || "string" === typeof input3.experimentID;
     const $iu0 = (input3) => (() => {
       if (void 0 !== input3.status)
         return $io0(input3);
@@ -94,19 +94,19 @@ var validTermdbSingleCellSamplesResponse = (input) => {
       })].every((flag) => flag);
       const $vo1 = (input3, _path2, _exceptionable2 = true) => [(Array.isArray(input3.samples) || $report(_exceptionable2, {
         path: _path2 + ".samples",
-        expected: "Array<Sample>",
+        expected: "Array<SingleCellSample>",
         value: input3.samples
       })) && input3.samples.map((elem, _index1) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
         path: _path2 + ".samples[" + _index1 + "]",
-        expected: "Sample",
+        expected: "SingleCellSample",
         value: elem
       })) && $vo2(elem, _path2 + ".samples[" + _index1 + "]", _exceptionable2) || $report(_exceptionable2, {
         path: _path2 + ".samples[" + _index1 + "]",
-        expected: "Sample",
+        expected: "SingleCellSample",
         value: elem
       })).every((flag) => flag) || $report(_exceptionable2, {
         path: _path2 + ".samples",
-        expected: "Array<Sample>",
+        expected: "Array<SingleCellSample>",
         value: input3.samples
       }), (Array.isArray(input3.fields) || $report(_exceptionable2, {
         path: _path2 + ".fields",
@@ -167,9 +167,9 @@ var validTermdbSingleCellSamplesResponse = (input) => {
           return true;
         return true;
       }).every((flag) => flag)].every((flag) => flag);
-      const $vo3 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.experimentID || $report(_exceptionable2, {
+      const $vo3 = (input3, _path2, _exceptionable2 = true) => [true, void 0 === input3.experimentID || "string" === typeof input3.experimentID || $report(_exceptionable2, {
         path: _path2 + ".experimentID",
-        expected: "string",
+        expected: "(string | undefined)",
         value: input3.experimentID
       })].every((flag) => flag);
       const $vu0 = (input3, _path2, _exceptionable2 = true) => (() => {

package/dist/index.js

@@ -72,7 +72,7 @@ import {
   termdbSingleCellSamplesPayload,
   validTermdbSingleCellSamplesRequest,
   validTermdbSingleCellSamplesResponse
-} from "./chunk-GRI3224V.js";
+} from "./chunk-LPBYQJG4.js";
 import {
   termChildrenPayload,
   validTermChildrenRequest,

package/dist/termdb.singlecellSamples.js

@@ -2,7 +2,7 @@ import {
   termdbSingleCellSamplesPayload,
   validTermdbSingleCellSamplesRequest,
   validTermdbSingleCellSamplesResponse
-} from "./chunk-GRI3224V.js";
+} from "./chunk-LPBYQJG4.js";
 import "./chunk-CNSSF43V.js";
 export {
   termdbSingleCellSamplesPayload,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-types",
-  "version": "2.118.1-1",
+  "version": "2.118.3-0",
   "type": "module",
   "description": "Shared type definitions between ProteinPaint server and client code",
   "main": "src/index.ts",

package/src/dataset.ts

@@ -587,11 +587,11 @@ type Probe2Cnv = {
 */
 
 type RnaseqGeneCount = {
-	/** Name of the HDF5 or text file */
+	/** Name of the HDF5 file */
 	file: string
 	samplesFile?: string
-	/** Storage_type for storing data (HDF5 or text). Will deprecate text files in the future */
-	storage_type: 'text' | 'HDF5'
+	/** Storage_type for storing data (HDF5) */
+	storage_type: 'HDF5'
 }
 
 /** the metabolite query */
@@ -623,8 +623,6 @@ export type GeneExpressionQueryNative = {
 	samples?: number[]
 	/** dynamically added flag during launch */
 	nochr?: boolean
-	/** if true, the file is in HDF5 format */
-	hdf5File?: boolean
 	/** dynamically added getter */
 	get?: (param: any) => void
 	/** This dictionary is used to store/cache the default bins calculated for a geneExpression term when initialized in the fillTermWrapper */
@@ -635,7 +633,7 @@ export type GeneExpressionQuery = GeneExpressionQueryGdc | GeneExpressionQueryNa
 
 export type SingleCellGeneExpressionNative = {
 	src: 'native'
-	/** path to HDF5 files. for now only hdf5 is supported.
+	/** path to HDF5 files. for now only HDF5 is supported.
 	each is a gene-by-cell matrix for a sample, with ".h5" suffix. missing files are detected and handled */
 	folder: string
 	/** dynamically added getter */

package/src/routes/termdb.singlecellSamples.ts

@@ -1,7 +1,7 @@
 import type { RoutePayload } from './routeApi.js'
 import type { ErrorResponse } from './errorResponse.ts'
 
-export type Sample = {
+export type SingleCellSample = {
 	/** Sample name, required */
 	sample: string
 	/** optional list of sc data files available for this sample, gdc-specific
@@ -13,7 +13,10 @@ export type Sample = {
 	if no exp, then each sample will just have one experiment identifiable by its sample name, and this name is used in request
 	*/
 	[key: string]: any //sample column/term value
-	experiments?: { experimentID: string }[]
+	experiments?: {
+		sampleName: any
+		experimentID?: string
+	}[]
 
 	// a sample may have additional fields that will be displayed in table, see singleCell.samples.sampleColumns[]
 }
@@ -27,7 +30,7 @@ export type TermdbSingleCellSamplesRequest = {
 }
 type ValidResponse = {
 	/** List of sample names with singlecell data */
-	samples: Sample[]
+	samples: SingleCellSample[]
 	fields: string[]
 	columnNames: string[]
 	sameLegend?: boolean