@sjcrh/proteinpaint-types 2.113.0 → 2.115.0

package/dist/{chunk-ZFUF4XMD.js → chunk-ZPN2DV5E.js}

@@ -62,7 +62,7 @@ var validViolinRequest = (input) => {
     const $io0 = (input3) => "number" === typeof input3.axisHeight && (Array.isArray(input3.currentGeneNames) && input3.currentGeneNames.every((elem) => "string" === typeof elem)) && "string" === typeof input3.datasymbol && "number" === typeof input3.devicePixelRatio && true && "string" === typeof input3.dslabel && (void 0 === input3.filter || "object" === typeof input3.filter && null !== input3.filter && $io1(input3.filter)) && true && "string" === typeof input3.genome && "boolean" === typeof input3.isKDE && ("horizontal" === input3.orientation || "vertical" === input3.orientation) && "number" === typeof input3.radius && "number" === typeof input3.rightMargin && true && "number" === typeof input3.strokeWidth && "number" === typeof input3.svgw && "number" === typeof input3.ticks && true && "string" === typeof input3.unit;
     const $io1 = (input3) => "lst" === input3.type && (void 0 === input3["in"] || "boolean" === typeof input3["in"]) && ("and" === input3.join || "or" === input3.join) && (void 0 === input3.tag || "string" === typeof input3.tag) && (Array.isArray(input3.lst) && input3.lst.every((elem) => "object" === typeof elem && null !== elem && $iu0(elem)));
     const $io2 = (input3) => (void 0 === input3.join || "string" === typeof input3.join) && (void 0 === input3.isnot || "boolean" === typeof input3.isnot) && ("object" === typeof input3.term && null !== input3.term && $io3(input3.term)) && (void 0 === input3.groupset_label || "string" === typeof input3.groupset_label) && (Array.isArray(input3.values) && input3.values.every((elem) => "object" === typeof elem && null !== elem && false === Array.isArray(elem) && $io5(elem)));
-    const $io3 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "categorical" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $iu4(input3.groupsetting));
+    const $io3 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "categorical" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && true && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $iu4(input3.groupsetting));
     const $io4 = (input3) => Object.keys(input3).every((key) => {
       const value = input3[key];
       if (void 0 === value)
@@ -75,13 +75,13 @@ var validViolinRequest = (input) => {
     });
     const $io5 = (input3) => (void 0 === input3.key || "string" === typeof input3.key) && (void 0 === input3.uncomputable || "boolean" === typeof input3.uncomputable) && (void 0 === input3.label || "string" === typeof input3.label || "number" === typeof input3.label) && (void 0 === input3.order || "string" === typeof input3.order) && (void 0 === input3.color || "string" === typeof input3.color) && (void 0 === input3.group || "number" === typeof input3.group) && (void 0 === input3.filter || "object" === typeof input3.filter && null !== input3.filter && $io1(input3.filter));
     const $io6 = (input3) => (void 0 === input3.disabled || "boolean" === typeof input3.disabled) && (Array.isArray(input3.lst) && input3.lst.every((elem) => "object" === typeof elem && null !== elem && $io7(elem)));
-    const $io7 = (input3) => "string" === typeof input3.name && (void 0 === input3.is_grade || "boolean" === typeof input3.is_grade) && (void 0 === input3.is_subcondition || "boolean" === typeof input3.is_subcondition) && (Array.isArray(input3.groups) && input3.groups.every((elem) => "object" === typeof elem && null !== elem && $iu1(elem)));
+    const $io7 = (input3) => "string" === typeof input3.name && (void 0 === input3.is_grade || "boolean" === typeof input3.is_grade) && (void 0 === input3.is_subcondition || "boolean" === typeof input3.is_subcondition) && (void 0 === input3.id || "string" === typeof input3.id) && (Array.isArray(input3.groups) && input3.groups.every((elem) => "object" === typeof elem && null !== elem && $iu1(elem)));
     const $io8 = (input3) => "string" === typeof input3.name && "string" === typeof input3.type && (Array.isArray(input3.values) && input3.values.every((elem) => "object" === typeof elem && null !== elem && $io9(elem))) && (void 0 === input3.uncomputable || "boolean" === typeof input3.uncomputable);
     const $io9 = (input3) => ("string" === typeof input3.key || "number" === typeof input3.key) && "string" === typeof input3.label;
-    const $io10 = (input3) => "string" === typeof input3.name && "filter" === input3.type && ("object" === typeof input3.filter && null !== input3.filter && $io1(input3.filter));
+    const $io10 = (input3) => "string" === typeof input3.name && "filter" === input3.type && true && (void 0 === input3.uncomputable || "boolean" === typeof input3.uncomputable);
     const $io11 = (input3) => "boolean" === typeof input3.disabled && (void 0 === input3.lst || Array.isArray(input3.lst) && input3.lst.length === 0);
     const $io12 = (input3) => (void 0 === input3.join || "string" === typeof input3.join) && (void 0 === input3.isnot || "boolean" === typeof input3.isnot) && ("object" === typeof input3.term && null !== input3.term && $io13(input3.term)) && (Array.isArray(input3.ranges) && input3.ranges.every((elem) => "object" === typeof elem && null !== elem && $iu2(elem))) && (Array.isArray(input3.values) && input3.values.every((elem) => "object" === typeof elem && null !== elem && $io22(elem)));
-    const $io13 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && ("integer" === input3.type || "float" === input3.type || "geneExpression" === input3.type || "metaboliteIntensity" === input3.type) && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && ("object" === typeof input3.bins && null !== input3.bins && $io14(input3.bins)) && (void 0 === input3.unit || "string" === typeof input3.unit) && (void 0 === input3.continuousColorScale || "object" === typeof input3.continuousColorScale && null !== input3.continuousColorScale && $io21(input3.continuousColorScale));
+    const $io13 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && ("integer" === input3.type || "float" === input3.type || "geneExpression" === input3.type || "metaboliteIntensity" === input3.type || "date" === input3.type) && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && true && ("object" === typeof input3.bins && null !== input3.bins && $io14(input3.bins)) && (void 0 === input3.unit || "string" === typeof input3.unit) && (void 0 === input3.continuousColorScale || "object" === typeof input3.continuousColorScale && null !== input3.continuousColorScale && $io21(input3.continuousColorScale));
     const $io14 = (input3) => "object" === typeof input3["default"] && null !== input3["default"] && $iu5(input3["default"]) && ("object" === typeof input3.less && null !== input3.less && $iu5(input3.less)) && (void 0 === input3.label_offset || "number" === typeof input3.label_offset) && (void 0 === input3.label_offset_ignored || "boolean" === typeof input3.label_offset_ignored) && (void 0 === input3.rounding || "string" === typeof input3.rounding) && (void 0 === input3.min || "number" === typeof input3.min) && (void 0 === input3.max || "number" === typeof input3.max);
     const $io15 = (input3) => (void 0 === input3.hiddenValues || "object" === typeof input3.hiddenValues && null !== input3.hiddenValues && false === Array.isArray(input3.hiddenValues) && $io16(input3.hiddenValues)) && (void 0 === input3.isAtomic || true === input3.isAtomic) && (void 0 === input3.name || "string" === typeof input3.name) && (void 0 === input3.reuseId || "string" === typeof input3.reuseId) && "regular-bin" === input3.type && (void 0 === input3.mode || "discrete" === input3.mode) && "number" === typeof input3.bin_size && ("object" === typeof input3.first_bin && null !== input3.first_bin && $iu6(input3.first_bin)) && (void 0 === input3.last_bin || "object" === typeof input3.last_bin && null !== input3.last_bin && $iu7(input3.last_bin)) && (void 0 === input3.label_offset || "number" === typeof input3.label_offset);
     const $io16 = (input3) => Object.keys(input3).every((key) => {
@@ -99,11 +99,11 @@ var validViolinRequest = (input) => {
     const $io21 = (input3) => "string" === typeof input3.minColor && "string" === typeof input3.maxColor;
     const $io22 = (input3) => "string" === typeof input3.key && "number" === typeof input3.value && true === input3.uncomputable && (void 0 === input3.label || "string" === typeof input3.label);
     const $io23 = (input3) => (void 0 === input3.join || "string" === typeof input3.join) && (void 0 === input3.isnot || "boolean" === typeof input3.isnot) && ("object" === typeof input3.term && null !== input3.term && $io24(input3.term)) && (void 0 === input3.value_by_max_grade || "boolean" === typeof input3.value_by_max_grade) && (void 0 === input3.value_by_most_recent || "boolean" === typeof input3.value_by_most_recent) && (void 0 === input3.value_by_computable_grade || "boolean" === typeof input3.value_by_computable_grade) && (void 0 === input3.grade_and_child || Array.isArray(input3.grade_and_child) && input3.grade_and_child.every((elem) => "object" === typeof elem && null !== elem && $io25(elem)));
-    const $io24 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "condition" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values));
+    const $io24 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "condition" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && true;
     const $io25 = (input3) => "number" === typeof input3.grade && "string" === typeof input3.grade_label && (void 0 === input3.child_id || "string" === typeof input3.child_id) && "string" === typeof input3.child_label;
     const $io26 = (input3) => (void 0 === input3.join || "string" === typeof input3.join) && (void 0 === input3.isnot || "boolean" === typeof input3.isnot) && ("object" === typeof input3.term && null !== input3.term && $iu8(input3.term)) && (Array.isArray(input3.values) && input3.values.every((elem) => "object" === typeof elem && null !== elem && $iu3(elem)));
-    const $io27 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io6(input3.groupsetting)) && "gene" === input3.kind && "string" === typeof input3.gene && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
-    const $io28 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io6(input3.groupsetting)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop;
+    const $io27 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && true && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io6(input3.groupsetting)) && "gene" === input3.kind && "string" === typeof input3.gene && (void 0 === input3.chr || "string" === typeof input3.chr) && (void 0 === input3.start || "number" === typeof input3.start) && (void 0 === input3.stop || "number" === typeof input3.stop);
+    const $io28 = (input3) => "string" === typeof input3.id && "string" === typeof input3.name && "geneVariant" === input3.type && (void 0 === input3.child_types || Array.isArray(input3.child_types) && input3.child_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.hashtmldetail || "boolean" === typeof input3.hashtmldetail) && (void 0 === input3.included_types || Array.isArray(input3.included_types) && input3.included_types.every((elem) => "string" === typeof elem)) && (void 0 === input3.isleaf || "boolean" === typeof input3.isleaf) && (void 0 === input3.values || "object" === typeof input3.values && null !== input3.values && false === Array.isArray(input3.values) && $io4(input3.values)) && true && ("object" === typeof input3.groupsetting && null !== input3.groupsetting && $io6(input3.groupsetting)) && "coord" === input3.kind && "string" === typeof input3.chr && "number" === typeof input3.start && "number" === typeof input3.stop;
     const $io29 = (input3) => 1 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "M" === elem || "E" === elem || "F" === elem || "N" === elem || "S" === elem || "D" === elem || "I" === elem || "P" === elem || "L" === elem || "Intron" === elem || "Blank" === elem || "WT" === elem || "ITD" === elem || "DEL" === elem || "NLOSS" === elem || "CLOSS" === elem || "Utr3" === elem || "Utr5" === elem || "X" === elem || "noncoding" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
     const $io30 = (input3) => 4 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "CNV_amp" === elem || "CNV_loss" === elem || "CNV_loh" === elem || "CNV_amplification" === elem || "CNV_homozygous_deletion" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
     const $io31 = (input3) => 5 === input3.dt && (Array.isArray(input3.mclassLst) && input3.mclassLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (Array.isArray(input3.mclassExcludeLst) && input3.mclassExcludeLst.every((elem) => "Blank" === elem || "WT" === elem || "SV" === elem)) && (void 0 === input3.origin || "somatic" === input3.origin || "germline" === input3.origin);
@@ -382,7 +382,7 @@ var validViolinRequest = (input) => {
         path: _path2 + ".values",
         expected: "(TermValues | undefined)",
         value: input3.values
-      }), ("object" === typeof input3.groupsetting && null !== input3.groupsetting || $report(_exceptionable2, {
+      }), true, ("object" === typeof input3.groupsetting && null !== input3.groupsetting || $report(_exceptionable2, {
         path: _path2 + ".groupsetting",
         expected: "(EnabledTermGroupSetting | __type.o1)",
         value: input3.groupsetting
@@ -483,6 +483,10 @@ var validViolinRequest = (input) => {
         path: _path2 + ".is_subcondition",
         expected: "(boolean | undefined)",
         value: input3.is_subcondition
+      }), void 0 === input3.id || "string" === typeof input3.id || $report(_exceptionable2, {
+        path: _path2 + ".id",
+        expected: "(string | undefined)",
+        value: input3.id
       }), (Array.isArray(input3.groups) || $report(_exceptionable2, {
         path: _path2 + ".groups",
         expected: "Array<GroupEntry>",
@@ -546,14 +550,10 @@ var validViolinRequest = (input) => {
         path: _path2 + ".type",
         expected: '"filter"',
         value: input3.type
-      }), ("object" === typeof input3.filter && null !== input3.filter || $report(_exceptionable2, {
-        path: _path2 + ".filter",
-        expected: "Filter",
-        value: input3.filter
-      })) && $vo1(input3.filter, _path2 + ".filter", _exceptionable2) || $report(_exceptionable2, {
-        path: _path2 + ".filter",
-        expected: "Filter",
-        value: input3.filter
+      }), true, void 0 === input3.uncomputable || "boolean" === typeof input3.uncomputable || $report(_exceptionable2, {
+        path: _path2 + ".uncomputable",
+        expected: "(boolean | undefined)",
+        value: input3.uncomputable
       })].every((flag) => flag);
       const $vo11 = (input3, _path2, _exceptionable2 = true) => ["boolean" === typeof input3.disabled || $report(_exceptionable2, {
         path: _path2 + ".disabled",
@@ -629,9 +629,9 @@ var validViolinRequest = (input) => {
         path: _path2 + ".name",
         expected: "string",
         value: input3.name
-      }), "integer" === input3.type || "float" === input3.type || "geneExpression" === input3.type || "metaboliteIntensity" === input3.type || $report(_exceptionable2, {
+      }), "integer" === input3.type || "float" === input3.type || "geneExpression" === input3.type || "metaboliteIntensity" === input3.type || "date" === input3.type || $report(_exceptionable2, {
         path: _path2 + ".type",
-        expected: '("float" | "geneExpression" | "integer" | "metaboliteIntensity")',
+        expected: '("date" | "float" | "geneExpression" | "integer" | "metaboliteIntensity")',
         value: input3.type
       }), void 0 === input3.child_types || (Array.isArray(input3.child_types) || $report(_exceptionable2, {
         path: _path2 + ".child_types",
@@ -673,7 +673,7 @@ var validViolinRequest = (input) => {
         path: _path2 + ".values",
         expected: "(TermValues | undefined)",
         value: input3.values
-      }), ("object" === typeof input3.bins && null !== input3.bins || $report(_exceptionable2, {
+      }), true, ("object" === typeof input3.bins && null !== input3.bins || $report(_exceptionable2, {
         path: _path2 + ".bins",
         expected: "PresetNumericBins",
         value: input3.bins
@@ -1065,7 +1065,7 @@ var validViolinRequest = (input) => {
         path: _path2 + ".values",
         expected: "(TermValues | undefined)",
         value: input3.values
-      })].every((flag) => flag);
+      }), true].every((flag) => flag);
       const $vo25 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.grade || $report(_exceptionable2, {
         path: _path2 + ".grade",
         expected: "number",
@@ -1168,7 +1168,7 @@ var validViolinRequest = (input) => {
         path: _path2 + ".values",
         expected: "(TermValues | undefined)",
         value: input3.values
-      }), ("object" === typeof input3.groupsetting && null !== input3.groupsetting || $report(_exceptionable2, {
+      }), true, ("object" === typeof input3.groupsetting && null !== input3.groupsetting || $report(_exceptionable2, {
         path: _path2 + ".groupsetting",
         expected: "EnabledTermGroupSetting",
         value: input3.groupsetting
@@ -1249,7 +1249,7 @@ var validViolinRequest = (input) => {
         path: _path2 + ".values",
         expected: "(TermValues | undefined)",
         value: input3.values
-      }), ("object" === typeof input3.groupsetting && null !== input3.groupsetting || $report(_exceptionable2, {
+      }), true, ("object" === typeof input3.groupsetting && null !== input3.groupsetting || $report(_exceptionable2, {
         path: _path2 + ".groupsetting",
         expected: "EnabledTermGroupSetting",
         value: input3.groupsetting

package/dist/correlationVolcano.js

@@ -2,7 +2,7 @@ import {
   CorrelationVolcanoPayload,
   validCorrelationVolcanoRequest,
   validCorrelationVolcanoResponse
-} from "./chunk-FMW25T52.js";
+} from "./chunk-MDBZCBM2.js";
 import "./chunk-CNSSF43V.js";
 export {
   CorrelationVolcanoPayload,

package/dist/index.js

@@ -1,28 +1,28 @@
-import {
-  termChildrenPayload,
-  validTermChildrenRequest,
-  validTermChildrenResponse
-} from "./chunk-HKGWC7OO.js";
 import {
   termsByIdsPayload,
   validTermsByIdsRequest,
   validTermsByIdsResponse
-} from "./chunk-TXZQ56TX.js";
+} from "./chunk-I3U2T7HV.js";
+import {
+  topMutatedGenePayload,
+  validTopMutatedGeneRequest,
+  validTopMutatedGeneResponse
+} from "./chunk-IJHMCHUT.js";
 import {
   termdbTopTermsByTypePayload,
   validTermdbTopTermsByTypeRequest,
   validTermdbTopTermsByTypeResponse
-} from "./chunk-4CCAF4O5.js";
+} from "./chunk-KZIZMP7Y.js";
 import {
   termdbTopVariablyExpressedGenesPayload,
   validTermdbTopVariablyExpressedGenesRequest,
   validTermdbTopVariablyExpressedGenesResponse
-} from "./chunk-A72XYNKT.js";
+} from "./chunk-7GSVLBKZ.js";
 import {
   validViolinRequest,
   validViolinResponse,
   violinPayload
-} from "./chunk-ZFUF4XMD.js";
+} from "./chunk-ZPN2DV5E.js";
 import {
   tilePayload,
   validTileRequest,
@@ -34,15 +34,15 @@ import {
   wsImagesPayload
 } from "./chunk-UZH5HOBP.js";
 import {
-  numericCategoriesPayload,
-  validNumericCategoriesRequest,
-  validNumericCategoriesResponse
-} from "./chunk-ES6BRZ4L.js";
+  validWSISamplesRequest,
+  validWSSamplesResponse,
+  wsiSamplesPayload
+} from "./chunk-5HL5BPE5.js";
 import {
   percentilePayload,
   validPercentileRequest,
   validPercentileResponse
-} from "./chunk-GHAIGRB7.js";
+} from "./chunk-EQGBEPDC.js";
 import {
   rootTermPayload,
   validRootTermRequest,
@@ -74,10 +74,10 @@ import {
   validTermdbSingleCellSamplesResponse
 } from "./chunk-GRI3224V.js";
 import {
-  snpPayload,
-  validSnpRequest,
-  validSnpResponse
-} from "./chunk-J4QAF4EU.js";
+  termChildrenPayload,
+  validTermChildrenRequest,
+  validTermChildrenResponse
+} from "./chunk-HKGWC7OO.js";
 import {
   diffExpPayload,
   validDERequest,
@@ -87,17 +87,17 @@ import {
   boxplotPayload,
   validBoxPlotRequest,
   validBoxPlotResponse
-} from "./chunk-2WZPM25H.js";
+} from "./chunk-PTYGGJLG.js";
 import {
   termdbCategoriesPayload,
   validCategoriesRequest,
   validCategoriesResponse
-} from "./chunk-7Z3AE4AY.js";
+} from "./chunk-C7DJDPLP.js";
 import {
   termdbClusterPayload,
   validTermdbClusterRequest,
   validTermdbClusterResponse
-} from "./chunk-OJWYCYKF.js";
+} from "./chunk-NESPJ4GG.js";
 import {
   termdbCohortSummaryPayload,
   validTermdbCohortSummaryRequest,
@@ -112,12 +112,12 @@ import {
   descrStatsPayload,
   validDescrStatsRequest,
   validDescrStatsResponse
-} from "./chunk-KHPBBU43.js";
+} from "./chunk-GS37E7DB.js";
 import {
-  hicGenomePayload,
-  validHicGenomeRequest,
-  validHicGenomeResponse
-} from "./chunk-I2KWGMNM.js";
+  numericCategoriesPayload,
+  validNumericCategoriesRequest,
+  validNumericCategoriesResponse
+} from "./chunk-M26XQDA4.js";
 import {
   hicstatPayload,
   validHicstatRequest,
@@ -148,6 +148,11 @@ import {
   validSampleWSImagesRequest,
   validSampleWSImagesResponse
 } from "./chunk-W4JULXYD.js";
+import {
+  snpPayload,
+  validSnpRequest,
+  validSnpResponse
+} from "./chunk-J4QAF4EU.js";
 import {
   gdcMafPayload,
   validGdcMafRequest,
@@ -158,11 +163,6 @@ import {
   validGdcMafBuildRequest,
   validGdcMafBuildResponse
 } from "./chunk-F5XGJIUS.js";
-import {
-  gdcTopMutatedGenePayload,
-  validGdcTopMutatedGeneRequest,
-  validGdcTopMutatedGeneResponse
-} from "./chunk-Q5F2XI6A.js";
 import {
   geneLookupPayload,
   validGeneLookupRequest,
@@ -188,11 +188,16 @@ import {
   validHicdataRequest,
   validHicdataResponse
 } from "./chunk-VKBTOKI2.js";
+import {
+  hicGenomePayload,
+  validHicGenomeRequest,
+  validHicGenomeResponse
+} from "./chunk-I2KWGMNM.js";
 import {
   brainImagingPayload,
   validBrainImagingRequest,
   validBrainImagingResponse
-} from "./chunk-GGKNEHME.js";
+} from "./chunk-KBTAXZM4.js";
 import {
   brainImagingSamplesPayload,
   validBrainImagingSamplesRequest,
@@ -207,7 +212,7 @@ import {
   CorrelationVolcanoPayload,
   validCorrelationVolcanoRequest,
   validCorrelationVolcanoResponse
-} from "./chunk-FMW25T52.js";
+} from "./chunk-MDBZCBM2.js";
 import {
   datasetPayload,
   validDatasetRequest,
@@ -237,7 +242,6 @@ export {
   dsDataPayload,
   dzImagesPayload,
   gdcMafPayload,
-  gdcTopMutatedGenePayload,
   geneLookupPayload,
   genesetEnrichmentPayload,
   genesetOverrepresentationPayload,
@@ -268,6 +272,7 @@ export {
   termdbTopVariablyExpressedGenesPayload,
   termsByIdsPayload,
   tilePayload,
+  topMutatedGenePayload,
   validBoxPlotRequest,
   validBoxPlotResponse,
   validBrainImagingRequest,
@@ -294,8 +299,6 @@ export {
   validGdcMafBuildResponse,
   validGdcMafRequest,
   validGdcMafResponse,
-  validGdcTopMutatedGeneRequest,
-  validGdcTopMutatedGeneResponse,
   validGeneLookupRequest,
   validGeneLookupResponse,
   validGenesetEnrichmentRequest,
@@ -352,12 +355,17 @@ export {
   validTermsByIdsResponse,
   validTileRequest,
   validTileResponse,
+  validTopMutatedGeneRequest,
+  validTopMutatedGeneResponse,
   validViolinRequest,
   validViolinResponse,
+  validWSISamplesRequest,
   validWSImagesRequest,
   validWSImagesResponse,
+  validWSSamplesResponse,
   validimgRequest,
   validimgResponse,
   violinPayload,
-  wsImagesPayload
+  wsImagesPayload,
+  wsiSamplesPayload
 };

package/dist/termdb.boxplot.js

@@ -2,7 +2,7 @@ import {
   boxplotPayload,
   validBoxPlotRequest,
   validBoxPlotResponse
-} from "./chunk-2WZPM25H.js";
+} from "./chunk-PTYGGJLG.js";
 import "./chunk-CNSSF43V.js";
 export {
   boxplotPayload,

package/dist/termdb.categories.js

@@ -2,7 +2,7 @@ import {
   termdbCategoriesPayload,
   validCategoriesRequest,
   validCategoriesResponse
-} from "./chunk-7Z3AE4AY.js";
+} from "./chunk-C7DJDPLP.js";
 import "./chunk-CNSSF43V.js";
 export {
   termdbCategoriesPayload,

package/dist/termdb.cluster.js

@@ -2,7 +2,7 @@ import {
   termdbClusterPayload,
   validTermdbClusterRequest,
   validTermdbClusterResponse
-} from "./chunk-OJWYCYKF.js";
+} from "./chunk-NESPJ4GG.js";
 import "./chunk-CNSSF43V.js";
 export {
   termdbClusterPayload,

package/dist/termdb.descrstats.js

@@ -2,7 +2,7 @@ import {
   descrStatsPayload,
   validDescrStatsRequest,
   validDescrStatsResponse
-} from "./chunk-KHPBBU43.js";
+} from "./chunk-GS37E7DB.js";
 import "./chunk-CNSSF43V.js";
 export {
   descrStatsPayload,

package/dist/termdb.numericcategories.js

@@ -2,7 +2,7 @@ import {
   numericCategoriesPayload,
   validNumericCategoriesRequest,
   validNumericCategoriesResponse
-} from "./chunk-ES6BRZ4L.js";
+} from "./chunk-M26XQDA4.js";
 import "./chunk-CNSSF43V.js";
 export {
   numericCategoriesPayload,

package/dist/termdb.percentile.js

@@ -2,7 +2,7 @@ import {
   percentilePayload,
   validPercentileRequest,
   validPercentileResponse
-} from "./chunk-GHAIGRB7.js";
+} from "./chunk-EQGBEPDC.js";
 import "./chunk-CNSSF43V.js";
 export {
   percentilePayload,

package/dist/termdb.termsbyids.js

@@ -2,7 +2,7 @@ import {
   termsByIdsPayload,
   validTermsByIdsRequest,
   validTermsByIdsResponse
-} from "./chunk-TXZQ56TX.js";
+} from "./chunk-I3U2T7HV.js";
 import "./chunk-CNSSF43V.js";
 export {
   termsByIdsPayload,

package/dist/termdb.topMutatedGenes.js

@@ -0,0 +1,11 @@
+import {
+  topMutatedGenePayload,
+  validTopMutatedGeneRequest,
+  validTopMutatedGeneResponse
+} from "./chunk-IJHMCHUT.js";
+import "./chunk-CNSSF43V.js";
+export {
+  topMutatedGenePayload,
+  validTopMutatedGeneRequest,
+  validTopMutatedGeneResponse
+};

package/dist/termdb.topTermsByType.js

@@ -2,7 +2,7 @@ import {
   termdbTopTermsByTypePayload,
   validTermdbTopTermsByTypeRequest,
   validTermdbTopTermsByTypeResponse
-} from "./chunk-4CCAF4O5.js";
+} from "./chunk-KZIZMP7Y.js";
 import "./chunk-CNSSF43V.js";
 export {
   termdbTopTermsByTypePayload,

package/dist/termdb.topVariablyExpressedGenes.js

@@ -2,7 +2,7 @@ import {
   termdbTopVariablyExpressedGenesPayload,
   validTermdbTopVariablyExpressedGenesRequest,
   validTermdbTopVariablyExpressedGenesResponse
-} from "./chunk-A72XYNKT.js";
+} from "./chunk-7GSVLBKZ.js";
 import "./chunk-CNSSF43V.js";
 export {
   termdbTopVariablyExpressedGenesPayload,

package/dist/termdb.violin.js

@@ -2,7 +2,7 @@ import {
   validViolinRequest,
   validViolinResponse,
   violinPayload
-} from "./chunk-ZFUF4XMD.js";
+} from "./chunk-ZPN2DV5E.js";
 import "./chunk-CNSSF43V.js";
 export {
   validViolinRequest,

package/dist/wsisamples.js

@@ -0,0 +1,11 @@
+import {
+  validWSISamplesRequest,
+  validWSSamplesResponse,
+  wsiSamplesPayload
+} from "./chunk-5HL5BPE5.js";
+import "./chunk-CNSSF43V.js";
+export {
+  validWSISamplesRequest,
+  validWSSamplesResponse,
+  wsiSamplesPayload
+};

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-types",
-  "version": "2.113.0",
+  "version": "2.115.0",
   "type": "module",
   "description": "Shared type definitions between ProteinPaint server and client code",
   "main": "src/index.ts",

package/src/dataset.ts

@@ -1,4 +1,6 @@
 import type { Mclass } from './Mclass.ts'
+import type { WSImage } from './routes/samplewsimages.ts'
+import type { WSISample } from './routes/wsisamples.ts'
 
 /*** General usage types ***/
 type FileObj = {
@@ -95,8 +97,14 @@ type bcfMafFile = {
 type SnvindelByIsoform = {
 	/** if true, served from gdc. no other parameters */
 	gdcapi?: true
-	/** getter function to retrieve data. dynamically added or ds-supplied */
-	get?: (f: any) => void
+	/** getter function to retrieve data. dynamically added or ds-supplied
+	first argument is required and allow for 2 additional ones
+	*/
+	get?: (f: any, f2?: any, f3?: any) => void
+	/** if true, all tw from one client query must be processed via one call to snvindel.byisoform.get()
+	and no longer processes each tw by calling mayGetGeneVariantData()
+	*/
+	processTwsInOneQuery?: true
 }
 
 type SnvindelByRange = {
@@ -207,7 +215,7 @@ type Filter = {
 
 type VariantFilter = {
 	opts: { joinWith: string[] }
-	filter: Filter
+	filter?: Filter
 	terms: FilterTermEntry[]
 }
 
@@ -455,6 +463,8 @@ type TopVariablyExpressedGenesQuery = {
 }
 
 type TopMutatedGenes = {
+	/** ds supplied getter. if not, dynamically adds one during launch */
+	get?: (f: any) => void
 	/** Specifies the dom element rendered in the menu */
 	arguments?: GeneArgumentEntry[]
 }
@@ -582,6 +592,8 @@ export type GeneExpressionQueryNative = {
 	samples?: number[]
 	/** dynamically added flag during launch */
 	nochr?: boolean
+	/** if true, the file is in HDF5 format */
+	hdf5File?: boolean
 	/** dynamically added getter */
 	get?: (param: any) => void
 	/** This dictionary is used to store/cache the default bins calculated for a geneExpression term when initialized in the fillTermWrapper */
@@ -845,10 +857,16 @@ image file to sample mapping is stored in wsimages table
 export type WSImages = {
 	// type of the image, e.g. H&E
 	type: string
-	// path to the folder where sample images are stored
-	imageBySampleFolder?: string
 
-	sources?: string
+	/* path to the folder where sample images are stored
+	required; for both cases where image files are hosted locally, or loaded from remote via ds-supplied getter
+	*/
+	imageBySampleFolder: string
+
+	/** either ds supplied or dynamically added on launch with built in logic (retrieve the sample list from the wsimages table) */
+	getSamples?: () => Promise<Array<WSISample>>
+	/** either ds supplied or dynamically added on launch with built in logic */
+	getWSImages?: (sampleName: string) => Promise<WSImage[]>
 }
 
 /*** types supporting Termdb ***/
@@ -1218,9 +1236,14 @@ keep this setting here for reason of:
 		ssm?: UrlTemplateSsm | UrlTemplateSsm[]
 	}
 
-	q?: {
+	/** ds-defined or dynamically created */
+	termtypeByCohort?: any
+	/** ds-defined or dynamically created callbacks 
+	{
 		getSupportedChartTypes: (a: any) => any
 	}
+	*/
+	q?: any
 	termMatch2geneSet?: any
 	mclass?: Mclass
 	lollipop?: any
@@ -1357,7 +1380,7 @@ export type Cohort = {
 	/** if present, means correlation volcano plot analysis is enabled */
 	correlationVolcano?: CorrelationVolcano
 	cumburden?: CumBurdenData
-	db: FileObj
+	db?: FileObj
 	/** customize the default chart to open on mass ui when there's no charts. if
 	 * missing it opens dictionary ui */
 	defaultChartType?: string
@@ -1786,7 +1809,7 @@ export type Mds3 = BaseMds & {
 	queries?: Mds3Queries
 	cohort?: Cohort
 	isSupportedChartOverride?: isSupportedChartCallbacks
-	// TODO: termdb should be nested under cohort
+	// TODO FIXME nest termdb under cohort
 	termdb?: Termdb
 	validate_filter0?: (f: any) => void
 	ssm2canonicalisoform?: GdcApi

package/src/index.ts

@@ -17,7 +17,7 @@ export * from './routes/errorResponse.ts'
 export * from './routes/filter.gdc.ts'
 export * from './routes/gdc.maf.ts'
 export * from './routes/gdc.mafBuild.ts'
-export * from './routes/gdc.topMutatedGenes.ts'
+export * from './routes/termdb.topMutatedGenes.ts'
 export * from './routes/genelookup.ts'
 export * from './routes/genesetEnrichment.ts'
 export * from './routes/genesetOverrepresentation.ts'
@@ -54,6 +54,7 @@ export * from './routes/termdb.topVariablyExpressedGenes.ts'
 export * from './routes/termdb.violin.ts'
 export * from './routes/tileserver.ts'
 export * from './routes/wsimages.ts'
+export * from './routes/wsisamples.ts'
 export * from './terms/categorical.ts'
 export * from './terms/condition.ts'
 export * from './terms/numeric.ts'