@sjcrh/proteinpaint-types 2.107.0 → 2.108.0

package/dist/{chunk-FUIYK4TP.js → chunk-2R2EFRAW.js}

@@ -3328,31 +3328,53 @@ var validCorrelationVolcanoRequest = (input) => {
 var validCorrelationVolcanoResponse = (input) => {
   const errors = [];
   const __is = (input2) => {
-    const $io0 = (input3) => Array.isArray(input3.variableItems) && input3.variableItems.every((elem) => "object" === typeof elem && null !== elem && $io1(elem));
-    const $io1 = (input3) => "number" === typeof input3.correlation && "number" === typeof input3.original_pvalue && "number" === typeof input3.adjusted_pvalue && "string" === typeof input3.tw$id && "number" === typeof input3.sampleSize;
+    const $io0 = (input3) => Array.isArray(input3.skippedVariables) && input3.skippedVariables.every((elem) => "object" === typeof elem && null !== elem && $io1(elem)) && (Array.isArray(input3.variableItems) && input3.variableItems.every((elem) => "object" === typeof elem && null !== elem && $io2(elem)));
+    const $io1 = (input3) => "string" === typeof input3.tw$id;
+    const $io2 = (input3) => "number" === typeof input3.correlation && "number" === typeof input3.original_pvalue && "number" === typeof input3.adjusted_pvalue && "string" === typeof input3.tw$id && "number" === typeof input3.sampleSize;
     return "object" === typeof input2 && null !== input2 && $io0(input2);
   };
   if (false === __is(input)) {
     const $report = import_typia.createValidate.report(errors);
     ((input2, _path, _exceptionable = true) => {
-      const $vo0 = (input3, _path2, _exceptionable2 = true) => [(Array.isArray(input3.variableItems) || $report(_exceptionable2, {
-        path: _path2 + ".variableItems",
+      const $vo0 = (input3, _path2, _exceptionable2 = true) => [(Array.isArray(input3.skippedVariables) || $report(_exceptionable2, {
+        path: _path2 + ".skippedVariables",
         expected: "Array<__type>",
-        value: input3.variableItems
-      })) && input3.variableItems.map((elem, _index1) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
-        path: _path2 + ".variableItems[" + _index1 + "]",
+        value: input3.skippedVariables
+      })) && input3.skippedVariables.map((elem, _index1) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
+        path: _path2 + ".skippedVariables[" + _index1 + "]",
         expected: "__type",
         value: elem
-      })) && $vo1(elem, _path2 + ".variableItems[" + _index1 + "]", _exceptionable2) || $report(_exceptionable2, {
-        path: _path2 + ".variableItems[" + _index1 + "]",
+      })) && $vo1(elem, _path2 + ".skippedVariables[" + _index1 + "]", _exceptionable2) || $report(_exceptionable2, {
+        path: _path2 + ".skippedVariables[" + _index1 + "]",
         expected: "__type",
         value: elem
       })).every((flag) => flag) || $report(_exceptionable2, {
-        path: _path2 + ".variableItems",
+        path: _path2 + ".skippedVariables",
         expected: "Array<__type>",
+        value: input3.skippedVariables
+      }), (Array.isArray(input3.variableItems) || $report(_exceptionable2, {
+        path: _path2 + ".variableItems",
+        expected: "Array<__type>.o1",
         value: input3.variableItems
+      })) && input3.variableItems.map((elem, _index2) => ("object" === typeof elem && null !== elem || $report(_exceptionable2, {
+        path: _path2 + ".variableItems[" + _index2 + "]",
+        expected: "__type.o1",
+        value: elem
+      })) && $vo2(elem, _path2 + ".variableItems[" + _index2 + "]", _exceptionable2) || $report(_exceptionable2, {
+        path: _path2 + ".variableItems[" + _index2 + "]",
+        expected: "__type.o1",
+        value: elem
+      })).every((flag) => flag) || $report(_exceptionable2, {
+        path: _path2 + ".variableItems",
+        expected: "Array<__type>.o1",
+        value: input3.variableItems
+      })].every((flag) => flag);
+      const $vo1 = (input3, _path2, _exceptionable2 = true) => ["string" === typeof input3.tw$id || $report(_exceptionable2, {
+        path: _path2 + ".tw$id",
+        expected: "string",
+        value: input3.tw$id
       })].every((flag) => flag);
-      const $vo1 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.correlation || $report(_exceptionable2, {
+      const $vo2 = (input3, _path2, _exceptionable2 = true) => ["number" === typeof input3.correlation || $report(_exceptionable2, {
         path: _path2 + ".correlation",
         expected: "number",
         value: input3.correlation

package/dist/correlationVolcano.js

@@ -2,7 +2,7 @@ import {
   CorrelationVolcanoPayload,
   validCorrelationVolcanoRequest,
   validCorrelationVolcanoResponse
-} from "./chunk-FUIYK4TP.js";
+} from "./chunk-2R2EFRAW.js";
 import "./chunk-Z6B6IQIY.js";
 export {
   CorrelationVolcanoPayload,

package/dist/index.js

@@ -212,7 +212,7 @@ import {
   CorrelationVolcanoPayload,
   validCorrelationVolcanoRequest,
   validCorrelationVolcanoResponse
-} from "./chunk-FUIYK4TP.js";
+} from "./chunk-2R2EFRAW.js";
 import {
   datasetPayload,
   validDatasetRequest,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-types",
-  "version": "2.107.0",
+  "version": "2.108.0",
   "type": "module",
   "description": "Shared type definitions between ProteinPaint server and client code",
   "main": "src/index.ts",

package/src/routes/correlationVolcano.ts

@@ -18,6 +18,11 @@ export type CorrelationVolcanoRequest = {
 }
 
 export type CorrelationVolcanoResponse = {
+	/** Terms with not enough vectors to calculate correlation to be shown in legend */
+	skippedVariables: {
+		/** matching tw $id */
+		tw$id: string
+	}[]
 	/** each element is test result of one variable corresponding to variableTwLst */
 	variableItems: {
 		/** correlation coefficient, -1 to 1 */

package/src/routes/termdb.DE.ts

@@ -38,8 +38,8 @@ export type ExpressionInput = {
 	storage_type: 'HDF5' | 'text'
 	/** Confounding variable for DE analysis. Maybe array of string (Gender: Male/female) or number (Age). For now supporting 1 confounding variable. Later will add support for multiple confounding variables */
 	conf1?: any[]
-	/** Type of the confounding variable (categorical/float) */
-	conf1_type?: 'categorical' | 'float'
+	/** Type of the confounding variable (continuous/discrete) */
+	conf1_mode?: 'continuous' | 'discrete'
 	/** Number of variable genes to be included for DE analysis (optional) */
 	VarGenes?: number
 }