@sjcrh/proteinpaint-types 2.102.0 → 2.104.0

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-types",
-  "version": "2.102.0",
+  "version": "2.104.0",
   "type": "module",
   "description": "Shared type definitions between ProteinPaint server and client code",
   "main": "src/index.ts",

package/src/dataset.ts

@@ -338,8 +338,19 @@ so that it can work for a termdb-less ds, e.g. clinvar, where termdbConfig canno
 }
 
 type SvFusion = {
-	byrange: {
-		/** file paths for sv fusion data */
+	byrange?: {
+		/** gz BED file path for sv fusion data: chr \t start \t stop \t {}
+		will only contain events with coordinates in both breakpoints
+		TODO use string sample name
+		*/
+		file?: string
+	}
+	byname?: {
+		/** file paths for sv fusion TXT data. will contain events lacking breakpoint coordinates and can only be matched by gene names
+		should be tab seperated values with the following fields: (should leave as blank for values unknown)
+		gene_a	refseq_a	chr_a	position_a	strand_a	gene_b	refseq_b	chr_b	position_b	strand_b	origin	sample_name	fusion_gene	event_type(fusion or sv)
+		TODO use string sample name
+		*/
 		file?: string
 	}
 }
@@ -597,6 +608,8 @@ export type SingleCellSamples = {
 	or is missing, to be added at launch with built-in logic (samples are found by looking through singleCell.data.plots[].folder)
 	*/
 	get?: (q: any) => any
+	/** extra label to show along with sample, it becomes `sample.sample+' '+sample[newProp]` */
+	extraSampleTabLabel?: string
 }
 
 export type SingleCellDataGdc = {