@sjcrh/proteinpaint-types 2.100.0 → 2.101.0

package/dist/{chunk-MPWRZLLD.js → chunk-VSDZI6M3.js}

@@ -73,7 +73,7 @@ var validBoxPlotRequest = (input) => {
   const errors = [];
   const __is = (input2) => {
     const $join = import_typia.createValidate.join;
-    const $io0 = (input3) => "object" === typeof input3.tw && null !== input3.tw && $iu6(input3.tw) && "string" === typeof input3.genome && "string" === typeof input3.dslabel && "boolean" === typeof input3.orderByMedian && (void 0 === input3.overlayTw || "object" === typeof input3.overlayTw && null !== input3.overlayTw && $iu6(input3.overlayTw)) && (void 0 === input3.filter || "object" === typeof input3.filter && null !== input3.filter && $io11(input3.filter)) && true;
+    const $io0 = (input3) => "object" === typeof input3.tw && null !== input3.tw && $iu6(input3.tw) && "string" === typeof input3.genome && "string" === typeof input3.dslabel && "boolean" === typeof input3.isLogScale && "boolean" === typeof input3.orderByMedian && (void 0 === input3.overlayTw || "object" === typeof input3.overlayTw && null !== input3.overlayTw && $iu6(input3.overlayTw)) && (void 0 === input3.filter || "object" === typeof input3.filter && null !== input3.filter && $io11(input3.filter)) && true;
     const $io1 = (input3) => (void 0 === input3.id || "string" === typeof input3.id) && "string" === typeof input3.$id && (void 0 === input3.isAtomic || true === input3.isAtomic) && true && (void 0 === input3.settings || "object" === typeof input3.settings && null !== input3.settings && false === Array.isArray(input3.settings) && $io2(input3.settings)) && true && (void 0 === input3.minNumSamples || "number" === typeof input3.minNumSamples) && true && ("CatTWValues" === input3.type || "CatTWPredefinedGS" === input3.type || "CatTWCustomGS" === input3.type) && ("object" === typeof input3.q && null !== input3.q && $iu7(input3.q)) && ("object" === typeof input3.term && null !== input3.term && $io13(input3.term));
     const $io2 = (input3) => Object.keys(input3).every((key) => {
       const value = input3[key];
@@ -384,6 +384,10 @@ var validBoxPlotRequest = (input) => {
         path: _path2 + ".dslabel",
         expected: "string",
         value: input3.dslabel
+      }), "boolean" === typeof input3.isLogScale || $report(_exceptionable2, {
+        path: _path2 + ".isLogScale",
+        expected: "boolean",
+        value: input3.isLogScale
       }), "boolean" === typeof input3.orderByMedian || $report(_exceptionable2, {
         path: _path2 + ".orderByMedian",
         expected: "boolean",

package/dist/index.js

@@ -87,7 +87,7 @@ import {
   boxplotPayload,
   validBoxPlotRequest,
   validBoxPlotResponse
-} from "./chunk-MPWRZLLD.js";
+} from "./chunk-VSDZI6M3.js";
 import {
   termdbCategoriesPayload,
   validCategoriesRequest,

package/dist/termdb.boxplot.js

@@ -2,7 +2,7 @@ import {
   boxplotPayload,
   validBoxPlotRequest,
   validBoxPlotResponse
-} from "./chunk-MPWRZLLD.js";
+} from "./chunk-VSDZI6M3.js";
 import "./chunk-Z6B6IQIY.js";
 export {
   boxplotPayload,

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-types",
-  "version": "2.100.0",
+  "version": "2.101.0",
   "type": "module",
   "description": "Shared type definitions between ProteinPaint server and client code",
   "main": "src/index.ts",

package/src/dataset.ts

@@ -208,14 +208,15 @@ type VariantFilter = {
 
 /** one set of AC and AN info fields to retrieve data for this population */
 type PopulationINFOset = {
-	/** optional name for identifying this set, when the population is ancestry-stratified and a population has multiple sets */
+	/** optional term id for retrieving admix coefficient for an ancestry corresponding to this "PopulationINFOset" entry
+	for every sample carrying a variant.
+	this is required when sets[].length>1
+	this should not be set when sets[].length=1 */
 	key?: string
 	/** required info field */
 	infokey_AC: string
 	/** required info field */
 	infokey_AN: string
-	/** Optional */
-	termfilter_value?: string
 }
 
 /* define method to retrieve allele AC/AN in a population, by using bcf INFO fields; population could be ancestry-stratified
@@ -237,8 +238,6 @@ type Population = {
 	allowto_adjust_race?: boolean
 	/** when above is true, this flag is flip switch for this adjustion */
 	adjust_race?: boolean
-	/** optional term id used for race adjusting, must correspond to a term in dataset db */
-	termfilter?: string
 	/** if AC/AN of the population is ancestry-stratified, will be multiple elements of this array; otherwise just one */
 	sets: PopulationINFOset[]
 }

package/src/routes/termdb.boxplot.ts

@@ -9,6 +9,8 @@ export type BoxPlotRequest = {
 	tw: TermWrapper
 	genome: string
 	dslabel: string
+	/** if true, only return positive values */
+	isLogScale: boolean
 	/** sort plots by median value */
 	orderByMedian: boolean
 	/** term2 */