@sjcrh/proteinpaint-shared 2.88.2 → 2.95.0

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-shared",
-  "version": "2.88.2",
+  "version": "2.95.0",
   "description": "ProteinPaint code that is shared between server and client-side workspaces",
   "type": "module",
   "main": "src/index.js",

package/src/common.js

@@ -282,6 +282,9 @@ mclass[mclasssv] = {
 	key: mclasssv
 }
 
+// "CNV_amp" represents "CNV Gain" and is used in both 2-category and 5-category CNV data representation
+// "CNV_amplification" represents CNV amplification and is used in 5-category CNV
+// "CNV_amp" have to stay as-is since it may be hardcoded in lots of data beyond portal code.
 export const mclasscnvgain = 'CNV_amp'
 mclass[mclasscnvgain] = {
 	label: 'Copy number gain',
@@ -300,6 +303,25 @@ mclass[mclasscnvloss] = {
 	key: mclasscnvloss
 }
 
+// mclasscnvAmp is next level above mclasscnvgain and is used in 5-category CNV data
+export const mclasscnvAmp = 'CNV_amplification'
+mclass[mclasscnvAmp] = {
+	label: 'Copy number amplification',
+	color: '#900000',
+	dt: dtcnv,
+	desc: 'Copy number amplification',
+	key: mclasscnvAmp
+}
+
+export const mclasscnvHomozygousDel = 'CNV_homozygous_deletion'
+mclass[mclasscnvHomozygousDel] = {
+	label: 'Copy number homozygous deletion',
+	color: '#00457C',
+	dt: dtcnv,
+	desc: 'Copy number homozygous deletion',
+	key: mclasscnvHomozygousDel
+}
+
 export const mclasscnvloh = 'CNV_loh'
 mclass[mclasscnvloh] = { label: 'LOH', color: '#12EDFC', dt: dtcnv, desc: 'Loss of heterozygosity', key: mclasscnvloh }