@sjcrh/proteinpaint-shared 2.181.0 → 2.182.1

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Files changed (4) hide show
  1. package/package.json +1 -1
  2. package/src/common.js +2 -2
  3. package/src/termdb.usecase.js +5 -0
  4. package/src/terms.js +1 -1
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@sjcrh/proteinpaint-shared",
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- "version": "2.181.0",
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+ "version": "2.182.1",
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  "description": "ProteinPaint code that is shared between server and client-side workspaces",
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  "type": "module",
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  "main": "src/index.js",
package/src/common.js CHANGED
@@ -25,7 +25,7 @@ export class TermTypeGroups {
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  static ISOFORM_EXPRESSION = "Isoform Expression"
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  static GSEA = "GSEA"
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  static METABOLITE_INTENSITY = "Metabolite Intensity"
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- static PROTEOME_ABUNDANCE = "Whole Proteome Abundance"
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+ static PROTEOME_ABUNDANCE = "Proteome Abundance"
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  static MUTATION_CNV_FUSION = "Mutation/CNV/Fusion"
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  static MUTATION_SIGNATURE = "Mutation Signature"
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  static PROTEIN_EXPRESSION = "Protein Expression"
@@ -88,7 +88,7 @@ export const dt2label = {
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  [dtloh]: "LOH",
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  [dtgeneexpression]: "Gene Expression",
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  [dtmetaboliteintensity]: "Metabolite Intensity",
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- [dtproteomeabundance]: "Whole Proteome Abundance",
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+ [dtproteomeabundance]: "Proteome Abundance",
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  }
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  // Maps dt types to UI labels and lesion types for GRIN2
package/src/termdb.usecase.js CHANGED
@@ -265,6 +265,11 @@ export function isUsableTerm(term, _usecase, termdbConfig, ds) {
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  }
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  return uses
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+ case "proteinView":
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+ if (term.type == TermTypes.PROTEOME_ABUNDANCE) uses.add("plot")
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+ if (child_types.includes(TermTypes.PROTEOME_ABUNDANCE)) uses.add("branch")
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+ return uses
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+
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  default:
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  if (graphableTypes.has(term.type)) uses.add("plot")
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  if (!term.isleaf) uses.add("branch")
package/src/terms.js CHANGED
@@ -242,7 +242,7 @@ const typeMap = {
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  dnaMethylation: "DNA Methylation",
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  geneVariant: "Gene Variant",
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  metaboliteIntensity: "Metabolite Intensity",
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- proteomeAbundance: "Whole Proteome Abundance",
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+ proteomeAbundance: "Proteome Abundance",
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  multivalue: "Multi Value",
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  singleCellGeneExpression: "Single Cell, Gene Expression",
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  singleCellCellType: "Single Cell, Cell Type",