@sjcrh/proteinpaint-shared 2.140.1-1 → 2.142.0

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-shared",
-  "version": "2.140.1-1",
+  "version": "2.142.0",
   "description": "ProteinPaint code that is shared between server and client-side workspaces",
   "type": "module",
   "main": "src/index.js",

package/src/common.js

@@ -1193,6 +1193,8 @@ export function kernelEpanechnikov(k) {
 	}
 }
 
+/////////////////////// color sets /////////////////////////
+
 export const schemeCategory20 = [
 	'#1f77b4',
 	'#aec7e8',
@@ -1233,6 +1235,25 @@ export function getColors(number) {
 	return d3scale.scaleOrdinal(scheme)
 }
 
+// for now not using getColorScheme() for protein domains, because this color list have been in use since 2015...
+const proteinDomainColors = [
+	'#8dd3c7',
+	'#bebada',
+	'#fb8072',
+	'#80b1d3',
+	'#E8E89E',
+	'#a6d854',
+	'#fdb462',
+	'#ffd92f',
+	'#e5c494',
+	'#b3b3b3'
+]
+export function proteinDomainColorScale() {
+	return d3scale.scaleOrdinal().range(proteinDomainColors)
+}
+
+/////////////////////// end of color sets /////////////////////////
+
 export const truncatingMutations = ['F', 'N', 'L', 'P']
 export const proteinChangingMutations = ['F', 'N', 'L', 'P', 'D', 'I', 'ProteinAltering', 'M']
 export const synonymousMutations = ['S', 'Intron', 'Utr3', 'Utr5', 'noncoding', 'E']

package/src/termdb.bins.js

@@ -53,6 +53,9 @@ export default function validate_bins(binconfig) {
 					throw 'a custom last bin must not set a bin.stop value'
 				}
 			} else {
+				if (bin.startunbounded || bin.stopunbounded) {
+					throw 'bin.startunbounded and bin.stopunbounded must not be set for non-first/non-last bins'
+				}
 				if (!isStrictNumeric(bin.start)) throw 'bin.start must be numeric for a non-first bin'
 				if (!isStrictNumeric(bin.stop)) throw 'bin.stop must be numeric for a non-last bin'
 			}