@sjcrh/proteinpaint-shared 2.137.2-2 → 2.137.3

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-shared",
-  "version": "2.137.2-2",
+  "version": "2.137.3",
   "description": "ProteinPaint code that is shared between server and client-side workspaces",
   "type": "module",
   "main": "src/index.js",

package/src/common.js

@@ -1240,8 +1240,6 @@ export const mutationClasses = Object.values(mclass)
 export const CNVClasses = Object.values(mclass)
 	.filter(m => m.dt == dtcnv)
 	.map(m => m.key)
-export const cnvGainClasses = [mclasscnvgain, mclasscnvAmp]
-export const cnvLossClasses = [mclasscnvloss, mclasscnvHomozygousDel]
 
 // dt terms used for filtering variants for geneVariant term
 const dtTerms_temp = [

package/src/filter.js

@@ -253,55 +253,3 @@ export function getWrappedTvslst(lst = [], join = '', $id = null) {
 	if ($id !== null && filter.$id !== undefined) filter.$id = $id
 	return filter
 }
-/*
-This function is used where ever you need to build a group of categorical filters related.
- It builds the filter needed to retrieve a term values after filtering out samples according to the other filters provided.
- The profile filters, for example, use this function to get the filters needed to call filterTermValues, that populate the dropdowns in the controls.
- If no tw is provided it returns a filter that is the combination of all the categorical filters provided in the filterTWs array.
- Input:
- - filterTWs: list of term wrappers (tw) that are used to filter the samples
- - values: an object with term ids as keys and the values to filter by
- - tw: The term wrapper for which the filter is being built. If provided, it will be excluded from the filter.
- - globalFilter: an optional filter that will be joined with the generated filter
- Output:
- - a filter object that can be used to filter term values based on the provided term wrappers and values.
-*/
-export function getCategoricalTermFilter(filterTWs, values, tw, globalFilter) {
-	const excluded = []
-	if (tw) excluded.push(tw.term.id)
-	const lst = []
-	for (const tw of filterTWs) processTW(tw, values, excluded, lst)
-
-	let filter = {
-		type: 'tvslst',
-		in: true,
-		join: lst.length > 1 ? 'and' : '',
-		lst
-	}
-	if (globalFilter?.lst.length > 0) filter = filterJoin([globalFilter, filter])
-	return filter
-
-	function processTW(tw, values, excluded, lst) {
-		const value = values[tw.term.id]
-		if (value && !excluded.includes(tw.term.id)) {
-			if (Array.isArray(value)) {
-				const tvs = {
-					type: 'tvs',
-					tvs: {
-						term: tw.term,
-						values: []
-					}
-				}
-				for (const item of value) tvs.tvs.values.push({ key: item })
-				lst.push(tvs)
-			} else
-				lst.push({
-					type: 'tvs',
-					tvs: {
-						term: tw.term,
-						values: [{ key: value }]
-					}
-				})
-		}
-	}
-}