@sjcrh/proteinpaint-shared 2.113.0 → 2.114.0

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-shared",
-  "version": "2.113.0",
+  "version": "2.114.0",
   "description": "ProteinPaint code that is shared between server and client-side workspaces",
   "type": "module",
   "main": "src/index.js",

package/src/common.js

@@ -1153,6 +1153,48 @@ export const CNVClasses = Object.values(mclass)
 	.filter(m => m.dt == dtcnv)
 	.map(m => m.key)
 
+// custom dt terms used by variant filter of geneVariant term
+export const dtTerms = [
+	{
+		id: 'snvindel',
+		name: dt2label[dtsnvindel],
+		parent_id: null,
+		isleaf: true,
+		type: 'dtsnvindel',
+		dt: dtsnvindel,
+		values: Object.fromEntries(
+			mutationClasses.filter(key => key != 'Blank').map(key => [key, { label: mclass[key].label }])
+		)
+	},
+	{
+		id: 'cnv',
+		name: dt2label[dtcnv],
+		parent_id: null,
+		isleaf: true,
+		type: 'dtcnv',
+		dt: dtcnv,
+		values: Object.fromEntries([...CNVClasses, 'WT'].map(key => [key, { label: mclass[key].label }]))
+	},
+	{
+		id: 'fusion',
+		name: dt2label[dtfusionrna],
+		parent_id: null,
+		isleaf: true,
+		type: 'dtfusion',
+		dt: dtfusionrna,
+		values: Object.fromEntries([mclassfusionrna, 'WT'].map(key => [key, { label: mclass[key].label }]))
+	},
+	{
+		id: 'sv',
+		name: dt2label[dtsv],
+		parent_id: null,
+		isleaf: true,
+		type: 'dtsv',
+		dt: dtsv,
+		values: Object.fromEntries([mclasssv, 'WT'].map(key => [key, { label: mclass[key].label }]))
+	}
+]
+
 /*
 Term groupsetting used for geneVariant term
 NOTE: for each groupsetting, groups[] is ordered by priority
@@ -1161,7 +1203,6 @@ for example: in the 'Protein-changing vs. rest' groupsetting, the
 that have both missense and silent mutations are classified in the
 'Protein-changing' group
 */
-
 export const geneVariantTermGroupsetting = {
 	disabled: false, // as const, // TODO: may need to add is when converting common.js to .ts
 	type: 'custom',

package/src/termdb.usecase.js

@@ -11,11 +11,16 @@ export const graphableTypes = new Set([
 	'geneVariant',
 	'samplelst',
 	'geneExpression',
+	'dtcnv',
+	'dtsnvindel',
+	'dtfusion',
+	'dtsv',
 	TermTypes.METABOLITE_INTENSITY,
 	TermTypes.SINGLECELL_GENE_EXPRESSION,
 	TermTypes.SINGLECELL_CELLTYPE,
 	TermTypes.SNP
 ])
+
 /*
 isUsableTerm() will