@sjcrh/proteinpaint-shared 2.106.0 → 2.108.0

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-shared",
-  "version": "2.106.0",
+  "version": "2.108.0",
   "description": "ProteinPaint code that is shared between server and client-side workspaces",
   "type": "module",
   "main": "src/index.js",

package/src/filter.js

@@ -145,7 +145,7 @@ export function sample_match_termvaluesetting(row, filter, _term = null, sample
 						) && true //; console.log(114, t.values[0].dt, samplevalue.dt, thistermmatch)
 				}
 			} else {
-				throw 'unknown term type'
+				throw 'unknown term type [sample_match_termvaluesetting() shared/utils/src/filter.js]'
 			}
 
 			if (t.isnot) {

package/src/terms.js

@@ -185,24 +185,24 @@ export function getParentType(types, ds) {
 	return null //no parent found
 }
 
-//Returns human readable type (nice label) for the given type
-export function getReadableType(type) {
-	const typeMap = {
-		categorical: 'Categorical',
-		condition: 'Condition',
-		float: 'Numeric',
-		integer: 'Numeric',
-		geneExpression: 'Gene Expression',
-		geneVariant: 'Gene Variant',
-		metaboliteIntensity: 'Metabolite Intensity',
-		multiValue: 'Multi Value',
-		samplelst: 'Sample List',
-		singleCellGeneExpression: 'Single Cell, Gene Expression',
-		singleCellCellType: 'Single Cell, Cell Type',
-		snplocus: 'SNP Locus',
-		snp: 'SNP',
-		snplst: 'SNP List'
-	}
+//Returns human readable label for each term type; label is just for printing and not computing
+const typeMap = {
+	categorical: 'Categorical',
+	condition: 'Condition',
+	float: 'Numerical',
+	integer: 'Numerical',
+	geneExpression: 'Gene Expression',
+	geneVariant: 'Gene Variant',
+	metaboliteIntensity: 'Metabolite Intensity',
+	multiValue: 'Multi Value',
+	singleCellGeneExpression: 'Single Cell, Gene Expression',
+	singleCellCellType: 'Single Cell, Cell Type',
+	snplocus: 'SNP Locus',
+	snp: 'SNP',
+	snplst: 'SNP List',
+	numericDictTerm: 'Numeric Dictionary Term'
+}
 
-	return typeMap[type] || 'Unknown type [shared/utils/src/terms.js getReadableType()]'
+export function termType2label(type) {
+	return typeMap[type] || 'Unknown term type'
 }

package/src/violin.bins.js

@@ -117,7 +117,7 @@ function mean(data) {
 	return data.reduce((sum, value) => sum + value, 0) / data.length
 }
 
-function stdDev(data) {
+export function stdDev(data) {
 	const meanValue = mean(data)
 	const squaredDifferences = data.map(value => Math.pow(value - meanValue, 2))
 	const variance = squaredDifferences.reduce((sum, value) => sum + value, 0) / data.length