@sjcrh/proteinpaint-server 2.50.0 → 2.51.1

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@sjcrh/proteinpaint-server",
-  "version": "2.50.0",
+  "version": "2.51.1",
   "type": "module",
   "description": "a genomics visualization tool for exploring a cohort's genotype and phenotype data",
   "main": "src/app.js",

package/routes/termdb.singlecellSamples.js

@@ -88,18 +88,8 @@ function getDataNative(D, ds) {
       throw "duplicate plot.name";
     nameSet.add(plot.name);
   }
-  const _terms = [];
-  for (const tid of D.termIds) {
-    const t = ds.cohort.termdb.q.termjsonByOneid(tid);
-    if (!t)
-      throw "invalid term id from queries.singleCell.data.termIds[]";
-    _terms.push(t);
-  }
   D.get = async (q) => {
     try {
-      const tid2cellvalue = {};
-      for (const tid of D.termIds)
-        tid2cellvalue[tid] = {};
       const plots = [];
       for (const plot of D.plots) {
         const tsvfile = path.join(serverconfig.tpmasterdir, plot.folder, q.sample + plot.fileSuffix);
@@ -124,16 +114,13 @@ function getDataNative(D, ds) {
           if (!Number.isFinite(x) || !Number.isFinite(y))
             throw "x/y not number";
           cells.push({ cellId, x, y, category });
-          for (const tid of D.termIds) {
-            tid2cellvalue[tid][cellId] = l[1];
-          }
         }
         plots.push({ name: plot.name, cells, colorBy: plot.colorColumn?.name, colorMap: plot.colorColumn?.colorMap });
       }
       if (plots.length == 0) {
         return { nodata: true };
       }
-      return { plots, terms: _terms, tid2cellvalue };
+      return { plots };
     } catch (e) {
       if (e.stack)
         console.log(e.stack);