@sjcrh/proteinpaint-server 2.43.3-0 → 2.46.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (82) hide show
  1. package/dataset/clinvar.hg19.js +53 -52
  2. package/dataset/clinvar.hg38.js +74 -73
  3. package/dataset/clinvar.js +164 -47
  4. package/dataset/termdb.test.js +257 -0
  5. package/genome/CriGri.js +1859 -27
  6. package/genome/cgc.js +743 -7
  7. package/genome/danRer10.js +1108 -46
  8. package/genome/dm3.js +71 -44
  9. package/genome/dm6.js +1926 -45
  10. package/genome/galGal5.js +23522 -46
  11. package/genome/galGal6.js +512 -46
  12. package/genome/hg19.js +293 -198
  13. package/genome/hg38.js +472 -105
  14. package/genome/hg38.test.js +406 -40
  15. package/genome/hgvirus.js +45 -20
  16. package/genome/mm10.js +135 -67
  17. package/genome/mm9.js +116 -79
  18. package/genome/rn6.js +1002 -47
  19. package/package.json +32 -36
  20. package/routes/_template_.js +30 -0
  21. package/routes/burden.js +149 -0
  22. package/routes/dataset.js +266 -0
  23. package/routes/dsdata.js +127 -0
  24. package/routes/gdc.maf.js +120 -0
  25. package/routes/gdc.mafBuild.js +106 -0
  26. package/routes/gdc.topMutatedGenes.js +465 -0
  27. package/routes/gene2canonicalisoform.js +41 -0
  28. package/routes/genelookup.js +52 -0
  29. package/routes/genomes.js +144 -0
  30. package/routes/healthcheck.js +30 -0
  31. package/routes/hicdata.js +98 -0
  32. package/routes/hicstat.js +55 -0
  33. package/routes/isoformlst.js +57 -0
  34. package/routes/ntseq.js +43 -0
  35. package/routes/pdomain.js +61 -0
  36. package/routes/snp.js +107 -0
  37. package/routes/termdb.categories.js +209 -0
  38. package/routes/termdb.cluster.js +228 -0
  39. package/routes/termdb.cohort.summary.js +38 -0
  40. package/routes/termdb.cohorts.js +49 -0
  41. package/routes/termdb.config.js +201 -0
  42. package/routes/termdb.getdescrstats.js +102 -0
  43. package/routes/termdb.getnumericcategories.js +92 -0
  44. package/routes/termdb.getpercentile.js +108 -0
  45. package/routes/termdb.getrootterm.js +65 -0
  46. package/routes/termdb.gettermchildren.js +67 -0
  47. package/routes/termdb.singleSampleMutation.js +80 -0
  48. package/routes/termdb.singlecellData.js +46 -0
  49. package/routes/termdb.singlecellSamples.js +160 -0
  50. package/routes/termdb.termsbyids.js +59 -0
  51. package/routes/termdb.topVariablyExpressedGenes.js +171 -0
  52. package/routes/termdb.violin.js +77 -0
  53. package/src/app.js +41498 -0
  54. package/src/serverconfig.js +14 -8
  55. package/start.js +3 -3
  56. package/routes/README.md +0 -84
  57. package/routes/burden.ts +0 -143
  58. package/routes/gdc.maf.ts +0 -195
  59. package/routes/gdc.mafBuild.ts +0 -114
  60. package/routes/gdc.topMutatedGenes.ts +0 -586
  61. package/routes/genelookup.ts +0 -50
  62. package/routes/healthcheck.ts +0 -29
  63. package/routes/hicdata.ts +0 -111
  64. package/routes/hicstat.ts +0 -55
  65. package/routes/termdb.categories.ts +0 -245
  66. package/routes/termdb.cluster.ts +0 -248
  67. package/routes/termdb.getdescrstats.ts +0 -102
  68. package/routes/termdb.getnumericcategories.ts +0 -99
  69. package/routes/termdb.getpercentile.ts +0 -118
  70. package/routes/termdb.getrootterm.ts +0 -73
  71. package/routes/termdb.gettermchildren.ts +0 -82
  72. package/routes/termdb.singleSampleMutation.ts +0 -87
  73. package/routes/termdb.singlecellData.ts +0 -49
  74. package/routes/termdb.singlecellSamples.ts +0 -175
  75. package/routes/termdb.termsbyids.ts +0 -63
  76. package/routes/termdb.topVariablyExpressedGenes.ts +0 -214
  77. package/routes/termdb.violin.ts +0 -77
  78. package/server.js +0 -2
  79. package/server.js.map +0 -1
  80. package/shared/common.js +0 -1080
  81. package/shared/termdb.initbinconfig.js +0 -96
  82. package/shared/vcf.js +0 -629

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