@sjcrh/proteinpaint-server 2.41.0 → 2.41.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +3 -3
- package/routes/termdb.cluster.ts +1 -1
- package/routes/termdb.singlecellSamples.ts +2 -2
- package/server.js +1 -1
- package/server.js.map +1 -1
package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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1
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{
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2
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"name": "@sjcrh/proteinpaint-server",
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3
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-
"version": "2.41.
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3
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+
"version": "2.41.1",
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"description": "a genomics visualization tool for exploring a cohort's genotype and phenotype data",
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"main": "server.js",
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"bin": "start.js",
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@@ -58,9 +58,9 @@
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"dependencies": {
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"@sjcrh/augen": "2.35.0",
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"@sjcrh/proteinpaint-rust": "2.40.6",
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61
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-
"better-sqlite3": "^
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61
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+
"better-sqlite3": "^9.4.1",
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"body-parser": "^1.15.2",
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63
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-
"canvas": "~2.
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+
"canvas": "~2.11.2",
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"compression": "^1.6.2",
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"cookie-parser": "^1.4.5",
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"d3": "^7.6.1",
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package/routes/termdb.cluster.ts
CHANGED
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@@ -162,7 +162,7 @@ export async function validate_query_geneExpression(ds: any, genome: any) {
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}
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async function validateNative(q: GeneExpressionQueryNative, ds: any, genome: any) {
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165
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q.file = path.join(serverconfig.tpmasterdir, q.file)
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165
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if (!q.file.startsWith(serverconfig.tpmasterdir)) q.file = path.join(serverconfig.tpmasterdir, q.file)
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if (!q.samples) q.samples = []
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await utils.validate_tabixfile(q.file)
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q.nochr = await utils.tabix_is_nochr(q.file, null, genome)
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@@ -150,8 +150,8 @@ function validateDataNative(D: SingleCellDataNative, ds: any) {
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// each line is a cell
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const l = lines[i].split('\t')
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const cellId = l[0],
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153
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-
x = Number(l[
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154
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-
y = Number(l[
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153
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x = Number(l[plot.coordsColumns.x]), // FIXME standardize, or define idx in plot
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y = Number(l[plot.coordsColumns.y])
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const category = l[plot.colorColumn?.index] || ''
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if (!cellId) throw 'cell id missing'
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if (!Number.isFinite(x) || !Number.isFinite(y)) throw 'x/y not number'
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