@sjcrh/proteinpaint-server 2.39.6 → 2.40.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +1 -1
- package/routes/gdc.maf.ts +3 -2
- package/routes/gdc.topMutatedGenes.ts +328 -112
- package/routes/hicdata.ts +1 -1
- package/routes/termdb.singleSampleMutation.ts +1 -1
- package/routes/termdb.violin.ts +0 -1
- package/server.js +1 -1
- package/server.js.map +1 -1
- package/src/mds3.gdc.filter.js +39 -13
- package/utils/hclust.R +3 -1
package/src/mds3.gdc.filter.js
CHANGED
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@@ -47,19 +47,45 @@ export function filter2GDCfilter(f) {
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})
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continue
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}
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if (item.tvs.isnot) {
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obj.content.push({
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op: 'or',
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content: [
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{
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op: 'and',
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content: [
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{
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op: range.startinclusive ? '<' : '<=',
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content: { field: mayChangeCase2Cases(item.tvs.term.id), value: range.start }
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}
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]
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},
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{
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op: 'and',
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content: [
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{
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op: range.stopinclusive ? '>' : '>=',
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content: { field: mayChangeCase2Cases(item.tvs.term.id), value: range.stop }
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}
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]
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}
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]
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})
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} else {
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obj.content.push({
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op: 'and',
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content: [
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{
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op: range.startinclusive ? '>=' : '>',
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content: { field: mayChangeCase2Cases(item.tvs.term.id), value: range.start }
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},
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{
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op: range.stopinclusive ? '<=' : '<',
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content: { field: mayChangeCase2Cases(item.tvs.term.id), value: range.stop }
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}
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]
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})
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}
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}
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continue
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}
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package/utils/hclust.R
CHANGED
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@@ -14,7 +14,9 @@
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# To plot the heatmap uncomment line `library(ggplot2) and lines after "Visualization" comment
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-
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suppressWarnings({
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suppressPackageStartupMessages(library(jsonlite))
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})
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#library(flashClust)
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#library(ggplot2) # Uncomment this line to plot heatmap in R
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