@sjcrh/proteinpaint-server 2.35.1 → 2.36.0
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- package/package.json +1 -1
- package/routes/termdb.topVariablyExpressedGenes.ts +5 -1
- package/server.js +1 -1
- package/server.js.map +1 -1
package/package.json
CHANGED
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@@ -31,7 +31,11 @@ function init({ genomes }) {
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31
31
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const ds = genome.datasets?.[q.dslabel]
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if (!ds) throw 'invalid dslabel'
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if (!ds.queries?.topVariablyExpressedGenes) throw 'not supported on dataset'
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34
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+
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35
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+
const t: number = new Date().getTime()
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const genes = await ds.queries.topVariablyExpressedGenes.getGenes(q)
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+
if (serverconfig.debugmode) console.log('topVariablyExpressedGenes', new Date().getTime() - t, 'ms')
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+
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res.send({ genes } as TermdbTopVariablyExpressedGenesResponse)
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} catch (e: any) {
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res.send({ status: 'error', error: e.message || e })
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@@ -139,7 +143,7 @@ function gdcValidateQuery(ds: any, genome: any) {
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// limit the case_ids length, and restrict pool to CGC genes, otherwise the request times out !!!
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// must revert asap
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return {
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142
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-
case_ids: caseLst
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146
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+
case_ids: caseLst, //.slice(0, 20),
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gene_ids: tempGetCGCgenes(genome),
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selection_size: Number(q.maxGenes)
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}
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