@sjcrh/proteinpaint-server 2.34.1-0 → 2.34.1

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Files changed (3) hide show
  1. package/package.json +1 -1
  2. package/routes/gdc.topVariablyExpressedGenes.ts +3 -1
  3. package/server.js +1 -1
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@sjcrh/proteinpaint-server",
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- "version": "2.34.1-0",
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+ "version": "2.34.1",
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  "description": "a genomics visualization tool for exploring a cohort's genotype and phenotype data",
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  "main": "server.js",
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  "bin": "start.js",
package/routes/gdc.topVariablyExpressedGenes.ts CHANGED
@@ -10,6 +10,8 @@ import serverconfig from '#src/serverconfig.js'
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  // TODO make it general purpose based on ds.queries.geneExpression.topVariablyExpressedGenes{}; wait till case/gene link changes are done
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  // https://github.com/NCI-GDC/gdcapi/blob/develop/openapi/gene-expression.yaml
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  const apihost = process.env.PP_GDC_HOST || 'https://api.gdc.cancer.gov'
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+ // may override the geneExpHost for developers without access to qa/portal environments
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+ const geneExpHost = serverconfig.features?.geneExpHost || apihost
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  const gdcGenome = 'hg38'
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  const gdcDslabel = 'GDC'
@@ -65,7 +67,7 @@ async function getGenes(q: GdcTopVariablyExpressedGenesRequest, ds: any, genome:
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  }
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  // change to this when api is available on prod
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- const url = path.join(apihost, '/gene_expression/gene_selection')
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+ const url = path.join(geneExpHost, '/gene_expression/gene_selection')
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  try {
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  const response = await got.post(url, {