@sjcrh/proteinpaint-server 2.24.1 → 2.25.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +19 -5
- package/server.js +1 -1
- package/src/routes/healthcheck.ts +92 -0
- package/utils/cuminc.R +9 -7
package/package.json
CHANGED
|
@@ -1,24 +1,31 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@sjcrh/proteinpaint-server",
|
|
3
|
-
"version": "2.
|
|
3
|
+
"version": "2.25.0",
|
|
4
4
|
"description": "a genomics visualization tool for exploring a cohort's genotype and phenotype data",
|
|
5
5
|
"main": "server.js",
|
|
6
6
|
"bin": "start.js",
|
|
7
7
|
"imports": {
|
|
8
8
|
"#shared/*": "./shared/*.js",
|
|
9
|
-
"#src/*": "./src/*.js"
|
|
9
|
+
"#src/*": "./src/*.js",
|
|
10
|
+
"#routes/*": "./src/routes/*.ts"
|
|
10
11
|
},
|
|
11
12
|
"scripts": {
|
|
13
|
+
"prepare": "ts-patch install",
|
|
12
14
|
"dev": "webpack --env NODE_ENV=development --watch --color",
|
|
13
15
|
"start": "tsc --esModuleInterop genome/*.ts dataset/*.ts && nodemon --enable-source-maps server.js --watch ./server*.js* --watch dataset/*.ts --watch genome/*.ts",
|
|
14
16
|
"pretest": "tsc --esModuleInterop genome/*.ts dataset/*.ts && ./test/pretest.js",
|
|
15
17
|
"test": "webpack --env NODE_ENV=test exportsFilename=all-test-context.js && node --enable-source-maps test/serverTests.js",
|
|
18
|
+
"pretest:unit": "npm run checkers",
|
|
16
19
|
"test:unit": "webpack --env NODE_ENV=test exportsFilename=unit-test-context.js && tsc --esModuleInterop dataset/*.ts && node --enable-source-maps test/serverTests.js",
|
|
17
20
|
"pretest:integration": "tsc --esModuleInterop genome/*.ts dataset/*.ts",
|
|
18
21
|
"test:integration": "echo 'TODO: server integration tests'",
|
|
19
22
|
"prepack": "tsc --esModuleInterop genome/*.ts dataset/*.ts && webpack --env NODE_ENV=production",
|
|
20
23
|
"response": "nodemon modules/test/test.server.js --watch src",
|
|
21
|
-
"getconf": "../build/getConfigProp.js"
|
|
24
|
+
"getconf": "../build/getConfigProp.js",
|
|
25
|
+
"predoc": "npm run checkers",
|
|
26
|
+
"doc": "typedoc --json ../public/docs/server.json",
|
|
27
|
+
"checkers": "typia generate --input shared/checkers/raw --output shared/checkers/transformed --project ./shared/checkers/tsconfig.json",
|
|
28
|
+
"doctest": "npm run checkers && npm run test:unit"
|
|
22
29
|
},
|
|
23
30
|
"author": "",
|
|
24
31
|
"license": "SEE LICENSE IN ./LICENSE",
|
|
@@ -35,14 +42,19 @@
|
|
|
35
42
|
"nodemon": "^2.0.19",
|
|
36
43
|
"prettier": "^2.8.8",
|
|
37
44
|
"tape": "^5.2.2",
|
|
45
|
+
"ts-node": "^10.9.1",
|
|
46
|
+
"ts-patch": "^3.0.2",
|
|
47
|
+
"typedoc": "^0.24.8",
|
|
48
|
+
"typedoc-plugin-replace-text": "^3.1.0",
|
|
38
49
|
"typescript": "^5.0.3",
|
|
50
|
+
"typia": "^4.1.14",
|
|
39
51
|
"webpack": "^5.76.0",
|
|
40
52
|
"webpack-cli": "^4.9.2",
|
|
41
53
|
"webpack-node-externals": "^3.0.0",
|
|
42
54
|
"webpack-notifier": "^1.15.0"
|
|
43
55
|
},
|
|
44
56
|
"dependencies": {
|
|
45
|
-
"@sjcrh/proteinpaint-rust": "2.
|
|
57
|
+
"@sjcrh/proteinpaint-rust": "2.25.0",
|
|
46
58
|
"better-sqlite3": "^7.5.3",
|
|
47
59
|
"body-parser": "^1.15.2",
|
|
48
60
|
"canvas": "~2.9.3",
|
|
@@ -60,7 +72,8 @@
|
|
|
60
72
|
"minimatch": "^3.1.2",
|
|
61
73
|
"node-fetch": "^2.6.1",
|
|
62
74
|
"partjson": "^0.58.1",
|
|
63
|
-
"tiny-async-pool": "^1.2.0"
|
|
75
|
+
"tiny-async-pool": "^1.2.0",
|
|
76
|
+
"typedoc-plugin-missing-exports": "^2.0.1"
|
|
64
77
|
},
|
|
65
78
|
"repository": {
|
|
66
79
|
"type": "git",
|
|
@@ -77,6 +90,7 @@
|
|
|
77
90
|
"src/mds3.gdc.filter.js",
|
|
78
91
|
"src/checkReadingFrame.js",
|
|
79
92
|
"src/bedj.parseBed.js",
|
|
93
|
+
"src/routes/*",
|
|
80
94
|
"cards/*",
|
|
81
95
|
"server.js*",
|
|
82
96
|
"start.js",
|