@sjcrh/proteinpaint-server 2.192.0 → 2.194.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dataset/termdb.test.js +4 -0
- package/package.json +4 -4
- package/src/app.js +4230 -3878
- package/routes/gdc.grin2.list.js +0 -238
- package/routes/gdc.grin2.run.js +0 -127
package/dataset/termdb.test.js
CHANGED
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@@ -350,6 +350,9 @@ function termdb_test_default() {
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dtLst: [2, 5]
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},
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cnv: {
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+
// cnv values in this ds are log2 ratios (diploid baseline 0); declared explicitly so
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// GRIN2 classifies gain/loss with baseline-0 semantics. Absent => same default.
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type: "log2ratio",
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file: "files/hg38/TermdbTest/TermdbTest_CNV_gene.gz"
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},
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itd: {
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@@ -445,6 +448,7 @@ function termdb_test_default() {
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},
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trackLst: {
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jsonFile: "files/hg38/TermdbTest/trackLst/facet.json",
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+
facetTwLst: [{ id: "diaggrp" }, { id: "agedx" }],
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activeTracks: ["bw 1", "bed 1"]
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},
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chat: {}
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@sjcrh/proteinpaint-server",
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-
"version": "2.
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+
"version": "2.194.0",
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"type": "module",
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"description": "a genomics visualization tool for exploring a cohort's genotype and phenotype data",
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"main": "src/app.js",
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@@ -59,11 +59,11 @@
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},
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"dependencies": {
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"@sjcrh/augen": "2.190.0",
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-
"@sjcrh/proteinpaint-python": "2.
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"@sjcrh/proteinpaint-python": "2.194.0",
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"@sjcrh/proteinpaint-r": "2.190.0",
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-
"@sjcrh/proteinpaint-rust": "2.
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"@sjcrh/proteinpaint-rust": "2.193.0",
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"@sjcrh/proteinpaint-shared": "2.192.0",
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-
"@sjcrh/proteinpaint-types": "2.
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"@sjcrh/proteinpaint-types": "2.194.0",
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"@types/express": "^5.0.0",
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"@types/express-session": "^1.18.1",
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"better-sqlite3": "^12.4.1",
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