@sjcrh/proteinpaint-server 2.184.0 → 2.185.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dataset/protected.test.js +5 -0
- package/dataset/termdb.test.js +1 -1
- package/package.json +5 -5
- package/routes/brainImagingSamples.js +15 -4
- package/routes/genesetEnrichment.js +101 -42
- package/routes/profile.radar2.js +112 -0
- package/routes/profile.radarFacility2.js +148 -0
- package/routes/saveWSIAnnotation.js +21 -0
- package/routes/termdb.DE.js +31 -238
- package/routes/termdb.chat3.js +191 -0
- package/routes/termdb.cluster.js +44 -9
- package/routes/termdb.config.js +5 -3
- package/routes/termdb.diffMeth.js +4 -2
- package/routes/termdb.proteome.js +28 -20
- package/routes/termdb.singlecellDEgenes.js +2 -1
- package/routes/termdb.singlecellSamples.js +36 -5
- package/src/app.js +3517 -2542
- package/src/serverconfig.js +16 -1
package/src/serverconfig.js
CHANGED
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@@ -162,6 +162,16 @@ if (serverconfig.debugmode && !serverconfig.binpath.includes('sjcrh/')) {
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serverconfig.routeSetters = routeSetters
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}
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165
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+
if (typeof serverconfig.dsCredentials == 'string') {
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const dsCredentialsFile = serverconfig.dsCredentials
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try {
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const json = fs.readFileSync(dsCredentialsFile, { encoding: 'utf8' })
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serverconfig.dsCredentials = JSON.parse(json)
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} catch (e) {
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throw `invalid json file, serverconfig.dsCredentials='${dsCredentialsFile}': ${e}`
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}
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}
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if (serverconfig.debugmode) {
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// should be able to run this in local dev and test environments that use containers
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const hg38test = serverconfig.genomes.find(g => g.name == 'hg38-test')
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@@ -322,7 +332,12 @@ function mayUpdateTestDatasets(datasets, serverconfig) {
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id: 'XYZ',
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label: 'XYZ cohort'
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}
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-
]
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],
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demoToken: {
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secret: '...', // pragma: allowlist secret
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roles: ['user'],
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referers: ['/demo-login.html']
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}
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}
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}
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}
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