@sjcrh/proteinpaint-server 2.171.0-0 → 2.171.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +3 -3
- package/routes/aiProjectAdmin.js +1 -0
- package/routes/termdb.config.js +2 -1
- package/src/app.js +57 -6
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@sjcrh/proteinpaint-server",
|
|
3
|
-
"version": "2.171.0
|
|
3
|
+
"version": "2.171.0",
|
|
4
4
|
"type": "module",
|
|
5
5
|
"description": "a genomics visualization tool for exploring a cohort's genotype and phenotype data",
|
|
6
6
|
"main": "src/app.js",
|
|
@@ -64,9 +64,9 @@
|
|
|
64
64
|
"@sjcrh/augen": "2.143.0",
|
|
65
65
|
"@sjcrh/proteinpaint-python": "2.171.0-0",
|
|
66
66
|
"@sjcrh/proteinpaint-r": "2.152.1-0",
|
|
67
|
-
"@sjcrh/proteinpaint-rust": "2.171.0
|
|
67
|
+
"@sjcrh/proteinpaint-rust": "2.171.0",
|
|
68
68
|
"@sjcrh/proteinpaint-shared": "2.171.0-0",
|
|
69
|
-
"@sjcrh/proteinpaint-types": "2.171.0
|
|
69
|
+
"@sjcrh/proteinpaint-types": "2.171.0",
|
|
70
70
|
"@types/express": "^5.0.0",
|
|
71
71
|
"@types/express-session": "^1.18.1",
|
|
72
72
|
"better-sqlite3": "^12.4.1",
|
package/routes/aiProjectAdmin.js
CHANGED
|
@@ -61,6 +61,7 @@ function init({ genomes }) {
|
|
|
61
61
|
} else if (query.for === "filterImages") {
|
|
62
62
|
const q = ds.cohort.termdb.q;
|
|
63
63
|
const data = await q.getFilteredImages(query.project.filter);
|
|
64
|
+
data.selectedImages = await ds.queries?.WSImages?.selectWSIImages();
|
|
64
65
|
res.status(200).send({
|
|
65
66
|
status: "ok",
|
|
66
67
|
data
|
package/routes/termdb.config.js
CHANGED
|
@@ -143,7 +143,8 @@ function addNonDictionaryQueries(c, ds, genome) {
|
|
|
143
143
|
// some of the stuff here are to provide user-selectable choices
|
|
144
144
|
// e.g. computing methods, info fields, populations.
|
|
145
145
|
details: q.snvindel.details,
|
|
146
|
-
populations: q.snvindel.populations
|
|
146
|
+
populations: q.snvindel.populations,
|
|
147
|
+
mafFilter: q.snvindel.mafFilter
|
|
147
148
|
};
|
|
148
149
|
if (q.snvindel.byisoform?.processTwsInOneQuery) q2.snvindel.byisoform = { processTwsInOneQuery: true };
|
|
149
150
|
}
|