@sjcrh/proteinpaint-server 2.16.0 → 2.17.0

package/genome/hg38.js

@@ -1,474 +1,108 @@
-const clinvar = require('../dataset/clinvar')
-module.exports = {
-	species: 'human',
-	genomefile: 'genomes/hg38.gz',
-	genedb: {
-		dbfile: 'anno/genes.hg38.db'
-	},
-
-	termdbs: {
-		msigdb: {
-			label: 'MSigDB', // to be compatible with ds.label
-			cohort: {
-				db: { file: 'anno/msigdb/db' },
-				termdb: {}
-			}
-		}
-	},
-
-	proteindomain: {
-		dbfile: 'anno/db/proteindomain.db',
-		statement: 'select data from domain where isoform=? collate nocase'
-	},
-	snp: {
-		bigbedfile: 'anno/dbsnp.hg38.bb'
-	},
-	fimo_motif: {
-		db: 'utils/meme/motif_databases/HUMAN/HOCOMOCOv11_full_HUMAN_mono_meme_format.meme',
-		annotationfile: 'utils/meme/motif_databases/HUMAN/HOCOMOCOv11_full_annotation_HUMAN_mono.tsv'
-	},
-	clinvarVCF: {
-		file: 'hg38/clinvar.hg38.hgvs_short.vep.bcf.gz',
-		infokey: 'CLNSIG',
-		categories: clinvar.clinsig
-	},
-	tracks: [
-		{
-			__isgene: true,
-			translatecoding: true,
-			file: 'anno/refGene.hg38.gz',
-			type: 'bedj',
-			name: 'RefGene',
-			stackheight: 16,
-			stackspace: 1,
-			vpad: 4,
-			color: '#1D591D'
-		},
-		{
-			__isgene: true,
-			file: 'anno/gencode.v41.hg38.gz',
-			translatecoding: true,
-			categories: {
-				coding: { color: '#004D99', label: 'Coding gene' },
-				nonCoding: { color: '#009933', label: 'Noncoding gene' },
-				problem: { color: '#FF3300', label: 'Problem' },
-				pseudo: { color: '#FF00CC', label: 'Pseudogene' }
-			},
-			type: 'bedj',
-			name: 'GENCODE v41',
-			stackheight: 16,
-			stackspace: 1,
-			vpad: 4
-		},
-		{
-			type: 'bedj',
-			name: 'RepeatMasker',
-			stackheight: 14,
-			file: 'anno/rmsk.hg38.gz',
-			onerow: true,
-			categories: {
-				SINE: { color: '#ED8C8E', label: 'SINE' },
-				LINE: { color: '#EDCB8C', label: 'LINE' },
-				LTR: { color: '#E38CED', label: 'LTR' },
-				DNA: { color: '#8C8EED', label: 'DNA transposon' },
-				simple: { color: '#8EB88C', label: 'Simple repeats' },
-				low_complexity: { color: '#ACEBA9', label: 'Low complexity' },
-				satellite: { color: '#B59A84', label: 'Satellite' },
-				RNA: { color: '#9DE0E0', label: 'RNA repeat' },
-				other: { color: '#9BADC2', label: 'Other' },
-				unknown: { color: '#858585', label: 'Unknown' }
-			}
-		}
-	],
-	defaultcoord: { chr: 'chr17', start: 7666657, stop: 7688274 },
-	hicenzymefragment: [
-		{
-			enzyme: 'DpnII',
-			file: 'anno/hicFragment/hic.DpnII.hg38.gz'
-		},
-		{
-			enzyme: 'EcoRI',
-			file: 'anno/hicFragment/hic.EcoRI.hg38.gz'
-		},
-		{
-			enzyme: 'HindIII',
-			file: 'anno/hicFragment/hic.HindIII.hg38.gz'
-		},
-		{
-			enzyme: 'MboI',
-			file: 'anno/hicFragment/hic.MboI.hg38.gz'
-		},
-		{
-			enzyme: 'NcoI',
-			file: 'anno/hicFragment/hic.NcoI.hg38.gz'
-		}
-	],
-
-	majorchr: `chr1	248956422
-chr2	242193529
-chr3	198295559
-chr4	190214555
-chr5	181538259
-chr6	170805979
-chr7	159345973
-chr8	145138636
-chr9	138394717
-chr10	133797422
-chr11	135086622
-chr12	133275309
-chr13	114364328
-chr14	107043718
-chr15	101991189
-chr16	90338345
-chr17	83257441
-chr18	80373285
-chr19	58617616
-chr20	64444167
-chr21	46709983
-chr22	50818468
-chrX	156040895
-chrY	57227415
-chrM	16569`,
-	minorchr: `chr15_KI270905v1_alt	5161414 chr6_GL000256v2_alt	4929269 chr6_GL000254v2_alt	4827813 chr6_GL000251v2_alt	4795265 chr6_GL000253v2_alt	4677643
-	chr6_GL000250v2_alt	4672374 chr6_GL000255v2_alt	4606388 chr6_GL000252v2_alt	4604811 chr17_KI270857v1_alt	2877074 chr16_KI270853v1_alt	2659700
-	chr16_KI270728v1_random	1872759 chr17_GL000258v2_alt	1821992 chr5_GL339449v2_alt	1612928 chr14_KI270847v1_alt	1511111 chr17_KI270908v1_alt	1423190
-	chr14_KI270846v1_alt	1351393 chr5_KI270897v1_alt	1144418 chr7_KI270803v1_alt	1111570 chr19_GL949749v2_alt	1091841 chr19_KI270938v1_alt	1066800
-	chr19_GL949750v2_alt	1066390 chr19_GL949748v2_alt	1064304 chr19_GL949751v2_alt	1002683 chr19_GL949746v1_alt	987716 chr19_GL949752v1_alt	987100
-	chr8_KI270821v1_alt	985506 chr1_KI270763v1_alt	911658 chr6_KI270801v1_alt	870480 chr19_GL949753v2_alt	796479 chr19_GL949747v2_alt	729520
-	chr8_KI270822v1_alt	624492 chr4_GL000257v2_alt	586476 chr12_KI270904v1_alt	572349 chr4_KI270925v1_alt	555799 chr15_KI270852v1_alt	478999
-	chr15_KI270727v1_random	448248 chr9_KI270823v1_alt	439082 chr15_KI270850v1_alt	430880 chr1_KI270759v1_alt	425601 chr12_GL877876v1_alt	408271
-	chrUn_KI270442v1	392061 chr17_KI270862v1_alt	391357 chr15_GL383555v2_alt	388773 chr19_GL383573v1_alt	385657 chr4_KI270896v1_alt	378547
-	chr4_GL383528v1_alt	376187 chr17_GL383563v3_alt	375691 chr8_KI270810v1_alt	374415 chr1_GL383520v2_alt	366580 chr1_KI270762v1_alt	354444
-	chr15_KI270848v1_alt	327382 chr17_KI270909v1_alt	325800 chr14_KI270844v1_alt	322166 chr8_KI270900v1_alt	318687 chr10_GL383546v1_alt	309802
-	chr13_KI270838v1_alt	306913 chr8_KI270816v1_alt	305841 chr22_KI270879v1_alt	304135 chr8_KI270813v1_alt	300230 chr11_KI270831v1_alt	296895
-	chr15_GL383554v1_alt	296527 chr8_KI270811v1_alt	292436 chr18_GL383567v1_alt	289831 chrX_KI270880v1_alt	284869 chr8_KI270812v1_alt	282736
-	chr19_KI270921v1_alt	282224 chr17_KI270729v1_random	280839 chr17_JH159146v1_alt	278131 chrX_KI270913v1_alt	274009 chr6_KI270798v1_alt	271782
-	chr7_KI270808v1_alt	271455 chr22_KI270876v1_alt	263666 chr15_KI270851v1_alt	263054 chr22_KI270875v1_alt	259914 chr1_KI270766v1_alt	256271
-	chr19_KI270882v1_alt	248807 chr3_KI270778v1_alt	248252 chr15_KI270849v1_alt	244917 chr4_KI270786v1_alt	244096 chr12_KI270835v1_alt	238139
-	chr17_KI270858v1_alt	235827 chr19_KI270867v1_alt	233762 chr16_KI270855v1_alt	232857 chr8_KI270926v1_alt	229282 chr5_GL949742v1_alt	226852
-	chr3_KI270780v1_alt	224108 chr17_GL383565v1_alt	223995 chr2_KI270774v1_alt	223625 chr4_KI270790v1_alt	220246 chr11_KI270927v1_alt	218612
-	chr19_KI270932v1_alt	215732 chr11_KI270903v1_alt	214625 chr2_KI270894v1_alt	214158 chr14_GL000225v1_random	211173 chrUn_KI270743v1	210658
-	chr11_KI270832v1_alt	210133 chr7_KI270805v1_alt	209988 chr4_GL000008v2_random	209709 chr7_KI270809v1_alt	209586 chr19_KI270887v1_alt	209512
-	chr4_KI270789v1_alt	205944 chr3_KI270779v1_alt	205312 chr19_KI270914v1_alt	205194 chr19_KI270886v1_alt	204239 chr11_KI270829v1_alt	204059
-	chr14_GL000009v2_random	201709 chr21_GL383579v2_alt	201197 chr11_JH159136v1_alt	200998 chr19_KI270930v1_alt	200773 chrUn_KI270747v1	198735
-	chr18_GL383571v1_alt	198278
-	chr19_KI270920v1_alt	198005
-	chr6_KI270797v1_alt	197536
-	chr3_KI270935v1_alt	197351
-	chr17_KI270861v1_alt	196688
-	chr15_KI270906v1_alt	196384
-	chr5_KI270791v1_alt	195710
-	chr14_KI270722v1_random	194050
-	chr16_GL383556v1_alt	192462
-	chr13_KI270840v1_alt	191684
-	chr14_GL000194v1_random	191469
-	chr11_JH159137v1_alt	191409
-	chr19_KI270917v1_alt	190932
-	chr7_KI270899v1_alt	190869
-	chr19_KI270923v1_alt	189352
-	chr10_KI270825v1_alt	188315
-	chr19_GL383576v1_alt	188024
-	chr19_KI270922v1_alt	187935
-	chrUn_KI270742v1	186739
-	chr22_KI270878v1_alt	186262
-	chr19_KI270929v1_alt	186203
-	chr11_KI270826v1_alt	186169
-	chr6_KB021644v2_alt	185823
-	chr17_GL000205v2_random	185591
-	chr1_KI270765v1_alt	185285
-	chr19_KI270916v1_alt	184516
-	chr19_KI270890v1_alt	184499
-	chr3_KI270784v1_alt	184404
-	chr12_GL383551v1_alt	184319
-	chr20_KI270870v1_alt	183433
-	chrUn_GL000195v1	182896
-	chr1_GL383518v1_alt	182439
-	chr22_KI270736v1_random	181920
-	chr10_KI270824v1_alt	181496
-	chr14_KI270845v1_alt	180703
-	chr3_GL383526v1_alt	180671
-	chr13_KI270839v1_alt	180306
-	chr22_KI270733v1_random	179772
-	chrUn_GL000224v1	179693
-	chr10_GL383545v1_alt	179254
-	chrUn_GL000219v1	179198
-	chr5_KI270792v1_alt	179043
-	chr17_KI270860v1_alt	178921
-	chr19_GL000209v2_alt	177381
-	chr11_KI270830v1_alt	177092
-	chr9_KI270719v1_random	176845
-	chrUn_GL000216v2	176608
-	chr22_KI270928v1_alt	176103
-	chr1_KI270712v1_random	176043
-	chr6_KI270800v1_alt	175808
-	chr1_KI270706v1_random	175055
-	chr2_KI270776v1_alt	174166
-	chr18_KI270912v1_alt	174061
-	chr3_KI270777v1_alt	173649
-	chr5_GL383531v1_alt	173459
-	chr3_JH636055v2_alt	173151
-	chr14_KI270725v1_random	172810
-	chr5_KI270796v1_alt	172708
-	chr9_GL383541v1_alt	171286
-	chr19_KI270885v1_alt	171027
-	chr19_KI270919v1_alt	170701
-	chr19_KI270889v1_alt	170698
-	chr19_KI270891v1_alt	170680
-	chr19_KI270915v1_alt	170665
-	chr19_KI270933v1_alt	170537
-	chr19_KI270883v1_alt	170399
-	chr19_GL383575v2_alt	170222
-	chr19_KI270931v1_alt	170148
-	chr12_GL383550v2_alt	169178
-	chr13_KI270841v1_alt	169134
-	chrUn_KI270744v1	168472
-	chr18_KI270863v1_alt	167999
-	chr18_GL383569v1_alt	167950
-	chr12_GL877875v1_alt	167313
-	chr21_KI270874v1_alt	166743
-	chr3_KI270924v1_alt	166540
-	chr1_KI270761v1_alt	165834
-	chr3_KI270937v1_alt	165607
-	chr22_KI270734v1_random	165050
-	chr18_GL383570v1_alt	164789
-	chr5_KI270794v1_alt	164558
-	chr4_GL383527v1_alt	164536
-	chrUn_GL000213v1	164239
-	chr3_KI270936v1_alt	164170
-	chr3_KI270934v1_alt	163458
-	chr9_GL383539v1_alt	162988
-	chr3_KI270895v1_alt	162896
-	chr22_GL383582v2_alt	162811
-	chr3_KI270782v1_alt	162429
-	chr1_KI270892v1_alt	162212
-	chrUn_GL000220v1	161802
-	chr2_KI270767v1_alt	161578
-	chr2_KI270715v1_random	161471
-	chr2_KI270893v1_alt	161218
-	chrUn_GL000218v1	161147
-	chr18_GL383572v1_alt	159547
-	chr8_KI270817v1_alt	158983
-	chr4_KI270788v1_alt	158965
-	chrUn_KI270749v1	158759
-	chr7_KI270806v1_alt	158166
-	chr7_KI270804v1_alt	157952
-	chr18_KI270911v1_alt	157710
-	chrUn_KI270741v1	157432
-	chr17_KI270910v1_alt	157099
-	chr19_KI270884v1_alt	157053
-	chr19_GL383574v1_alt	155864
-	chr19_KI270888v1_alt	155532
-	chr3_GL000221v1_random	155397
-	chr11_GL383547v1_alt	154407
-	chr2_KI270716v1_random	153799
-	chr12_GL383553v2_alt	152874
-	chr6_KI270799v1_alt	152148
-	chr22_KI270731v1_random	150754
-	chrUn_KI270751v1	150742
-	chrUn_KI270750v1	148850
-	chr8_KI270818v1_alt	145606
-	chrX_KI270881v1_alt	144206
-	chr21_KI270873v1_alt	143900
-	chr2_GL383521v1_alt	143390
-	chr8_KI270814v1_alt	141812
-	chr12_GL383552v1_alt	138655
-	chrUn_KI270519v1	138126
-	chr2_KI270775v1_alt	138019
-	chr17_KI270907v1_alt	137721
-	chrUn_GL000214v1	137718
-	chr8_KI270901v1_alt	136959
-	chr2_KI270770v1_alt	136240
-	chr16_KI270854v1_alt	134193
-	chr8_KI270819v1_alt	133535
-	chr17_GL383564v2_alt	133151
-	chr2_KI270772v1_alt	133041
-	chr8_KI270815v1_alt	132244
-	chr5_KI270795v1_alt	131892
-	chr5_KI270898v1_alt	130957
-	chr20_GL383577v2_alt	128386
-	chr1_KI270708v1_random	127682
-	chr7_KI270807v1_alt	126434
-	chr5_KI270793v1_alt	126136
-	chr6_GL383533v1_alt	124736
-	chr2_GL383522v1_alt	123821
-	chr19_KI270918v1_alt	123111
-	chr12_GL383549v1_alt	120804
-	chr2_KI270769v1_alt	120616
-	chr4_KI270785v1_alt	119912
-	chr12_KI270834v1_alt	119498
-	chr7_GL383534v2_alt	119183
-	chr20_KI270869v1_alt	118774
-	chr21_GL383581v2_alt	116689
-	chr3_KI270781v1_alt	113034
-	chr17_KI270730v1_random	112551
-	chrUn_KI270438v1	112505
-	chr4_KI270787v1_alt	111943
-	chr18_KI270864v1_alt	111737
-	chr2_KI270771v1_alt	110395
-	chr1_GL383519v1_alt	110268
-	chr2_KI270768v1_alt	110099
-	chr1_KI270760v1_alt	109528
-	chr3_KI270783v1_alt	109187
-	chr17_KI270859v1_alt	108763
-	chr11_KI270902v1_alt	106711
-	chr18_GL383568v1_alt	104552
-	chr22_KI270737v1_random	103838
-	chr13_KI270843v1_alt	103832
-	chr22_KI270877v1_alt	101331
-	chr5_GL383530v1_alt	101241
-	chr11_KI270721v1_random	100316
-	chr22_KI270738v1_random	99375
-	chr22_GL383583v2_alt	96924
-	chr2_GL582966v2_alt	96131
-	chrUn_KI270748v1	93321
-	chrUn_KI270435v1	92983
-	chr5_GL000208v1_random	92689
-	chrUn_KI270538v1	91309
-	chr17_GL383566v1_alt	90219
-	chr16_GL383557v1_alt	89672
-	chr17_JH159148v1_alt	88070
-	chr5_GL383532v1_alt	82728
-	chr21_KI270872v1_alt	82692
-	chrUn_KI270756v1	79590
-	chr6_KI270758v1_alt	76752
-	chr12_KI270833v1_alt	76061
-	chr6_KI270802v1_alt	75005
-	chr21_GL383580v2_alt	74653
-	chr22_KB663609v1_alt	74013
-	chr22_KI270739v1_random	73985
-	chr9_GL383540v1_alt	71551
-	chrUn_KI270757v1	71251
-	chr2_KI270773v1_alt	70887
-	chr17_JH159147v1_alt	70345
-	chr11_KI270827v1_alt	67707
-	chr1_KI270709v1_random	66860
-	chrUn_KI270746v1	66486
-	chr16_KI270856v1_alt	63982
-	chr21_GL383578v2_alt	63917
-	chrUn_KI270753v1	62944
-	chr19_KI270868v1_alt	61734
-	chr9_GL383542v1_alt	60032
-	chr20_KI270871v1_alt	58661
-	chr12_KI270836v1_alt	56134
-	chr19_KI270865v1_alt	52969
-	chr1_KI270764v1_alt	50258
-	chrUn_KI270589v1	44474
-	chr14_KI270726v1_random	43739
-	chr19_KI270866v1_alt	43156
-	chr22_KI270735v1_random	42811
-	chr1_KI270711v1_random	42210
-	chrUn_KI270745v1	41891
-	chr1_KI270714v1_random	41717
-	chr22_KI270732v1_random	41543
-	chr1_KI270713v1_random	40745
-	chrUn_KI270754v1	40191
-	chr1_KI270710v1_random	40176
-	chr12_KI270837v1_alt	40090
-	chr9_KI270717v1_random	40062
-	chr14_KI270724v1_random	39555
-	chr9_KI270720v1_random	39050
-	chr14_KI270723v1_random	38115
-	chr9_KI270718v1_random	38054
-	chrUn_KI270317v1	37690
-	chr13_KI270842v1_alt	37287
-	chrY_KI270740v1_random	37240
-	chrUn_KI270755v1	36723
-	chr8_KI270820v1_alt	36640
-	chr1_KI270707v1_random	32032
-	chrUn_KI270579v1	31033
-	chrUn_KI270752v1	27745
-	chrUn_KI270512v1	22689
-	chrUn_KI270322v1	21476
-	chrUn_GL000226v1	15008
-	chrUn_KI270311v1	12399
-	chrUn_KI270366v1	8320
-	chrUn_KI270511v1	8127
-	chrUn_KI270448v1	7992
-	chrUn_KI270521v1	7642
-	chrUn_KI270581v1	7046
-	chrUn_KI270582v1	6504
-	chrUn_KI270515v1	6361
-	chrUn_KI270588v1	6158
-	chrUn_KI270591v1	5796
-	chrUn_KI270522v1	5674
-	chrUn_KI270507v1	5353
-	chrUn_KI270590v1	4685
-	chrUn_KI270584v1	4513
-	chrUn_KI270320v1	4416
-	chrUn_KI270382v1	4215
-	chrUn_KI270468v1	4055
-	chrUn_KI270467v1	3920
-	chrUn_KI270362v1	3530
-	chrUn_KI270517v1	3253
-	chrUn_KI270593v1	3041
-	chrUn_KI270528v1	2983
-	chrUn_KI270587v1	2969
-	chrUn_KI270364v1	2855
-	chrUn_KI270371v1	2805
-	chrUn_KI270333v1	2699
-	chrUn_KI270374v1	2656
-	chrUn_KI270411v1	2646
-	chrUn_KI270414v1	2489
-	chrUn_KI270510v1	2415
-	chrUn_KI270390v1	2387
-	chrUn_KI270375v1	2378
-	chrUn_KI270420v1	2321
-	chrUn_KI270509v1	2318
-	chrUn_KI270315v1	2276
-	chrUn_KI270302v1	2274
-	chrUn_KI270518v1	2186
-	chrUn_KI270530v1	2168
-	chrUn_KI270304v1	2165
-	chrUn_KI270418v1	2145
-	chrUn_KI270424v1	2140
-	chrUn_KI270417v1	2043
-	chrUn_KI270508v1	1951
-	chrUn_KI270303v1	1942
-	chrUn_KI270381v1	1930
-	chrUn_KI270529v1	1899
-	chrUn_KI270425v1	1884
-	chrUn_KI270396v1	1880
-	chrUn_KI270363v1	1803
-	chrUn_KI270386v1	1788
-	chrUn_KI270465v1	1774
-	chrUn_KI270383v1	1750
-	chrUn_KI270384v1	1658
-	chrUn_KI270330v1	1652
-	chrUn_KI270372v1	1650
-	chrUn_KI270548v1	1599
-	chrUn_KI270580v1	1553
-	chrUn_KI270387v1	1537
-	chrUn_KI270391v1	1484
-	chrUn_KI270305v1	1472
-	chrUn_KI270373v1	1451
-	chrUn_KI270422v1	1445
-	chrUn_KI270316v1	1444
-	chrUn_KI270338v1	1428
-	chrUn_KI270340v1	1428
-	chrUn_KI270583v1	1400
-	chrUn_KI270334v1	1368
-	chrUn_KI270429v1	1361
-	chrUn_KI270393v1	1308
-	chrUn_KI270516v1	1300
-	chrUn_KI270389v1	1298
-	chrUn_KI270466v1	1233
-	chrUn_KI270388v1	1216
-	chrUn_KI270544v1	1202
-	chrUn_KI270310v1	1201
-	chrUn_KI270412v1	1179
-	chrUn_KI270395v1	1143
-	chrUn_KI270376v1	1136
-	chrUn_KI270337v1	1121
-	chrUn_KI270335v1	1048
-	chrUn_KI270378v1	1048
-	chrUn_KI270379v1	1045
-	chrUn_KI270329v1	1040
-	chrUn_KI270419v1	1029
-	chrUn_KI270336v1	1026
-	chrUn_KI270312v1	998
-	chrUn_KI270539v1	993
-	chrUn_KI270385v1	990
-	chrUn_KI270423v1	981
-	chrUn_KI270392v1	971
-	chrUn_KI270394v1	970`
-}
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+var clinvar = require('../dataset/clinvar');
+exports.default = {
+    species: 'human',
+    genomefile: 'genomes/hg38.gz',
+    genedb: {
+        dbfile: 'anno/genes.hg38.db'
+    },
+    termdbs: {
+        msigdb: {
+            label: 'MSigDB',
+            cohort: {
+                db: { file: 'anno/msigdb/db' },
+                termdb: {}
+            }
+        }
+    },
+    proteindomain: {
+        dbfile: 'anno/db/proteindomain.db',
+        statement: 'select data from domain where isoform=? collate nocase'
+    },
+    snp: {
+        bigbedfile: 'anno/dbsnp.hg38.bb'
+    },
+    fimo_motif: {
+        db: 'utils/meme/motif_databases/HUMAN/HOCOMOCOv11_full_HUMAN_mono_meme_format.meme',
+        annotationfile: 'utils/meme/motif_databases/HUMAN/HOCOMOCOv11_full_annotation_HUMAN_mono.tsv'
+    },
+    clinvarVCF: {
+        file: 'hg38/clinvar.hg38.hgvs_short.vep.bcf.gz',
+        infokey: 'CLNSIG',
+        categories: clinvar.clinsig
+    },
+    tracks: [
+        {
+            __isgene: true,
+            translatecoding: true,
+            file: 'anno/refGene.hg38.gz',
+            type: 'bedj',
+            name: 'RefGene',
+            stackheight: 16,
+            stackspace: 1,
+            vpad: 4,
+            color: '#1D591D'
+        },
+        {
+            __isgene: true,
+            file: 'anno/gencode.v41.hg38.gz',
+            translatecoding: true,
+            categories: {
+                coding: { color: '#004D99', label: 'Coding gene' },
+                nonCoding: { color: '#009933', label: 'Noncoding gene' },
+                problem: { color: '#FF3300', label: 'Problem' },
+                pseudo: { color: '#FF00CC', label: 'Pseudogene' }
+            },
+            type: 'bedj',
+            name: 'GENCODE v41',
+            stackheight: 16,
+            stackspace: 1,
+            vpad: 4
+        },
+        {
+            type: 'bedj',
+            name: 'RepeatMasker',
+            stackheight: 14,
+            file: 'anno/rmsk.hg38.gz',
+            onerow: true,
+            categories: {
+                SINE: { color: '#ED8C8E', label: 'SINE' },
+                LINE: { color: '#EDCB8C', label: 'LINE' },
+                LTR: { color: '#E38CED', label: 'LTR' },
+                DNA: { color: '#8C8EED', label: 'DNA transposon' },
+                simple: { color: '#8EB88C', label: 'Simple repeats' },
+                low_complexity: { color: '#ACEBA9', label: 'Low complexity' },
+                satellite: { color: '#B59A84', label: 'Satellite' },
+                RNA: { color: '#9DE0E0', label: 'RNA repeat' },
+                other: { color: '#9BADC2', label: 'Other' },
+                unknown: { color: '#858585', label: 'Unknown' }
+            }
+        }
+    ],
+    defaultcoord: { chr: 'chr17', start: 7666657, stop: 7688274 },
+    hicenzymefragment: [
+        {
+            enzyme: 'DpnII',
+            file: 'anno/hicFragment/hic.DpnII.hg38.gz'
+        },
+        {
+            enzyme: 'EcoRI',
+            file: 'anno/hicFragment/hic.EcoRI.hg38.gz'
+        },
+        {
+            enzyme: 'HindIII',
+            file: 'anno/hicFragment/hic.HindIII.hg38.gz'
+        },
+        {
+            enzyme: 'MboI',
+            file: 'anno/hicFragment/hic.MboI.hg38.gz'
+        },
+        {
+            enzyme: 'NcoI',
+            file: 'anno/hicFragment/hic.NcoI.hg38.gz'
+        }
+    ],
+    majorchr: "chr1\t248956422\nchr2\t242193529\nchr3\t198295559\nchr4\t190214555\nchr5\t181538259\nchr6\t170805979\nchr7\t159345973\nchr8\t145138636\nchr9\t138394717\nchr10\t133797422\nchr11\t135086622\nchr12\t133275309\nchr13\t114364328\nchr14\t107043718\nchr15\t101991189\nchr16\t90338345\nchr17\t83257441\nchr18\t80373285\nchr19\t58617616\nchr20\t64444167\nchr21\t46709983\nchr22\t50818468\nchrX\t156040895\nchrY\t57227415\nchrM\t16569",
+    minorchr: "chr15_KI270905v1_alt\t5161414 chr6_GL000256v2_alt\t4929269 chr6_GL000254v2_alt\t4827813 chr6_GL000251v2_alt\t4795265 chr6_GL000253v2_alt\t4677643\n\tchr6_GL000250v2_alt\t4672374 chr6_GL000255v2_alt\t4606388 chr6_GL000252v2_alt\t4604811 chr17_KI270857v1_alt\t2877074 chr16_KI270853v1_alt\t2659700\n\tchr16_KI270728v1_random\t1872759 chr17_GL000258v2_alt\t1821992 chr5_GL339449v2_alt\t1612928 chr14_KI270847v1_alt\t1511111 chr17_KI270908v1_alt\t1423190\n\tchr14_KI270846v1_alt\t1351393 chr5_KI270897v1_alt\t1144418 chr7_KI270803v1_alt\t1111570 chr19_GL949749v2_alt\t1091841 chr19_KI270938v1_alt\t1066800\n\tchr19_GL949750v2_alt\t1066390 chr19_GL949748v2_alt\t1064304 chr19_GL949751v2_alt\t1002683 chr19_GL949746v1_alt\t987716 chr19_GL949752v1_alt\t987100\n\tchr8_KI270821v1_alt\t985506 chr1_KI270763v1_alt\t911658 chr6_KI270801v1_alt\t870480 chr19_GL949753v2_alt\t796479 chr19_GL949747v2_alt\t729520\n\tchr8_KI270822v1_alt\t624492 chr4_GL000257v2_alt\t586476 chr12_KI270904v1_alt\t572349 chr4_KI270925v1_alt\t555799 chr15_KI270852v1_alt\t478999\n\tchr15_KI270727v1_random\t448248 chr9_KI270823v1_alt\t439082 chr15_KI270850v1_alt\t430880 chr1_KI270759v1_alt\t425601 chr12_GL877876v1_alt\t408271\n\tchrUn_KI270442v1\t392061 chr17_KI270862v1_alt\t391357 chr15_GL383555v2_alt\t388773 chr19_GL383573v1_alt\t385657 chr4_KI270896v1_alt\t378547\n\tchr4_GL383528v1_alt\t376187 chr17_GL383563v3_alt\t375691 chr8_KI270810v1_alt\t374415 chr1_GL383520v2_alt\t366580 chr1_KI270762v1_alt\t354444\n\tchr15_KI270848v1_alt\t327382 chr17_KI270909v1_alt\t325800 chr14_KI270844v1_alt\t322166 chr8_KI270900v1_alt\t318687 chr10_GL383546v1_alt\t309802\n\tchr13_KI270838v1_alt\t306913 chr8_KI270816v1_alt\t305841 chr22_KI270879v1_alt\t304135 chr8_KI270813v1_alt\t300230 chr11_KI270831v1_alt\t296895\n\tchr15_GL383554v1_alt\t296527 chr8_KI270811v1_alt\t292436 chr18_GL383567v1_alt\t289831 chrX_KI270880v1_alt\t284869 chr8_KI270812v1_alt\t282736\n\tchr19_KI270921v1_alt\t282224 chr17_KI270729v1_random\t280839 chr17_JH159146v1_alt\t278131 chrX_KI270913v1_alt\t274009 chr6_KI270798v1_alt\t271782\n\tchr7_KI270808v1_alt\t271455 chr22_KI270876v1_alt\t263666 chr15_KI270851v1_alt\t263054 chr22_KI270875v1_alt\t259914 chr1_KI270766v1_alt\t256271\n\tchr19_KI270882v1_alt\t248807 chr3_KI270778v1_alt\t248252 chr15_KI270849v1_alt\t244917 chr4_KI270786v1_alt\t244096 chr12_KI270835v1_alt\t238139\n\tchr17_KI270858v1_alt\t235827 chr19_KI270867v1_alt\t233762 chr16_KI270855v1_alt\t232857 chr8_KI270926v1_alt\t229282 chr5_GL949742v1_alt\t226852\n\tchr3_KI270780v1_alt\t224108 chr17_GL383565v1_alt\t223995 chr2_KI270774v1_alt\t223625 chr4_KI270790v1_alt\t220246 chr11_KI270927v1_alt\t218612\n\tchr19_KI270932v1_alt\t215732 chr11_KI270903v1_alt\t214625 chr2_KI270894v1_alt\t214158 chr14_GL000225v1_random\t211173 chrUn_KI270743v1\t210658\n\tchr11_KI270832v1_alt\t210133 chr7_KI270805v1_alt\t209988 chr4_GL000008v2_random\t209709 chr7_KI270809v1_alt\t209586 chr19_KI270887v1_alt\t209512\n\tchr4_KI270789v1_alt\t205944 chr3_KI270779v1_alt\t205312 chr19_KI270914v1_alt\t205194 chr19_KI270886v1_alt\t204239 chr11_KI270829v1_alt\t204059\n\tchr14_GL000009v2_random\t201709 chr21_GL383579v2_alt\t201197 chr11_JH159136v1_alt\t200998 chr19_KI270930v1_alt\t200773 chrUn_KI270747v1\t198735\n\tchr18_GL383571v1_alt\t198278\n\tchr19_KI270920v1_alt\t198005\n\tchr6_KI270797v1_alt\t197536\n\tchr3_KI270935v1_alt\t197351\n\tchr17_KI270861v1_alt\t196688\n\tchr15_KI270906v1_alt\t196384\n\tchr5_KI270791v1_alt\t195710\n\tchr14_KI270722v1_random\t194050\n\tchr16_GL383556v1_alt\t192462\n\tchr13_KI270840v1_alt\t191684\n\tchr14_GL000194v1_random\t191469\n\tchr11_JH159137v1_alt\t191409\n\tchr19_KI270917v1_alt\t190932\n\tchr7_KI270899v1_alt\t190869\n\tchr19_KI270923v1_alt\t189352\n\tchr10_KI270825v1_alt\t188315\n\tchr19_GL383576v1_alt\t188024\n\tchr19_KI270922v1_alt\t187935\n\tchrUn_KI270742v1\t186739\n\tchr22_KI270878v1_alt\t186262\n\tchr19_KI270929v1_alt\t186203\n\tchr11_KI270826v1_alt\t186169\n\tchr6_KB021644v2_alt\t185823\n\tchr17_GL000205v2_random\t185591\n\tchr1_KI270765v1_alt\t185285\n\tchr19_KI270916v1_alt\t184516\n\tchr19_KI270890v1_alt\t184499\n\tchr3_KI270784v1_alt\t184404\n\tchr12_GL383551v1_alt\t184319\n\tchr20_KI270870v1_alt\t183433\n\tchrUn_GL000195v1\t182896\n\tchr1_GL383518v1_alt\t182439\n\tchr22_KI270736v1_random\t181920\n\tchr10_KI270824v1_alt\t181496\n\tchr14_KI270845v1_alt\t180703\n\tchr3_GL383526v1_alt\t180671\n\tchr13_KI270839v1_alt\t180306\n\tchr22_KI270733v1_random\t179772\n\tchrUn_GL000224v1\t179693\n\tchr10_GL383545v1_alt\t179254\n\tchrUn_GL000219v1\t179198\n\tchr5_KI270792v1_alt\t179043\n\tchr17_KI270860v1_alt\t178921\n\tchr19_GL000209v2_alt\t177381\n\tchr11_KI270830v1_alt\t177092\n\tchr9_KI270719v1_random\t176845\n\tchrUn_GL000216v2\t176608\n\tchr22_KI270928v1_alt\t176103\n\tchr1_KI270712v1_random\t176043\n\tchr6_KI270800v1_alt\t175808\n\tchr1_KI270706v1_random\t175055\n\tchr2_KI270776v1_alt\t174166\n\tchr18_KI270912v1_alt\t174061\n\tchr3_KI270777v1_alt\t173649\n\tchr5_GL383531v1_alt\t173459\n\tchr3_JH636055v2_alt\t173151\n\tchr14_KI270725v1_random\t172810\n\tchr5_KI270796v1_alt\t172708\n\tchr9_GL383541v1_alt\t171286\n\tchr19_KI270885v1_alt\t171027\n\tchr19_KI270919v1_alt\t170701\n\tchr19_KI270889v1_alt\t170698\n\tchr19_KI270891v1_alt\t170680\n\tchr19_KI270915v1_alt\t170665\n\tchr19_KI270933v1_alt\t170537\n\tchr19_KI270883v1_alt\t170399\n\tchr19_GL383575v2_alt\t170222\n\tchr19_KI270931v1_alt\t170148\n\tchr12_GL383550v2_alt\t169178\n\tchr13_KI270841v1_alt\t169134\n\tchrUn_KI270744v1\t168472\n\tchr18_KI270863v1_alt\t167999\n\tchr18_GL383569v1_alt\t167950\n\tchr12_GL877875v1_alt\t167313\n\tchr21_KI270874v1_alt\t166743\n\tchr3_KI270924v1_alt\t166540\n\tchr1_KI270761v1_alt\t165834\n\tchr3_KI270937v1_alt\t165607\n\tchr22_KI270734v1_random\t165050\n\tchr18_GL383570v1_alt\t164789\n\tchr5_KI270794v1_alt\t164558\n\tchr4_GL383527v1_alt\t164536\n\tchrUn_GL000213v1\t164239\n\tchr3_KI270936v1_alt\t164170\n\tchr3_KI270934v1_alt\t163458\n\tchr9_GL383539v1_alt\t162988\n\tchr3_KI270895v1_alt\t162896\n\tchr22_GL383582v2_alt\t162811\n\tchr3_KI270782v1_alt\t162429\n\tchr1_KI270892v1_alt\t162212\n\tchrUn_GL000220v1\t161802\n\tchr2_KI270767v1_alt\t161578\n\tchr2_KI270715v1_random\t161471\n\tchr2_KI270893v1_alt\t161218\n\tchrUn_GL000218v1\t161147\n\tchr18_GL383572v1_alt\t159547\n\tchr8_KI270817v1_alt\t158983\n\tchr4_KI270788v1_alt\t158965\n\tchrUn_KI270749v1\t158759\n\tchr7_KI270806v1_alt\t158166\n\tchr7_KI270804v1_alt\t157952\n\tchr18_KI270911v1_alt\t157710\n\tchrUn_KI270741v1\t157432\n\tchr17_KI270910v1_alt\t157099\n\tchr19_KI270884v1_alt\t157053\n\tchr19_GL383574v1_alt\t155864\n\tchr19_KI270888v1_alt\t155532\n\tchr3_GL000221v1_random\t155397\n\tchr11_GL383547v1_alt\t154407\n\tchr2_KI270716v1_random\t153799\n\tchr12_GL383553v2_alt\t152874\n\tchr6_KI270799v1_alt\t152148\n\tchr22_KI270731v1_random\t150754\n\tchrUn_KI270751v1\t150742\n\tchrUn_KI270750v1\t148850\n\tchr8_KI270818v1_alt\t145606\n\tchrX_KI270881v1_alt\t144206\n\tchr21_KI270873v1_alt\t143900\n\tchr2_GL383521v1_alt\t143390\n\tchr8_KI270814v1_alt\t141812\n\tchr12_GL383552v1_alt\t138655\n\tchrUn_KI270519v1\t138126\n\tchr2_KI270775v1_alt\t138019\n\tchr17_KI270907v1_alt\t137721\n\tchrUn_GL000214v1\t137718\n\tchr8_KI270901v1_alt\t136959\n\tchr2_KI270770v1_alt\t136240\n\tchr16_KI270854v1_alt\t134193\n\tchr8_KI270819v1_alt\t133535\n\tchr17_GL383564v2_alt\t133151\n\tchr2_KI270772v1_alt\t133041\n\tchr8_KI270815v1_alt\t132244\n\tchr5_KI270795v1_alt\t131892\n\tchr5_KI270898v1_alt\t130957\n\tchr20_GL383577v2_alt\t128386\n\tchr1_KI270708v1_random\t127682\n\tchr7_KI270807v1_alt\t126434\n\tchr5_KI270793v1_alt\t126136\n\tchr6_GL383533v1_alt\t124736\n\tchr2_GL383522v1_alt\t123821\n\tchr19_KI270918v1_alt\t123111\n\tchr12_GL383549v1_alt\t120804\n\tchr2_KI270769v1_alt\t120616\n\tchr4_KI270785v1_alt\t119912\n\tchr12_KI270834v1_alt\t119498\n\tchr7_GL383534v2_alt\t119183\n\tchr20_KI270869v1_alt\t118774\n\tchr21_GL383581v2_alt\t116689\n\tchr3_KI270781v1_alt\t113034\n\tchr17_KI270730v1_random\t112551\n\tchrUn_KI270438v1\t112505\n\tchr4_KI270787v1_alt\t111943\n\tchr18_KI270864v1_alt\t111737\n\tchr2_KI270771v1_alt\t110395\n\tchr1_GL383519v1_alt\t110268\n\tchr2_KI270768v1_alt\t110099\n\tchr1_KI270760v1_alt\t109528\n\tchr3_KI270783v1_alt\t109187\n\tchr17_KI270859v1_alt\t108763\n\tchr11_KI270902v1_alt\t106711\n\tchr18_GL383568v1_alt\t104552\n\tchr22_KI270737v1_random\t103838\n\tchr13_KI270843v1_alt\t103832\n\tchr22_KI270877v1_alt\t101331\n\tchr5_GL383530v1_alt\t101241\n\tchr11_KI270721v1_random\t100316\n\tchr22_KI270738v1_random\t99375\n\tchr22_GL383583v2_alt\t96924\n\tchr2_GL582966v2_alt\t96131\n\tchrUn_KI270748v1\t93321\n\tchrUn_KI270435v1\t92983\n\tchr5_GL000208v1_random\t92689\n\tchrUn_KI270538v1\t91309\n\tchr17_GL383566v1_alt\t90219\n\tchr16_GL383557v1_alt\t89672\n\tchr17_JH159148v1_alt\t88070\n\tchr5_GL383532v1_alt\t82728\n\tchr21_KI270872v1_alt\t82692\n\tchrUn_KI270756v1\t79590\n\tchr6_KI270758v1_alt\t76752\n\tchr12_KI270833v1_alt\t76061\n\tchr6_KI270802v1_alt\t75005\n\tchr21_GL383580v2_alt\t74653\n\tchr22_KB663609v1_alt\t74013\n\tchr22_KI270739v1_random\t73985\n\tchr9_GL383540v1_alt\t71551\n\tchrUn_KI270757v1\t71251\n\tchr2_KI270773v1_alt\t70887\n\tchr17_JH159147v1_alt\t70345\n\tchr11_KI270827v1_alt\t67707\n\tchr1_KI270709v1_random\t66860\n\tchrUn_KI270746v1\t66486\n\tchr16_KI270856v1_alt\t63982\n\tchr21_GL383578v2_alt\t63917\n\tchrUn_KI270753v1\t62944\n\tchr19_KI270868v1_alt\t61734\n\tchr9_GL383542v1_alt\t60032\n\tchr20_KI270871v1_alt\t58661\n\tchr12_KI270836v1_alt\t56134\n\tchr19_KI270865v1_alt\t52969\n\tchr1_KI270764v1_alt\t50258\n\tchrUn_KI270589v1\t44474\n\tchr14_KI270726v1_random\t43739\n\tchr19_KI270866v1_alt\t43156\n\tchr22_KI270735v1_random\t42811\n\tchr1_KI270711v1_random\t42210\n\tchrUn_KI270745v1\t41891\n\tchr1_KI270714v1_random\t41717\n\tchr22_KI270732v1_random\t41543\n\tchr1_KI270713v1_random\t40745\n\tchrUn_KI270754v1\t40191\n\tchr1_KI270710v1_random\t40176\n\tchr12_KI270837v1_alt\t40090\n\tchr9_KI270717v1_random\t40062\n\tchr14_KI270724v1_random\t39555\n\tchr9_KI270720v1_random\t39050\n\tchr14_KI270723v1_random\t38115\n\tchr9_KI270718v1_random\t38054\n\tchrUn_KI270317v1\t37690\n\tchr13_KI270842v1_alt\t37287\n\tchrY_KI270740v1_random\t37240\n\tchrUn_KI270755v1\t36723\n\tchr8_KI270820v1_alt\t36640\n\tchr1_KI270707v1_random\t32032\n\tchrUn_KI270579v1\t31033\n\tchrUn_KI270752v1\t27745\n\tchrUn_KI270512v1\t22689\n\tchrUn_KI270322v1\t21476\n\tchrUn_GL000226v1\t15008\n\tchrUn_KI270311v1\t12399\n\tchrUn_KI270366v1\t8320\n\tchrUn_KI270511v1\t8127\n\tchrUn_KI270448v1\t7992\n\tchrUn_KI270521v1\t7642\n\tchrUn_KI270581v1\t7046\n\tchrUn_KI270582v1\t6504\n\tchrUn_KI270515v1\t6361\n\tchrUn_KI270588v1\t6158\n\tchrUn_KI270591v1\t5796\n\tchrUn_KI270522v1\t5674\n\tchrUn_KI270507v1\t5353\n\tchrUn_KI270590v1\t4685\n\tchrUn_KI270584v1\t4513\n\tchrUn_KI270320v1\t4416\n\tchrUn_KI270382v1\t4215\n\tchrUn_KI270468v1\t4055\n\tchrUn_KI270467v1\t3920\n\tchrUn_KI270362v1\t3530\n\tchrUn_KI270517v1\t3253\n\tchrUn_KI270593v1\t3041\n\tchrUn_KI270528v1\t2983\n\tchrUn_KI270587v1\t2969\n\tchrUn_KI270364v1\t2855\n\tchrUn_KI270371v1\t2805\n\tchrUn_KI270333v1\t2699\n\tchrUn_KI270374v1\t2656\n\tchrUn_KI270411v1\t2646\n\tchrUn_KI270414v1\t2489\n\tchrUn_KI270510v1\t2415\n\tchrUn_KI270390v1\t2387\n\tchrUn_KI270375v1\t2378\n\tchrUn_KI270420v1\t2321\n\tchrUn_KI270509v1\t2318\n\tchrUn_KI270315v1\t2276\n\tchrUn_KI270302v1\t2274\n\tchrUn_KI270518v1\t2186\n\tchrUn_KI270530v1\t2168\n\tchrUn_KI270304v1\t2165\n\tchrUn_KI270418v1\t2145\n\tchrUn_KI270424v1\t2140\n\tchrUn_KI270417v1\t2043\n\tchrUn_KI270508v1\t1951\n\tchrUn_KI270303v1\t1942\n\tchrUn_KI270381v1\t1930\n\tchrUn_KI270529v1\t1899\n\tchrUn_KI270425v1\t1884\n\tchrUn_KI270396v1\t1880\n\tchrUn_KI270363v1\t1803\n\tchrUn_KI270386v1\t1788\n\tchrUn_KI270465v1\t1774\n\tchrUn_KI270383v1\t1750\n\tchrUn_KI270384v1\t1658\n\tchrUn_KI270330v1\t1652\n\tchrUn_KI270372v1\t1650\n\tchrUn_KI270548v1\t1599\n\tchrUn_KI270580v1\t1553\n\tchrUn_KI270387v1\t1537\n\tchrUn_KI270391v1\t1484\n\tchrUn_KI270305v1\t1472\n\tchrUn_KI270373v1\t1451\n\tchrUn_KI270422v1\t1445\n\tchrUn_KI270316v1\t1444\n\tchrUn_KI270338v1\t1428\n\tchrUn_KI270340v1\t1428\n\tchrUn_KI270583v1\t1400\n\tchrUn_KI270334v1\t1368\n\tchrUn_KI270429v1\t1361\n\tchrUn_KI270393v1\t1308\n\tchrUn_KI270516v1\t1300\n\tchrUn_KI270389v1\t1298\n\tchrUn_KI270466v1\t1233\n\tchrUn_KI270388v1\t1216\n\tchrUn_KI270544v1\t1202\n\tchrUn_KI270310v1\t1201\n\tchrUn_KI270412v1\t1179\n\tchrUn_KI270395v1\t1143\n\tchrUn_KI270376v1\t1136\n\tchrUn_KI270337v1\t1121\n\tchrUn_KI270335v1\t1048\n\tchrUn_KI270378v1\t1048\n\tchrUn_KI270379v1\t1045\n\tchrUn_KI270329v1\t1040\n\tchrUn_KI270419v1\t1029\n\tchrUn_KI270336v1\t1026\n\tchrUn_KI270312v1\t998\n\tchrUn_KI270539v1\t993\n\tchrUn_KI270385v1\t990\n\tchrUn_KI270423v1\t981\n\tchrUn_KI270392v1\t971\n\tchrUn_KI270394v1\t970"
+};