@sjcrh/proteinpaint-server 2.142.0 → 2.143.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (65) hide show
  1. package/dataset/protected.test.js +1 -2
  2. package/dataset/termdb.test.js +3 -2
  3. package/package.json +9 -8
  4. package/routes/aiProjectAdmin.js +46 -60
  5. package/routes/aiProjectSelectedWSImages.js +161 -0
  6. package/routes/brainImaging.js +9 -18
  7. package/routes/brainImagingSamples.js +2 -4
  8. package/routes/burden.js +13 -26
  9. package/routes/correlationVolcano.js +18 -36
  10. package/routes/dataset.js +6 -12
  11. package/routes/deleteWSIAnnotation.js +75 -0
  12. package/routes/dsdata.js +7 -14
  13. package/routes/dzimages.js +4 -8
  14. package/routes/gdc.grin2.list.js +13 -26
  15. package/routes/gdc.grin2.run.js +3 -6
  16. package/routes/gdc.maf.js +8 -16
  17. package/routes/gdc.mafBuild.js +14 -28
  18. package/routes/gene2canonicalisoform.js +4 -8
  19. package/routes/genelookup.js +2 -4
  20. package/routes/genesetEnrichment.js +6 -12
  21. package/routes/genesetOverrepresentation.js +1 -2
  22. package/routes/genomes.js +1 -2
  23. package/routes/grin2.js +13 -17
  24. package/routes/healthcheck.js +3 -6
  25. package/routes/hicdata.js +4 -8
  26. package/routes/hicgenome.js +4 -8
  27. package/routes/hicstat.js +2 -4
  28. package/routes/img.js +1 -2
  29. package/routes/isoformlst.js +6 -12
  30. package/routes/ntseq.js +4 -8
  31. package/routes/pdomain.js +5 -10
  32. package/routes/sampledzimages.js +2 -4
  33. package/routes/samplewsimages.js +3 -67
  34. package/routes/saveWSIAnnotation.js +100 -0
  35. package/routes/snp.js +9 -18
  36. package/routes/termdb.DE.js +23 -46
  37. package/routes/termdb.boxplot.js +84 -84
  38. package/routes/termdb.categories.js +9 -18
  39. package/routes/termdb.cluster.js +23 -46
  40. package/routes/termdb.cohort.summary.js +3 -6
  41. package/routes/termdb.cohorts.js +4 -8
  42. package/routes/termdb.config.js +32 -64
  43. package/routes/termdb.descrstats.js +6 -12
  44. package/routes/termdb.filterTermValues.js +4 -8
  45. package/routes/termdb.numericcategories.js +5 -10
  46. package/routes/termdb.percentile.js +6 -12
  47. package/routes/termdb.profileFormScores.js +12 -24
  48. package/routes/termdb.profileScores.js +7 -14
  49. package/routes/termdb.rootterm.js +4 -8
  50. package/routes/termdb.sampleImages.js +4 -8
  51. package/routes/termdb.singleSampleMutation.js +9 -18
  52. package/routes/termdb.singlecellDEgenes.js +4 -8
  53. package/routes/termdb.singlecellData.js +4 -8
  54. package/routes/termdb.singlecellSamples.js +28 -56
  55. package/routes/termdb.termchildren.js +5 -10
  56. package/routes/termdb.termsbyids.js +4 -8
  57. package/routes/termdb.topMutatedGenes.js +15 -30
  58. package/routes/termdb.topTermsByType.js +9 -18
  59. package/routes/termdb.topVariablyExpressedGenes.js +13 -26
  60. package/routes/termdb.violin.js +124 -135
  61. package/routes/tileserver.js +14 -15
  62. package/routes/wsimages.js +42 -46
  63. package/routes/wsisamples.js +3 -6
  64. package/src/app.js +4345 -6708
  65. package/routes/sampleWsiAiApi.js +0 -33
package/routes/sampleWsiAiApi.js DELETED
@@ -1,33 +0,0 @@
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- import { sampleWsiAiApiPayload } from "#types/checkers";
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- const routePath = "sampleWsiAiApi";
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- const api = {
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- endpoint: `${routePath}`,
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- methods: {
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- get: {
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- ...sampleWsiAiApiPayload,
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- init
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- },
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- post: {
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- ...sampleWsiAiApiPayload,
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- init
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- }
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- }
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- };
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- function init() {
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- return async (req, res) => {
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- try {
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- const request = req.query;
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- console.log("sample wsi api request:", request);
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- res.status(200).send({ testKey: "completed" });
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- } catch (e) {
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- console.warn(e);
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- res.status(500).send({
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- status: "error",
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- error: e.message || e
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- });
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- }
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- };
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- }
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- export {
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- api
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- };