@sjcrh/proteinpaint-server 2.138.1 → 2.138.2

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package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@sjcrh/proteinpaint-server",
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- "version": "2.138.1",
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+ "version": "2.138.2",
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  "type": "module",
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  "description": "a genomics visualization tool for exploring a cohort's genotype and phenotype data",
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  "main": "src/app.js",
@@ -28,7 +28,29 @@ function init({ genomes }) {
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  }
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  };
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  }
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- function getList(samplesPerFilter, filtersData, tw) {
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+ async function getFilters(query, ds, res) {
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+ if (!query.filterByUserSites)
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+ authApi.mayAdjustFilter(query, ds, query.terms);
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+ try {
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+ const samplesPerFilter = await getSamplesPerFilter(query, ds);
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+ const filtersData = await getData(
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+ {
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+ terms: query.terms,
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+ __protected__: query.__protected__
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+ },
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+ ds
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+ );
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+ const tw2List = {};
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+ for (const tw of query.terms) {
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+ tw2List[tw.term.id] = getList(samplesPerFilter, filtersData, tw, query.showAll);
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+ }
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+ res.send({ ...tw2List });
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+ } catch (e) {
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+ console.log(e);
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+ res.send({ error: e.message || e });
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+ }
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+ }
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+ function getList(samplesPerFilter, filtersData, tw, showAll) {
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  const values = Object.values(tw.term.values);
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  values.sort((v1, v2) => v1.label.localeCompare(v2.label));
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  const twSamples = samplesPerFilter[tw.term.id];
@@ -42,28 +64,14 @@ function getList(samplesPerFilter, filtersData, tw) {
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  for (const value of values) {
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  const label = value.label.replace(/["']/g, "");
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  const disabled = !sampleValues.includes(value.key || value.label);
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+ if (!showAll && disabled)
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+ continue;
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  filteredValues.push({ value: value.key || value.label, label, disabled });
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  }
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  filteredValues.unshift({ label: "", value: "" });
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  filteredValues.sort((a, b) => a.label.localeCompare(b.label));
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  return filteredValues;
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  }
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- async function getFilters(query, ds, res) {
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- if (!query.filterByUserSites)
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- authApi.mayAdjustFilter(query, ds, query.terms);
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- try {
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- const samplesPerFilter = await getSamplesPerFilter(query, ds);
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- const filtersData = await getData({ terms: query.terms, __protected__: query.__protected__ }, ds);
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- const tw2List = {};
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- for (const tw of query.terms) {
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- tw2List[tw.term.id] = getList(samplesPerFilter, filtersData, tw);
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- }
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- res.send({ ...tw2List });
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- } catch (e) {
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- console.log(e);
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- res.send({ error: e.message || e });
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- }
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- }
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  export {
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  api
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  };