@sjcrh/proteinpaint-server 2.133.4 → 2.134.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/genome/hg38.js +0 -1
- package/package.json +3 -3
- package/routes/{profileFilters.js → filterTermValues.js} +7 -5
- package/routes/wsimages.js +2 -3
- package/src/app.js +20 -20
package/genome/hg38.js
CHANGED
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@@ -61,7 +61,6 @@ var hg38_default = {
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categories: {
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coding: { color: "#004D99", label: "Coding gene" },
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nonCoding: { color: "#008833", label: "Noncoding gene" },
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-
problem: { color: "#CC3300", label: "Problem" },
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pseudo: { color: "#CC00CC", label: "Pseudogene" }
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},
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type: "bedj",
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@sjcrh/proteinpaint-server",
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-
"version": "2.
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+
"version": "2.134.0",
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"type": "module",
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"description": "a genomics visualization tool for exploring a cohort's genotype and phenotype data",
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"main": "src/app.js",
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@@ -64,8 +64,8 @@
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"@sjcrh/proteinpaint-python": "2.133.0",
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"@sjcrh/proteinpaint-r": "2.130.0",
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"@sjcrh/proteinpaint-rust": "2.133.0",
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-
"@sjcrh/proteinpaint-shared": "2.
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-
"@sjcrh/proteinpaint-types": "2.
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+
"@sjcrh/proteinpaint-shared": "2.134.0",
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"@sjcrh/proteinpaint-types": "2.134.0",
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"@types/express": "^5.0.0",
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"@types/express-session": "^1.18.1",
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"better-sqlite3": "^9.4.1",
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@@ -1,14 +1,14 @@
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1
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-
import {
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+
import { FilterTermValuesPayload } from "#types/checkers";
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import { getData, getSamplesPerFilter } from "../src/termdb.matrix.js";
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const api = {
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endpoint: "
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endpoint: "filterTermValues",
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methods: {
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get: {
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-
...
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+
...FilterTermValuesPayload,
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init
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},
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post: {
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-
...
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+
...FilterTermValuesPayload,
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init
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}
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}
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@@ -38,9 +38,11 @@ function getList(samplesPerFilter, filtersData, tw) {
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const sampleValues = Array.from(new Set(data.map((sample) => sample[tw.$id]?.value)));
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for (const value of values) {
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value.value = value.label;
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-
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const label = value.label;
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value.disabled = !sampleValues.includes(label);
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}
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values.unshift({ label: "", value: "" });
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values.sort((a, b) => a.label.localeCompare(b.label));
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return values;
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}
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async function getFilters(query, ds, genome, res) {
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package/routes/wsimages.js
CHANGED
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@@ -3,7 +3,6 @@ import qs from "qs";
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import path from "path";
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import { CookieJar } from "tough-cookie";
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import { promisify } from "util";
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-
import { PredictionOverlayType } from "#types";
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import { wsImagesPayload } from "#types/checkers";
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import SessionManager from "../src/wsisessions/SessionManager.ts";
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import { ShardManager } from "#src/sharding/ShardManager.ts";
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@@ -121,7 +120,7 @@ async function getSessionId(ds, sampleId, cookieJar, getCookieString, setCookie,
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}).json();
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const overlay = {
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layerNumber,
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predictionOverlayType:
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predictionOverlayType: "Prediction"
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};
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overlays.push(overlay);
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}
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@@ -148,7 +147,7 @@ async function getSessionId(ds, sampleId, cookieJar, getCookieString, setCookie,
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}).json();
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const overlay = {
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layerNumber,
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predictionOverlayType:
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predictionOverlayType: "Uncertainty"
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};
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overlays.push(overlay);
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}
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