@sjcrh/proteinpaint-server 2.120.1 → 2.121.0
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- package/dataset/termdb.test.js +4 -6
- package/package.json +5 -5
- package/routes/burden.js +0 -4
- package/routes/termdb.topMutatedGenes.js +1 -1
- package/routes/termdb.violin.js +0 -1
- package/src/app.js +8 -8
- package/utils/edge.R +7 -0
package/utils/edge.R
CHANGED
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@@ -107,6 +107,13 @@ filter_using_cpm_time <- system.time({
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107
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})
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#cat("Filter using cpm time: ", as.difftime(filter_using_cpm_time, units = "secs")[3], " seconds\n")
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+
if (dim(y)[1]==0) { # Its possible after filtering there might not be any genes left in the matrix, in such a case the R code must exit gracefully with an error.
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stop("Number of genes after filtering = 0, cannot proceed any further")
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}
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if (dim(y)[2]==0) { # Its possible after filtering there might not be any samples left in the matrix, in such a case the R code must exit gracefully with an error.
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stop("Number of samples after filtering = 0, cannot proceed any further")
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}
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+
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# Saving MDS plot image
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if (dim(read_counts)[1] * dim(read_counts)[2] < as.numeric(input$mds_cutoff)) { # If the dimensions of the read counts matrix is below this threshold, only then the mds image will be generated as its very compute intensive
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