@sjcrh/proteinpaint-server 2.119.0-0 → 2.120.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dataset/termdb.test.js +5 -9
- package/package.json +5 -5
- package/src/app.js +6 -6
- package/utils/edge.R +0 -7
package/dataset/termdb.test.js
CHANGED
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@@ -155,11 +155,11 @@ function termdb_test_default() {
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file: "files/hg38/TermdbTest/TermdbTest_CNV_gene.gz"
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},
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/*
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-
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-
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-
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-
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-
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+
on the fly cnv calls from gene body probe signals are no longer used
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probe2cnv:{
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file: 'files/hg19/pnet/PNET.probesignals.gz'
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}
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*/
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singleSampleMutation: {
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src: "native",
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sample_id_key: "sample_id",
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@@ -197,10 +197,6 @@ function termdb_test_default() {
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topVariablyExpressedGenes: {
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src: "native"
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},
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-
rnaseqGeneCount: {
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storage_type: "HDF5",
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file: "files/hg38/TermdbTest/TermdbTest.geneCounts.h5"
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},
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WSImages: {
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type: "H&E",
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imageBySampleFolder: "files/hg38/TermdbTest/wsimages"
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@sjcrh/proteinpaint-server",
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-
"version": "2.
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"version": "2.120.0",
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"type": "module",
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"description": "a genomics visualization tool for exploring a cohort's genotype and phenotype data",
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"main": "src/app.js",
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@@ -65,11 +65,11 @@
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"typescript": "^5.6.3"
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},
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"dependencies": {
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-
"@sjcrh/augen": "2.119.0
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"@sjcrh/augen": "2.119.0",
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"@sjcrh/proteinpaint-python": "2.118.0",
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"@sjcrh/proteinpaint-rust": "2.
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"@sjcrh/proteinpaint-shared": "2.119.0
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"@sjcrh/proteinpaint-types": "2.119.0
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"@sjcrh/proteinpaint-rust": "2.120.0",
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"@sjcrh/proteinpaint-shared": "2.119.0",
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"@sjcrh/proteinpaint-types": "2.119.0",
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"@types/express": "^5.0.0",
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"@types/express-session": "^1.18.1",
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"better-sqlite3": "^9.4.1",
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