@sjcrh/proteinpaint-front 2.82.0 → 2.84.0

package/init.js

@@ -8,6 +8,8 @@ const { execSync } = require('child_process')
 
 let URLPATH = process.argv[2] || '.'
 if (URLPATH.endsWith('/')) URLPATH = URLPATH.slice(0, -1)
+const publicBinOnly = process.argv.includes('--publicBinOnly')
+
 const CWD = process.cwd()
 
 console.log('CWD', CWD)
@@ -16,20 +18,22 @@ try {
 		console.log(`making a public directory at ${CWD}`)
 		fs.mkdirSync(`${CWD}/public`)
 	}
-	if (!fs.existsSync(`${CWD}/public/index.html`)) {
-		console.log(`creating a public/index.html file`)
-		fs.copyFileSync(path.join(__dirname, './public/index.html'), `${CWD}/public/index.html`)
-	}
 	if (fs.existsSync(`${CWD}/public/bin`)) {
 		console.log(`removing the old public/bin at ${CWD}`)
 		// should update as part of v16 upgrade
 		fs.rmdirSync(`${CWD}/public/bin`, { recursive: true, force: true }, () => {})
 	}
-	if (!fs.existsSync(`${CWD}/public/cards`)) {
-		console.log(`Copying cards into public/cards folder`)
-		execSync(`cp -r ${CWD}/node_modules/@sjcrh/proteinpaint-front/public/cards ${CWD}/public/cards`, {
-			stdio: 'inherit'
-		})
+	if (!publicBinOnly) {
+		if (!fs.existsSync(`${CWD}/public/index.html`)) {
+			console.log(`creating a public/index.html file`)
+			fs.copyFileSync(path.join(__dirname, './public/index.html'), `${CWD}/public/index.html`)
+		}
+		if (!fs.existsSync(`${CWD}/public/cards`)) {
+			console.log(`Copying cards into public/cards folder`)
+			execSync(`cp -r ${CWD}/node_modules/@sjcrh/proteinpaint-front/public/cards ${CWD}/public/cards`, {
+				stdio: 'inherit'
+			})
+		}
 	}
 	const tar = ps.spawnSync('tar', [`-xzf`, `${__dirname}/bundles.tgz`, `-C`, `${CWD}`], { encoding: 'utf8' })
 	if (tar.stderr) throw tar.stderr

package/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "@sjcrh/proteinpaint-front",
-	"version": "2.82.0",
+	"version": "2.84.0",
 	"browser": "src/app.js",
 	"main": "src/index.js",
 	"bin": "init.js",
@@ -12,7 +12,7 @@
 		"test:integration": "echo 'TODO: front integration tests'"
 	},
 	"devDependencies": {
-		"@sjcrh/proteinpaint-client": "2.82.0",
+		"@sjcrh/proteinpaint-client": "2.84.0",
 		"webpack": "^5.76.0",
 		"webpack-cli": "^4.9.2",
 		"webpack-node-externals": "^3.0.0",

package/public/cards/arc.json

@@ -30,5 +30,6 @@
             "name": "Documentation",
             "link": "https://github.com/stjude/proteinpaint/wiki/Interaction-Tracks:-Hi%E2%80%90C-and-Arc"
         }
-    ]
+    ],
+    "citation_id": 1007
 }

package/public/cards/citations.json

@@ -57,6 +57,16 @@
             "pmid": "35982322",
             "pmidURL": "https://pubmed.ncbi.nlm.nih.gov/35982322/",
             "doi": "https://doi.org/10.1007/s00401-022-02484-7"
+        },
+        {
+            "id": 1007,
+            "title": "ppHiC: Interactive exploration of Hi-C results on the ProteinPaint web portal",
+            "appHeaderTitle":"ppHiC: Zhou X <em>et al</em>",
+            "year": "2024",
+            "journal": "Computational and Structural Biotechnology Journal",
+            "pmid": "39430404",
+            "pmidURL": "https://pubmed.ncbi.nlm.nih.gov/39430404/",
+            "doi": "https://doi.org/10.1016/j.csbj.2024.09.020"
         }
     ]
 }

package/public/cards/hic.json

@@ -148,5 +148,6 @@
             "name": "Documentation",
             "link": "https://github.com/stjude/proteinpaint/wiki/Interaction-Tracks:-Hi%E2%80%90C-and-Arc"
         }
-    ]
+    ],
+    "citation_id": 1007
 }