@sjcrh/proteinpaint-front 2.81.5 → 2.83.0

package/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "@sjcrh/proteinpaint-front",
-	"version": "2.81.5",
+	"version": "2.83.0",
 	"browser": "src/app.js",
 	"main": "src/index.js",
 	"bin": "init.js",
@@ -12,7 +12,7 @@
 		"test:integration": "echo 'TODO: front integration tests'"
 	},
 	"devDependencies": {
-		"@sjcrh/proteinpaint-client": "2.81.5",
+		"@sjcrh/proteinpaint-client": "2.83.0",
 		"webpack": "^5.76.0",
 		"webpack-cli": "^4.9.2",
 		"webpack-node-externals": "^3.0.0",

package/public/cards/arc.json

@@ -30,5 +30,6 @@
             "name": "Documentation",
             "link": "https://github.com/stjude/proteinpaint/wiki/Interaction-Tracks:-Hi%E2%80%90C-and-Arc"
         }
-    ]
+    ],
+    "citation_id": 1007
 }

package/public/cards/citations.json

@@ -57,6 +57,16 @@
             "pmid": "35982322",
             "pmidURL": "https://pubmed.ncbi.nlm.nih.gov/35982322/",
             "doi": "https://doi.org/10.1007/s00401-022-02484-7"
+        },
+        {
+            "id": 1007,
+            "title": "ppHiC: Interactive exploration of Hi-C results on the ProteinPaint web portal",
+            "appHeaderTitle":"ppHiC: Zhou X <em>et al</em>",
+            "year": "2024",
+            "journal": "Computational and Structural Biotechnology Journal",
+            "pmid": "39430404",
+            "pmidURL": "https://pubmed.ncbi.nlm.nih.gov/39430404/",
+            "doi": "https://doi.org/10.1016/j.csbj.2024.09.020"
         }
     ]
 }

package/public/cards/hic.json

@@ -148,5 +148,6 @@
             "name": "Documentation",
             "link": "https://github.com/stjude/proteinpaint/wiki/Interaction-Tracks:-Hi%E2%80%90C-and-Arc"
         }
-    ]
+    ],
+    "citation_id": 1007
 }

package/public/cards/index.json

@@ -221,6 +221,7 @@
             "description": "ProteinPaint arguments applicable to any track",
             "image": "https://proteinpaint.stjude.org/ppdemo/images/code-square.png",
             "sandboxJson": "tkFeatures",
+            "ribbon": { "text": "updated", "expireDate": "2024-12-01" },
             "searchterms": []
         },
         {

package/public/cards/tkFeatures.json

@@ -87,6 +87,39 @@
             "testSpec": {
                 "expected": {"image": 2}
             }
+        },
+        {
+            "label": "Custom mutation colors, labels, and descriptions",
+            "message": "Customize the appearance of mutations with the <span style='font-family: Courier; opacity: 0.6;'>mclassOverride</span> argument. This argument allows you to define custom mutation classes with unique colors, labels, and descriptions. Click on the Documentation button to see the learn more from the ProteinPaint wiki.",
+            "runargs": {
+                "parseurl": true,
+                "nobox": 1,
+                "noheader": 1,
+                "genome": "hg19",
+                "gene": "TP53",
+                "dataset": "CIViC",
+                "mclassOverride": {
+                    "className": "My Mutation Classes",
+                    "classes": {
+                        "M": {
+                            "color": "red",
+                            "label": "Custom mutation label",
+                            "desc": "Custom description about this mutation"
+                        }
+                    }
+                   
+                }
+            },
+            "buttons":[
+                {
+                    "name":"All Attributes Documentation",
+                    "link": "https://github.com/stjude/proteinpaint/wiki/Tracks#attributes-applicable-to-all-track-types"
+                }
+            ],
+            "testSpec": {
+                "expected": { "rect": 1, "circle": 10 }
+            }
         }
-    ]
+    ],
+    "ribbonMessage": "See our newest example about customizing the appearance of mutations with the <span style='font-family: Courier; opacity: 0.6;'>mclassOverride</span> argument. Click on 'Custom mutation colors, labels, and descriptions' to learn more."
 }