@sjcrh/proteinpaint-front 2.67.1-0 → 2.67.1

package/package.json

@@ -1,6 +1,6 @@
 {
 	"name": "@sjcrh/proteinpaint-front",
-	"version": "2.67.1-0",
+	"version": "2.67.1",
 	"browser": "src/app.js",
 	"main": "src/index.js",
 	"bin": "init.js",
@@ -12,7 +12,7 @@
 		"test:integration": "echo 'TODO: front integration tests'"
 	},
 	"devDependencies": {
-		"@sjcrh/proteinpaint-client": "2.67.1-0",
+		"@sjcrh/proteinpaint-client": "2.67.1",
 		"webpack": "^5.76.0",
 		"webpack-cli": "^4.9.2",
 		"webpack-node-externals": "^3.0.0",

package/public/cards/index.json

@@ -321,6 +321,7 @@
             "description": "Single-cell omics viewer",
             "image": "https://proteinpaint.stjude.org/ppdemo/images/singlecell-square.png",
             "sandboxJson": "singlecell",
+            "ribbon": { "text": "updated", "expireDate": "2024-08-15" },
             "searchterms": ["tsne", "gene expression", "multi-gene heatmap", "violin plot", "box plot", "umap"]
         },
         {

package/public/cards/nciGdcBtn.json

@@ -1,7 +1,7 @@
 {
     "button": {
         "name": "NCI GDC",
-        "intro": "The NCI's Genomic Data Commmons <a href='https://gdc.cancer.gov/about-gdc' target='GDC homepage'>(GDC)</a> coagulates data from NCI-supported programs, such as TCGA and TARGET.",
+        "intro": "The NCI's Genomic Data Commmons <a href='https://gdc.cancer.gov/about-gdc' target='GDC homepage'>(GDC)</a> is a repository of harmonized datasets of large cancer cohorts. Following applications allow to access and visualize GDC datasets via on-the-fly query to the GDC API.<br><p style='margin: 10px 20px 0px;'><ul style='margin: 5px 15px;'><li><a href='/?appcard=gdcbam' target='GDC lollipop'>BAM slicing</a></li><li><a href='/?appcard=lollipop' target='GDC lollipop'>Coding mutation lollipop plot</a> (or use gene search box below)</li><li><a href='/?appcard=singlecell' target='GDC lollipop'>Single cell RNA-seq</a></li></ul></p>",
         "searchBar": "gene",
         "availableGenomes": ["hg38"],
         "dsURLparam": "mds3=GDC",
@@ -18,4 +18,4 @@
             ]
         }
     }
-}
+}

package/public/cards/singlecell.json

@@ -1,25 +1,27 @@
 {
     "ppcalls": [
-        {
-            "download": "https://proteinpaint.stjude.org/ppdemo/hg19/singlecell/singlecellDemoData.tar.gz",
-            "urlparam": "?genome=hg19&singlecell=proteinpaint_demo/hg19/singlecell/singlecell.json",
-            "jsonpath": "proteinpaint_demo/hg19/singlecell/singlecell.json",
+{
+            "label": "GDC datasets",
+            "urlparam": "?noheader=1&mass={%22genome%22:%22hg38%22,%22dslabel%22:%22GDC%22,%22nav%22:{%22header_mode%22:%22hidden%22},%22plots%22:[{%22chartType%22:%22singleCellPlot%22}]}",
             "runargs": {
-                "noheader": 1,
-                "singlecell": {
-                    "genome": "hg19",
-                    "jsonfile":"proteinpaint_demo/hg19/singlecell/singlecell.json"
+                "noheader": true,
+                "nobox": true,
+                "mass": {
+                    "state": {
+                        "genome": "hg38",
+                        "dslabel": "GDC",
+                        "nav": {
+                            "header_mode": "hidden"
+                        },
+                        "plots": [
+                            {
+                                "chartType": "singleCellPlot"
+                            }
+                        ]
+                    }
                 }
             },
-            "testSpec": {
-                "expected": {"canvas": 1 }
-            }
-        }
-    ],
-    "buttons": [
-        {
-            "name": "Documentation",
-            "link": "https://docs.google.com/document/d/1YVxw2aPru6bAlTzUfE9GAQAvzbiBiqJiBR1X-g5ZBLI/edit"
+            "testSpec": { "expected": { "table": 1, "svg": 2 } }
         }
     ]
 }