@sjcrh/proteinpaint-front 2.59.0 → 2.61.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/bundles.tgz +0 -0
- package/package.json +2 -2
- package/public/cards/hic.json +74 -2
- package/public/cards/index.json +1 -1
package/bundles.tgz
CHANGED
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Binary file
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@sjcrh/proteinpaint-front",
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"version": "2.
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"version": "2.61.0",
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"main": "src/index.js",
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"bin": "init.js",
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"scripts": {
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@@ -11,7 +11,7 @@
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"test:integration": "echo 'TODO: front integration tests'"
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},
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"devDependencies": {
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"@sjcrh/proteinpaint-client": "2.
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"@sjcrh/proteinpaint-client": "2.61.0",
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"webpack": "^5.76.0",
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"webpack-cli": "^4.9.2",
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"webpack-node-externals": "^3.0.0",
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package/public/cards/hic.json
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@@ -1,5 +1,5 @@
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{
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"ribbonMessage": "
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"ribbonMessage": "We're excited to show off our improved plots of Hi-C data! See the new examples for the whole genome, chromosome pair, and detail view in the tabs below. Please see the updated documentation by clicking on the below for more information.",
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"ppcalls": [
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{
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"label": "Hi-C",
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@@ -69,12 +69,84 @@
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"image": 1
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}
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}
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},
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{
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"label": "Whole genome",
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"message": "Click on any chromosome pair to see the Hi-C data for that pair.",
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"runargs": {
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"parseurl": true,
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"noheader": true,
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"nobox": 1,
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"hic": {
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"genome":"hg19",
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"file": "proteinpaint_demo/hg19/hic/hic_demo.hic",
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"enzyme": "MboI"
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}
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},
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"testSpec": {
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"expected": {
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"svg": 1
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}
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}
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},
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{
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"label": "Chromosome pair",
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"message": "Click anywhere within the plot to launch a detail view of the select region.",
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"runargs": {
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"parseurl": true,
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"noheader": true,
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"nobox": 1,
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"hic": {
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"genome":"hg19",
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"file": "proteinpaint_demo/hg19/hic/hic_demo.hic",
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"enzyme": "MboI",
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"position1": "chr17",
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"position2": "chr1",
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"state" : {
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"chrpair": {
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"nmeth": "VC",
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"matrixType": "log(oe)"
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}
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}
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}
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},
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"testSpec": {
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"expected": {
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"svg": 1
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}
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}
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},
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{
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"label": "Detail",
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"runargs": {
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"parseurl": true,
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"noheader": true,
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"nobox": 1,
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"hic": {
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"genome":"hg19",
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"file": "proteinpaint_demo/hg19/hic/hic_demo.hic",
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"enzyme": "MboI",
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"position1": "chr2:182001302-202001302",
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"position2": "chr1:7626953-27626953",
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"state" : {
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"detail": {
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"nmeth": "VC",
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"matrixType": "observed"
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}
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}
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}
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},
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"testSpec": {
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"expected": {
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"svg": 1
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}
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}
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}
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],
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"buttons": [
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{
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"name": "Documentation",
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"link": "https://github.com/stjude/proteinpaint/wiki/Hi%E2%80%90C"
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"link": "https://github.com/stjude/proteinpaint/wiki/Interaction-Tracks:-Hi%E2%80%90C-and-Arc"
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}
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]
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}
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package/public/cards/index.json
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@@ -107,7 +107,7 @@
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"section": "tracks",
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"description": "Chromatin interaction at a locus",
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"image": "https://proteinpaint.stjude.org/ppdemo/images/hic-square.png",
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"ribbon": { "text": "updated", "expireDate": "
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"ribbon": { "text": "updated", "expireDate": "2024-06-01" },
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"sandboxJson": "hic",
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"searchterms": ["hic", "hicstraw", "chromatin interaction", "conformation"]
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},
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