@sjcrh/proteinpaint-front 2.146.4-0 → 2.147.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/bundles.tgz CHANGED
Binary file
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@sjcrh/proteinpaint-front",
3
- "version": "2.146.4-0",
3
+ "version": "2.147.0",
4
4
  "browser": "src/app.js",
5
5
  "main": "src/index.js",
6
6
  "bin": "init.js",
@@ -12,7 +12,7 @@
12
12
  "test:integration": "echo 'TODO: front integration tests'"
13
13
  },
14
14
  "devDependencies": {
15
- "@sjcrh/proteinpaint-client": "2.146.4-0",
15
+ "@sjcrh/proteinpaint-client": "2.147.0",
16
16
  "webpack": "^5.76.0",
17
17
  "webpack-cli": "^4.9.2",
18
18
  "webpack-node-externals": "^3.0.0",
@@ -1,7 +1,7 @@
1
1
  {
2
2
  "ppcalls": [
3
3
  {
4
- "label": "GDC API (GENCODE)",
4
+ "label": "GDC",
5
5
  "message": "To view a different gene from the GDC dataset: <ul><li>Scroll to the top of the page. Select 'human hg38' from the dropdown menu in the header.</li><li>Start typing the gene into the search bar. A vertical menu of gene options will appear. Click the appropriate option or hit enter.</li><li>The protein view of the gene will appear. Click on <div class='sja_opaque8' style='display: inline-block; color: black; padding: 1px 2px; border: solid 1px #545454; font-size: .9em;'>GDC</div> in the toolbar.</li></ul>",
6
6
  "urlparam": "?genome=hg38&gene=ENST00000407796&mds3=GDC",
7
7
  "runargs": {
@@ -22,28 +22,6 @@
22
22
  }
23
23
  }
24
24
  },
25
- {
26
- "label": "GDC API (RefSeq)",
27
- "message": "To view a different gene from the GDC dataset: <ul><li>Scroll to the top of the page. Select 'human hg38' from the dropdown menu in the header.</li><li>Start typing the gene into the search bar. A vertical menu of gene options will appear. Click the appropriate option or hit enter.</li><li>The protein view of the gene will appear. Click on <div class='sja_opaque8' style='display: inline-block; color: black; padding: 1px 2px; border: solid 1px #545454; font-size: .9em;'>GDC</div> in the toolbar.</li></ul>",
28
- "urlparam": "?genome=hg38&gene=NM_005163&mds3=GDC",
29
- "runargs": {
30
- "gene": "NM_005163",
31
- "nobox": 1,
32
- "noheader": 1,
33
- "genome": "hg38",
34
- "tracks": [
35
- {
36
- "type": "mds3",
37
- "dslabel": "GDC"
38
- }
39
- ]
40
- },
41
- "testSpec": {
42
- "expected": {
43
- "circle": 10
44
- }
45
- }
46
- },
47
25
  {
48
26
  "label": "GDC CNV",
49
27
  "runargs": {
@@ -87,7 +65,18 @@
87
65
  "class": "M",
88
66
  "dt": 1,
89
67
  "ref": "G",
90
- "alt": "C"
68
+ "alt": "C",
69
+ "info":{"Pathogenicity":"P"}
70
+ },
71
+ {
72
+ "chr": "chr9",
73
+ "pos": 37002725,
74
+ "mname": "A175R",
75
+ "class": "M",
76
+ "dt": 1,
77
+ "ref": "G",
78
+ "alt": "C",
79
+ "info":{"Pathogenicity":"LP"}
91
80
  },
92
81
  {
93
82
  "gene1": "PAX5",
@@ -1294,4 +1283,4 @@
1294
1283
  ],
1295
1284
  "ribbonMessage": "Please see our newest examples for displaying cnv data: GDC CNV and Custom CNV and SNV Data.",
1296
1285
  "citation_id": 1001
1297
- }
1286
+ }