@sjcrh/proteinpaint-front 2.139.0 → 2.139.1

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Files changed (3) hide show
  1. package/bundles.tgz +0 -0
  2. package/package.json +2 -2
  3. package/public/cards/bam.json +0 -6
package/bundles.tgz CHANGED
Binary file
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@sjcrh/proteinpaint-front",
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- "version": "2.139.0",
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+ "version": "2.139.1",
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  "browser": "src/app.js",
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  "main": "src/index.js",
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  "bin": "init.js",
@@ -12,7 +12,7 @@
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  "test:integration": "echo 'TODO: front integration tests'"
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  },
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  "devDependencies": {
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- "@sjcrh/proteinpaint-client": "2.139.0",
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+ "@sjcrh/proteinpaint-client": "2.139.1",
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  "webpack": "^5.76.0",
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  "webpack-cli": "^4.9.2",
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  "webpack-node-externals": "^3.0.0",
package/public/cards/bam.json CHANGED
@@ -2,7 +2,6 @@
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  "ppcalls": [
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  {
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  "label": "Whole Exome",
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- "download": "https://proteinpaint.stjude.org/ppdemo/hg19/bam/bamDemoData.westkit.tar.gz",
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  "urlparam": "?genome=hg19&block=1&position=chr4:55589607-55590007&bamfile=Test%20WES%20BAM,proteinpaint_demo/hg19/bam/kit.exon8.del.bam",
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  "runargs": {
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  "parseurl": true,
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  "label": "TP53 Deletion (deep sequencing)",
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  "message": "For specific variants, use the <span style='font-family: courier; display: inline-block; opacity: 0.7;font-size:16px;'>variants</span> key. Enter a number that is <em>zero based</em> for the position (i.e. <span style='font-family: courier; display: inline-block; opacity: 0.7; font-size:16px;'>pos</span> value).",
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  "urlparam": "?genome=hg19&block=1&bamfile=TP53_del,proteinpaint_demo/hg19/bam/TP53_del.bam&position=chr17:7578191-7578591&variant=chr17.7578383.AGCAGCGCTCATGGTGGGG.A&bedjfilterbyname=NM_000546",
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- "download": "https://proteinpaint.stjude.org/ppdemo/hg19/bam/bamTP53ExonDelDemo.tar.gz",
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  "runargs": {
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  "parseurl": true,
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  "block": true,
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  {
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  "label": "CBL Complex Mutation (exome-seq)",
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  "urlparam": "?genome=hg19&block=1&bamfile=SJAML040555_D2%20WES,proteinpaint_demo/hg19/bam/wrong_indel.bam&position=chr4:55589768-55589770&variant=chr4.55589768.CTTACGA.AGGG",
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- "download": "https://proteinpaint.stjude.org/ppdemo/hg19/bam/bamExonMutDemo.tar.gz",
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  "runargs": {
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  "parseurl": true,
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  "block": true,
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  {
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  "label": "SETD2 Splice Site Insertion (RNA-seq)",
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  "urlparam": "?genome=hg19&block=1&position=chr3:47155260-47155500&hlregion=chr3:47155365-47155365&bamfile=splice_junction_variant,proteinpaint_demo/hg19/bam/splice_junction_variant.bam&variant=chr3.47155366.G.GGGGCT",
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- "download": "https://proteinpaint.stjude.org/ppdemo/hg19/bam/bamSpliceSiteDemo.tar.gz",
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  "runargs": {
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  "parseurl": true,
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  "block": true,
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  {
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  "label": "Multi-allelic Complex Mutations (RNA-seq)",
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  "message": "In this example, two alternate alleles, CTGACAGGCT and GTTTC, for multi-allelic KIT exonic complex mutations in one tumor are shown. Continue scrolling down to see the second BAM track for GTTTC",
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- "download": "https://proteinpaint.stjude.org/ppdemo/hg19/bam/bamMAMutDemo.tar.gz",
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  "runargs": {
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  "parseurl": true,
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  "block": true,
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  {
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  "label": "CREBBP Focal Deletion",
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  "urlparam": "?genome=hg19&block=1&bamfile=Focal deletion demo,proteinpaint_demo/hg19/bam/crebbp.bam&position=chr16:3800245-3803429",
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- "download": "https://proteinpaint.stjude.org/ppdemo/hg19/bam/bamExonicDelDemo.tar.gz",
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  "runargs": {
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  "parseurl": true,
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  "block": true,