@sjcrh/proteinpaint-front 2.124.0 → 2.125.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/bundles.tgz CHANGED
Binary file
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@sjcrh/proteinpaint-front",
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- "version": "2.124.0",
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+ "version": "2.125.0",
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  "browser": "src/app.js",
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  "main": "src/index.js",
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  "bin": "init.js",
@@ -12,7 +12,7 @@
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  "test:integration": "echo 'TODO: front integration tests'"
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  },
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  "devDependencies": {
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- "@sjcrh/proteinpaint-client": "2.124.0",
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+ "@sjcrh/proteinpaint-client": "2.125.0",
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  "webpack": "^5.76.0",
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  "webpack-cli": "^4.9.2",
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  "webpack-node-externals": "^3.0.0",
@@ -116,6 +116,7 @@
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  "type": "card",
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  "name": "Lollipop",
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  "section": "tracks",
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+ "ribbon": {"text": "updated", "expireDate": "2025-06-15"},
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  "description": "Coding mutations and gene fusions",
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  "image": "https://proteinpaint.stjude.org/ppdemo/images/lollipop-square.png",
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  "sandboxJson": "lollipop",
@@ -164,7 +164,7 @@
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  "label": "Serine",
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  "color": "#E74C3C",
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  "desc": "phosphorylated amino acid"
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- },
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+ },
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  "F": {
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  "label": "Tyrosine",
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  "color": "#00A86B",
@@ -174,9 +174,11 @@
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  }
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  },
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  "testSpec": {
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- "expected": { "circle": 10 }
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+ "expected": {
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+ "circle": 10
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+ }
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  },
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- "buttons":[
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+ "buttons": [
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  {
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  "name": "Custom Data Documentation",
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  "link": "https://github.com/stjude/proteinpaint/wiki/Lollipop-%E2%80%90-mds3#tkskewermodes"
@@ -277,7 +279,7 @@
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  "label": "Serine",
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  "color": "#E74C3C",
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  "desc": "phosphorylated amino acid"
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- },
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+ },
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  "F": {
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  "label": "Tyrosine",
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  "color": "#00A86B",
@@ -286,34 +288,60 @@
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  }
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  }
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  },
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- "buttons":[
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+ "buttons": [
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  {
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- "name":"Data Point Shape Documentation",
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+ "name": "Data Point Shape Documentation",
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  "link": "https://github.com/stjude/proteinpaint/wiki/Lollipop-%E2%80%90-mds3#mshape"
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  }
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  ],
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  "testSpec": {
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- "expected": { "circle": 10 }
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+ "expected": {
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+ "circle": 10
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+ }
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+ }
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+ },
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+ {
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+ "label": "Setting default display",
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+ "message": "Adding <span style='font-family: Courier; opacity: 0.6;'>gmmode</span> to the block level sets the default display. Valid values are <span style='font-family: Courier; opacity: 0.6;'>protein, exon only, splicing RNA</span>, and <span style='font-family: Courier; opacity: 0.6;'>genomic</span> ",
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+ "runargs": {
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+ "nobox": 1,
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+ "noheader": 1,
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+ "genome": "hg38",
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+ "gene": "TP53",
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+ "gmmode": "splicing RNA"
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+ },
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+ "buttons": [
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+ {
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+ "name": "Gene View Documentation",
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+ "link": "https://github.com/stjude/proteinpaint/wiki/Embedding#gene-view"
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+ }
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+ ],
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+ "testSpec": {
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+ "expected": {
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+ "rect": 1
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+ }
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  }
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  },
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  {
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  "label": "Official dataset",
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  "urlparam": "?genome=hg19&gene=JAK2&dataset=Pediatric",
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  "runargs": {
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- "gene":"jak2",
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+ "gene": "jak2",
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  "nobox": 1,
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  "noheader": 1,
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  "genome": "hg19",
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- "dataset":"Pediatric"
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+ "dataset": "Pediatric"
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  },
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- "buttons":[
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+ "buttons": [
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  {
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- "name":"Build an Official Dataset",
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+ "name": "Build an Official Dataset",
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  "link": "https://docs.google.com/document/d/1iY7x9PzAzLKzdABam_Tfg8h-kQ0oh2UyyKC0cP-9YWA/edit"
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  }
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  ],
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  "testSpec": {
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- "expected": { "circle": 10 }
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+ "expected": {
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+ "circle": 10
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+ }
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  }
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  }
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  ],
@@ -323,6 +351,6 @@
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  "link": "https://docs.google.com/document/d/1D78jKVaQrWBhAjnfmCqj0Cirf6s-CdcbfPkuZQMT8Co/edit#heading=h.tyjcwt"
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  }
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  ],
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- "ribbonMessage": "Please see the newest Custom Variant example!",
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+ "ribbonMessage": "Please see our newest example of setting the default protein view.",
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  "citation_id": 1001
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- }
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+ }