@sjcrh/proteinpaint-front 2.108.0 → 2.109.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/bundles.tgz +0 -0
- package/package.json +2 -2
- package/public/cards/citations.json +1 -1
- package/public/cards/dataMatrix.json +0 -2
- package/public/cards/databrowser.json +0 -2
- package/public/cards/featuredDatasets.json +0 -2
- package/public/cards/geneExp.json +2 -8
- package/public/cards/scatterplot.json +3 -6
- package/public/cards/singlecell.json +1 -3
- package/public/cards/survivorBtn.json +0 -2
- package/public/cards/wsi.json +0 -1
package/bundles.tgz
CHANGED
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Binary file
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package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@sjcrh/proteinpaint-front",
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"version": "2.
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"version": "2.109.0",
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"browser": "src/app.js",
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"main": "src/index.js",
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"bin": "init.js",
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"test:integration": "echo 'TODO: front integration tests'"
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},
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"devDependencies": {
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"@sjcrh/proteinpaint-client": "2.
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"@sjcrh/proteinpaint-client": "2.109.0",
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"webpack": "^5.76.0",
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"webpack-cli": "^4.9.2",
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"webpack-node-externals": "^3.0.0",
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{
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"id": 1007,
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"title": "ppHiC: Interactive exploration of Hi-C results on the ProteinPaint web portal",
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"appHeaderTitle":"ppHiC:
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"appHeaderTitle":"ppHiC: Rajput A <em>et al</em>",
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"year": "2024",
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"journal": "Computational and Structural Biotechnology Journal",
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"pmid": "39430404",
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"ribbonMessage": "Please explore our newest tool, gene expression clustering.",
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"ppcalls": [
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{
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"urlparam":"/?
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"urlparam":"/?mass={%22dslabel%22:%22GDC%22,%22genome%22:%22hg38%22,%22nav%22:{%22header_mode%22:%22hidden%22},%22termfilter%22:{%22filter0%22:{%22op%22:%22and%22,%22content%22:[{%22op%22:%22in%22,%22content%22:{%22field%22:%22cases.project.project_id%22,%22value%22:[%22TCGA-GBM%22]}}]}},%22plots%22:[{%22chartType%22:%22hierCluster%22,%22dataType%22:%22geneExpression%22,%22terms%22:[{%22gene%22:%22AKT1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22MYC%22,%22type%22:%22geneExpression%22},{%22gene%22:%22YAP1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22CD109%22,%22type%22:%22geneExpression%22},{%22gene%22:%22BCL6%22,%22type%22:%22geneExpression%22},{%22gene%22:%22BRAF%22,%22type%22:%22geneExpression%22},{%22gene%22:%22CDKN2A%22,%22type%22:%22geneExpression%22},{%22gene%22:%22CD34%22,%22type%22:%22geneExpression%22},{%22gene%22:%22ALDH1A3%22,%22type%22:%22geneExpression%22},{%22gene%22:%22CTNNB1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22CXCL14%22,%22type%22:%22geneExpression%22},{%22gene%22:%22E2F1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22EGFR%22,%22type%22:%22geneExpression%22},{%22gene%22:%22PTEN%22,%22type%22:%22geneExpression%22},{%22gene%22:%22FAT1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22FGFR1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22FOXM1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22IDH1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22IDH2%22,%22type%22:%22geneExpression%22},{%22gene%22:%22HOXA10%22,%22type%22:%22geneExpression%22},{%22gene%22:%22HOXA13%22,%22type%22:%22geneExpression%22},{%22gene%22:%22HOXA9%22,%22type%22:%22geneExpression%22},{%22gene%22:%22LAT1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22MAPK1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22MAPK3%22,%22type%22:%22geneExpression%22},{%22gene%22:%22MMP1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22MGMT%22,%22type%22:%22geneExpression%22},{%22gene%22:%22NOTCH3%22,%22type%22:%22geneExpression%22},{%22gene%22:%22PIK3CA%22,%22type%22:%22geneExpression%22},{%22gene%22:%22PDGFRA%22,%22type%22:%22geneExpression%22},{%22gene%22:%22RB1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22TP53%22,%22type%22:%22geneExpression%22},{%22gene%22:%22WWTR1%22,%22type%22:%22geneExpression%22},{%22gene%22:%22ROS1%22,%22type%22:%22geneExpression%22}],%22termgroups%22:[{%22name%22:%22Variables%22,%22lst%22:[{%22id%22:%22case.diagnoses.age_at_diagnosis%22},{%22id%22:%22case.demographic.gender%22},{%22id%22:%22case.project.project_id%22},{%22id%22:%22case.tissue_source_site.name%22}]}]}]}",
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"runargs": {
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"nobox": 1,
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"noheader": 1,
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"mass": {
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"dslabel": "GDC",
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"gene": "WWTR1",
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"type": "geneExpression"
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{
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"gene": "ATRX",
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"type": "geneExpression"
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},
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"gene": "ROS1",
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"type": "geneExpression"
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}
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}
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]
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}
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}
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"label": "Tumor Methylome tSNE",
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"message": "<ul style='line-height:1.5;'><li><strong>Change the plot configuration</strong>: click on the burger button (three stacked lines) in the top left of the plot. The menu provides options to change the term, dot sizes, etc.</li><li><strong>Create groups</strong>: click on the paint brush, lasso the samples of interest, and use the pop-up menu for next steps.</li><li>Open other plots and analysis tools by clicking on the grey buttons above the scatter plot.</li></ul> ",
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"vocab": {
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"label": "Age and Heart",
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"runargs": {
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"host": "https://survivorship.proteinpaint.stjude.org/",
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"noheader": true,
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}
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},
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"term": {
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"id": "agebaseline_s",
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"q": {
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"mode": "continuous"
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"id": "LV_Ejection_Fraction_3D_s",
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"mode": "continuous"
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"label": "3D PCA",
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"runargs": {
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"host": "https://survivorship.proteinpaint.stjude.org/",
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"mass": {
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"dslabel": "SJLife",
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"plots": [
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"chartType": "summary",
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"childType": "sampleScatter",
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"term": {
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"id": "eur_sjlife_pc1",
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"q": {
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{
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"label": "GDC Gene Expression",
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"vocab": {
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"ppcalls": [
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"label": "GDC datasets",
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"urlparam": "?mass={%22genome%22:%22hg38%22,%22dslabel%22:%22GDC%22,%22nav%22:{%22header_mode%22:%22hidden%22},%22plots%22:[{%22chartType%22:%22singleCellPlot%22}]}",
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"genome": "hg38",
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