@sjcrh/proteinpaint-client 2.76.2 → 2.77.0

package/dist/{mds.samplescatterplot-3f09ae0e.js → mds.samplescatterplot-254f1de6.js}

@@ -1 +1 @@
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OF GENE CRITERIA").attr("class","sja_clbtext").on("click",(()=>{if(m.style("display")=="none"){u(m)}else{y(m)}}));const f=m.append("div");const b=f.append("div").style("display","table-cell").style("width","110px");b.append("div").text("Consequences").style("padding-right","15px");const v=f.append("div").style("display","table-cell").style("border-left","solid 1px #ededed");r.forEach((e=>{const t=v.append("div");const s=t.append("input").attr("type","checkbox").attr("name","mut_type").attr("value",e.db_col).style("margin","3px").style("margin-left","4px").property("checked",e.default);s.on("change",(()=>{if(s.node().checked){l.push(s.node().value)}else{l=l.filter((e=>e!==s.node().value))}}));t.append("label").attr("for",e.db_col).html(e.label)}));const x=v.append("input").attr("type","checkbox").attr("name","noncnv").attr("value","cnv").style("margin","3px").style("margin-left","4px").property("checked",p?true:false).on("change",(()=>{if(x.node().checked){k.property("disabled",false);w.property("disabled",false)}else{k.property("disabled",true);w.property("disabled",true)}}));v.append("label").attr("for","cnv").text("CNV");const g=v.append("div").style("display","block").style("padding","3px 15px");const h=[...new Set(c.map((e=>e.sizecutoff)))];const _=[...new Set(c.map((e=>e.log2cutoff)))];g.append("label").attr("for","cnv_size").style("margin","2px 10px").text("Size cutoff");const k=g.append("select").attr("name","cnv_size");h.forEach((e=>{k.append("option").attr("value",e).text(e)}));k.property("selectedIndex",p.sizecutoff=="1Mb"?0:p.sizecutoff=="2Mb"?1:2);g.append("label").attr("for","log2_ratio").style("margin","2px 10px").text("log2(ratio) cutoff");const w=g.append("select").attr("name","log2_ratio");_.forEach((e=>{w.append("option").attr("value",e.toFixed(1)).text(e.toFixed(1))}));w.property("selectedIndex",p.log2cutoff==.1?0:p.log2cutoff==.2?1:2);const O=m.append("div").style("padding-top","10px");const j=O.append("div").style("display","table-cell").style("width","110px");j.append("div").text("No. of Genes").style("padding-right","15px");const z=O.append("div").style("display","table-cell").style("padding","3px").style("border-left","solid 1px #ededed");const S=[10,15,20,30,40];const A=z.append("select").attr("name","gene_n");S.forEach((e=>{A.append("option").attr("value",e).text(e)}));A.property("selectedIndex",S.findIndex((e=>e==n)));m.append("button").style("margin","10px").style("padding","3px 10px").text("Calculate").on("click",(()=>{const s=v.node().querySelectorAll("input:checked");l=[];s.forEach((e=>{if(e.value!=="cnv"&&!l.includes(e.value))l.push(e.value);else if(e.value=="cnv"){const e=k.node().value;const t=w.node().value;o=c.find((s=>s.sizecutoff==e&&s.log2cutoff==t));l.push(o.db_col)}}));n=A.node().value;oe(e,t,l,n);a=[...l]}))}else a=["total"];oe(e,t,a,n)}async function oe(e,t,s,l){try{const o={genome:e.genome.name,dslabel:e.mds.label,samples:t,selectedMutTypes:s,nGenes:l};const n=await a("mdsgenecount",{method:"POST",body:JSON.stringify(o)});if(n.error)throw n.error;if(!n.genes)throw".genes missing";if(!n.genes.length){e.pane.wait.html("No gene retrived with mutations.");e.pane.matrix_criteria_div.style("display","none");return}ne({obj:e,genes:n.genes,samples:t,holder:e.pane.body});e.pane.wait.remove()}catch(t){e.pane.wait.text("Error: "+(t.message||t));if(t.stack)console.log(t.stack)}}function ne(e){const{obj:t,genes:s,samples:a}=e;const l=t.pane.sample_matrix_div;l.selectAll("*").remove();for(const e of s){e.ismutation=true;e.genename=e.gene;e.label=e.gene;delete e.gene;e.querykeylst=["svcnv","snvindel"];t.features_on_rows?e.height=50:e.width=50}const o={genome:t.genome,dslabel:t.mds.label,features:s,features_on_rows:t.features_on_rows,ismutation_allsymbolic:true,hostURL:sessionStorage.getItem("hostURL")||"",limitbysamplesetgroup:{samples:a},jwt:sessionStorage.getItem("jwt")||"",holder:l.append("div").style("margin","20px")};import("./samplematrix-0841387f.js").then((e=>{const t=new e.Samplematrix(o);t._pane=l}))}function ie(e){const{obj:t,dot:s,sampletracks:a,holder:l}=e;const o={genome:t.genome,hostURL:sessionStorage.getItem("hostURL")||"",jwt:sessionStorage.getItem("jwt")||"",holder:l,chr:t.genome.defaultcoord.chr,start:t.genome.defaultcoord.start,stop:t.genome.defaultcoord.stop,nobox:1,tklst:[]};if(t.tracks){for(const e of t.tracks)o.tklst.push(e)}const n=t.mds.queries[t.querykey];if(n){const e={singlesample:{name:s.sample},mds:t.mds,querykey:t.querykey};for(const t in n){e[t]=n[t]}o.tklst.push(e);if(n.checkexpressionrank){const e={type:b.mdsexpressionrank,name:s.sample+" gene expression rank",dslabel:t.mds.label,querykey:n.checkexpressionrank.querykey,sample:s.sample};if(n.groupsamplebyattr){const t=n.groupsamplebyattr.attrlst;if(t&&t.length){e.attributes=[];for(const a of t){e.attributes.push({k:a.k,label:a.label,kvalue:s.s[a.k]})}}}o.tklst.push(e)}}if(a){for(const e of a)o.tklst.push(e)}v(t.genome,o.tklst);g(o)}export{X as init};
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n=S(t.label,l)[0];a.indexOf(t);F(n,a.filter((e=>e!=t)));if(s.applyTo=="all"){Object.assign(t,n)}else{if(n.overlapSum>=t.overlapSum){t.label.selectAll(s.css.selector).each((function(t){e(this).attr(s.css.key,o.get(this))}))}else{Object.assign(t,n)}}}async function T(t,s,a,l){const o=Object.keys(t.maxFree).filter((e=>t.maxFree[e]>0));if(!o.length)return;const n=new Map;if(t.maxOverlaps.y&&t.maxOverlaps.y.val>0){if(t.maxOverlaps.y.dir=="s"&&o.includes("n")){t.label.selectAll(s.css.selector).each((function(a){const l=e(this);n.set(this,l.attr("y")||0);l.attr("y",Math.max(-t.maxFree.n,-t.maxOverlaps.y.val)-s.pad)}))}if(t.maxOverlaps.y.dir=="n"&&o.includes("s")){t.label.selectAll(s.css.selector).each((function(a){const l=e(this);n.set(this,l.attr("y")||0);l.attr("y",Math.min(t.maxFree.s,t.maxOverlaps.y.val)+s.pad)}))}}if(n.size){await R(l.waitTime);const o=S(t.label,l)[0];F(o,a.filter((e=>e!=t)));if(o.overlapSum>=t.overlapSum){t.label.selectAll(s.css.selector).each((function(t){e(this).attr("y",n.get(this))}))}else{Object.assign(t,o);if(!t.collisions.length)return}}if(t.maxOverlaps.x&&t.maxOverlaps.x.val>0){if(t.maxOverlaps.x.dir=="e"&&o.includes("w")){t.label.selectAll(s.css.selector).each((function(a){const l=e(this);n.set(this,l.attr("x")||0);l.attr("x",Math.max(-t.maxFree.w,-t.maxOverlaps.x.val)-s.pad)}))}if(t.maxOverlaps.x.dir=="w"&&o.includes("e")){t.label.selectAll(s.css.selector).each((function(a){const l=e(this);n.set(this,l.attr("x")||0);l.attr("x",Math.min(t.maxFree.e,t.maxOverlaps.x.val)+s.pad)}))}}if(!n.size)return;await R(l.waitTime);const i=S(t.label,l)[0];F(i,a.filter((e=>e!=t)));if(i.overlapSum>=t.overlapSum){t.label.selectAll(s.css.selector).each((function(t){e(this).attr("x",n.get(this))}))}else{Object.assign(t,i)}}const C={restyle:E,move:T};function B(e){return}function R(e){return new 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#858585");if(a){e.dotselection.transition().attr("r",(e=>e.s[t.key]==s?q:L))}else{e.dotselection.filter((e=>e.s[t.key]==s)).transition().attr("r",q)}}));o.append("div").style("display","inline-block").attr("class","sja_mcdot").style("background",l.color).style("margin-right","3px").text(l.count);o.append("div").style("display","inline-block").style("color",l.color).text(l.name||s);l.cell=o}}}function V(t){const s=t.dots.filter((e=>t.filteredSamples.has(e.sample)));const a=Array.from(s,(e=>e.s));const l=t.attr_levels?.[0].label||t.attr_levels?.[0].key;const o=[...new Set(Array.from(a,(e=>e[l])))];const n=t.attr_levels?.[1].label||t.attr_levels?.[1].key;const i=[...new Set(Array.from(a,(e=>e[n])))];const r=t.legendtable.node().querySelectorAll(".sja_lb_div");for(const t of r){const s=e(t).select(".sja_l1lb").node().innerText.split(/\s{2}n=/)[0];if(!o.includes(s))e(t).style("display","none");else{e(t).style("display","block");const s=e(t).node().querySelectorAll(".sja_clb");for(const t of s){const s=e(t).node().querySelectorAll("div")[1];if(!i.includes(s.innerText))e(t).style("display","none");else e(t).style("display","inline-block")}}}}function Q(e,t,s){if(t.dslabel){ee(e,t,s);return}if(t.mds){$(e,t,s);return}}async function $(e,t,s){const a=c({x:s.clientX,y:s.clientY});a.header.text(e.sample);const l=p(a.body);try{const s=await d();const o={genome:t.genome.name,dslabel:t.mds.label,querykey:t.mds.querykey,getsample4disco:e.sample};const n=await m("/mdssvcnv",o);if(n.error)throw n.error;if(!n.text)throw".text missing";const i=a.body.append("div");const r=await s.dtDisco({holderSelector:i,chromosomeType:t.genome.name,majorchr:t.genome.majorchr,settings:{showControls:false,selectedSamples:[]},callbacks:{geneLabelClick:{type:"genomepaint",hostURL:sessionStorage.getItem("hostURL")||"",genome:t.genome.name,dslabel:t.mds.label,sample:e.sample}}});const c={sampleName:e.sample,data:JSON.parse(n.text)};r.main(c);l.remove()}catch(e){l.text("Error: "+(e.message||e));if(e.stack)console.log(e.stack)}}function ee(e,t,s){const a=c({x:s.clientX,y:s.clientY});a.header.text(e.sample);const l=a.body.append("div").style("margin","20px").text("Loading ...");m("/mdssvcnv",{genome:t.genome.name,dslabel:t.dslabel,querykey:t.querykey,gettrack4singlesample:e.sample}).then((s=>{l.remove();ie({obj:t,dot:e,sampletracks:s.tracks,holder:a.body})}))}function te(e,t){const s=e.scattersvg;let a;if(e.lasso_active){a=h().items(t.selectAll("circle")).targetArea(s);a.on("start",l).on("draw",o).on("end",n);s.call(a)}else{s.selectAll(".lasso").remove();s.on("mousedown.drag",null)}function l(){if(!e.lasso_active)return;a.items().attr("r",2).style("fill-opacity",".5").classed("not_possible",true).classed("selected",false)}function o(){if(!e.lasso_active)return;a.possibleItems().attr("r",q).style("fill-opacity","1").classed("not_possible",false).classed("possible",true)}function n(t){if(!e.lasso_active)return;const l=s.selectAll(".possible").data().map((e=>e.sample));if(l.length)i(t,l);else e.menu.hide();a.items().classed("not_possible",false).classed("possible",false);a.selectedItems().attr("r",q);a.notSelectedItems().attr("r",l.length==0?q:L).style("fill-opacity","1")}function i(t,s){e.menu.clear().show(t.sourceEvent.clientX-90,t.sourceEvent.clientY);if(e.mds&&e.mds.gene2mutcount){e.menu.d.append("div").attr("class","sja_menuoption").text("Recurrently mutated genes").on("click",(async()=>{e.menu.hide();await ae(e,s)}))}for(const t of e.lasso.postSelectMenuOptions){e.menu.d.append("div").attr("class","sja_menuoption").text(t.label).on("click",(async()=>{e.menu.hide();const a={samples:s,sample_attributes:e.sample_attributes,sample2dot:e.sample2dot};if(t.callback=="listSamples")se(a);else t.callback(a)}))}e.menu.d.append("div").attr("class","sja_menuoption").text("Cancel").on("click",(()=>{a.items().classed("not_possible",false).classed("possible",false).attr("r",q).style("fill-opacity","1");e.menu.hide()}));e.menu.d.append("div").style("padding","10px").style("font-size",".8em").style("width","150px").text(s.length+" samples selected")}}function se(e){const{samples:t,sample_attributes:s,sample2dot:a}=e;const l=Object.keys(s);let o=l.map((e=>s[e].label?s[e].label:e));o.unshift("Sample");const n=o.join("\t");const i=[n];for(const e of t){if(a.get(e).s){let t=[];t.push(e);for(const s of l)t.push(a.get(e).s[s]);i.push(t.join("\t"))}}f("List of selected samples",[{text:i.join("\n")}])}function ae(e,t){e.pane=c({x:event.clientX,y:event.clientY});e.pane.header.text("Recurrently Mutated Genes");e.pane.wait=p(e.pane.body);e.pane.matrix_criteria_div=e.pane.body.append("div");e.pane.sample_matrix_div=e.pane.body.append("div");le(e,t)}function le(e,t){let s=[],a=[],l=[],o,n=15;const i=e.pane.matrix_criteria_div;if(e.mds.mutCountType){s=e.mds.mutCountType;const r=s.filter((e=>!e.db_col.includes("cnv")));const c=s.filter((e=>e.db_col.includes("cnv")));const p=c.find((e=>e.default));o=p;a=s.filter((e=>e.default)).map((e=>e.db_col));l=[...a];const d=i.append("div").style("margin","5px 20px");const m=i.append("div").style("margin","5px 20px").style("padding","5px").style("border-top","solid 1px #ededed").style("border-bottom","solid 1px #ededed").style("background-color","#FCFBF7").style("font-size",".8em");d.append("span").style("margin-right","20px").style("font-size",".8em").text("MUTATION COUNT & NO. OF GENE CRITERIA").attr("class","sja_clbtext").on("click",(()=>{if(m.style("display")=="none"){u(m)}else{y(m)}}));const f=m.append("div");const b=f.append("div").style("display","table-cell").style("width","110px");b.append("div").text("Consequences").style("padding-right","15px");const v=f.append("div").style("display","table-cell").style("border-left","solid 1px #ededed");r.forEach((e=>{const t=v.append("div");const s=t.append("input").attr("type","checkbox").attr("name","mut_type").attr("value",e.db_col).style("margin","3px").style("margin-left","4px").property("checked",e.default);s.on("change",(()=>{if(s.node().checked){l.push(s.node().value)}else{l=l.filter((e=>e!==s.node().value))}}));t.append("label").attr("for",e.db_col).html(e.label)}));const x=v.append("input").attr("type","checkbox").attr("name","noncnv").attr("value","cnv").style("margin","3px").style("margin-left","4px").property("checked",p?true:false).on("change",(()=>{if(x.node().checked){k.property("disabled",false);w.property("disabled",false)}else{k.property("disabled",true);w.property("disabled",true)}}));v.append("label").attr("for","cnv").text("CNV");const g=v.append("div").style("display","block").style("padding","3px 15px");const h=[...new Set(c.map((e=>e.sizecutoff)))];const _=[...new Set(c.map((e=>e.log2cutoff)))];g.append("label").attr("for","cnv_size").style("margin","2px 10px").text("Size cutoff");const k=g.append("select").attr("name","cnv_size");h.forEach((e=>{k.append("option").attr("value",e).text(e)}));k.property("selectedIndex",p.sizecutoff=="1Mb"?0:p.sizecutoff=="2Mb"?1:2);g.append("label").attr("for","log2_ratio").style("margin","2px 10px").text("log2(ratio) cutoff");const w=g.append("select").attr("name","log2_ratio");_.forEach((e=>{w.append("option").attr("value",e.toFixed(1)).text(e.toFixed(1))}));w.property("selectedIndex",p.log2cutoff==.1?0:p.log2cutoff==.2?1:2);const O=m.append("div").style("padding-top","10px");const j=O.append("div").style("display","table-cell").style("width","110px");j.append("div").text("No. of Genes").style("padding-right","15px");const z=O.append("div").style("display","table-cell").style("padding","3px").style("border-left","solid 1px #ededed");const S=[10,15,20,30,40];const A=z.append("select").attr("name","gene_n");S.forEach((e=>{A.append("option").attr("value",e).text(e)}));A.property("selectedIndex",S.findIndex((e=>e==n)));m.append("button").style("margin","10px").style("padding","3px 10px").text("Calculate").on("click",(()=>{const s=v.node().querySelectorAll("input:checked");l=[];s.forEach((e=>{if(e.value!=="cnv"&&!l.includes(e.value))l.push(e.value);else if(e.value=="cnv"){const e=k.node().value;const t=w.node().value;o=c.find((s=>s.sizecutoff==e&&s.log2cutoff==t));l.push(o.db_col)}}));n=A.node().value;oe(e,t,l,n);a=[...l]}))}else a=["total"];oe(e,t,a,n)}async function oe(e,t,s,l){try{const o={genome:e.genome.name,dslabel:e.mds.label,samples:t,selectedMutTypes:s,nGenes:l};const n=await a("mdsgenecount",{method:"POST",body:JSON.stringify(o)});if(n.error)throw n.error;if(!n.genes)throw".genes missing";if(!n.genes.length){e.pane.wait.html("No gene retrived with mutations.");e.pane.matrix_criteria_div.style("display","none");return}ne({obj:e,genes:n.genes,samples:t,holder:e.pane.body});e.pane.wait.remove()}catch(t){e.pane.wait.text("Error: "+(t.message||t));if(t.stack)console.log(t.stack)}}function ne(e){const{obj:t,genes:s,samples:a}=e;const l=t.pane.sample_matrix_div;l.selectAll("*").remove();for(const e of s){e.ismutation=true;e.genename=e.gene;e.label=e.gene;delete e.gene;e.querykeylst=["svcnv","snvindel"];t.features_on_rows?e.height=50:e.width=50}const o={genome:t.genome,dslabel:t.mds.label,features:s,features_on_rows:t.features_on_rows,ismutation_allsymbolic:true,hostURL:sessionStorage.getItem("hostURL")||"",limitbysamplesetgroup:{samples:a},jwt:sessionStorage.getItem("jwt")||"",holder:l.append("div").style("margin","20px")};import("./samplematrix-3556e5c0.js").then((e=>{const t=new e.Samplematrix(o);t._pane=l}))}function ie(e){const{obj:t,dot:s,sampletracks:a,holder:l}=e;const o={genome:t.genome,hostURL:sessionStorage.getItem("hostURL")||"",jwt:sessionStorage.getItem("jwt")||"",holder:l,chr:t.genome.defaultcoord.chr,start:t.genome.defaultcoord.start,stop:t.genome.defaultcoord.stop,nobox:1,tklst:[]};if(t.tracks){for(const e of t.tracks)o.tklst.push(e)}const n=t.mds.queries[t.querykey];if(n){const e={singlesample:{name:s.sample},mds:t.mds,querykey:t.querykey};for(const t in n){e[t]=n[t]}o.tklst.push(e);if(n.checkexpressionrank){const e={type:b.mdsexpressionrank,name:s.sample+" gene expression rank",dslabel:t.mds.label,querykey:n.checkexpressionrank.querykey,sample:s.sample};if(n.groupsamplebyattr){const t=n.groupsamplebyattr.attrlst;if(t&&t.length){e.attributes=[];for(const a of t){e.attributes.push({k:a.k,label:a.label,kvalue:s.s[a.k]})}}}o.tklst.push(e)}}if(a){for(const e of a)o.tklst.push(e)}v(t.genome,o.tklst);g(o)}export{X as init};

package/dist/{mds.survivalplot-1d8f2b7e.js → mds.survivalplot-f440db10.js}

@@ -1 +1 @@
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t={genome:e.genome.name,dslabel:e.mds.label,init:1};return n("mdssurvivalplot",t).then((t=>{if(t.error)throw t.error;if(!t.plottypes)throw"plottypes[] missing";e.plottypes=t.plottypes;e.samplegroupings=t.samplegroupings}))}function f(e,t){y(e,t);const s=t.uidiv.append("div").style("margin","20px");if(t.plottypes.length>1){const n=s.append("div").style("margin-bottom","10px").append("select").on("change",(t=>{e.type=t.target.options[t.target.selectedIndex].value}));for(const[s,a]of t.plottypes.entries()){n.append("option").text(a.name).property("value",a.key);if(a.key==e.type){n.node().selectedIndex=s}}}if(t.samplegroupings&&!e.samplerule.full.immutable){const n=s.append("div").style("margin-bottom","20px");const a=s.append("div").style("display","none");n.append("span").html("Choose samples from&nbsp;").style("opacity",.5);const l={};const p=n.append("select").style("margin-right","5px").on("change",(t=>{for(const e in l){l[e].style("display","none")}const s=t.target.options[t.target.selectedIndex];a.style("display",s.usesampleset?"block":"none");if(s.useall){e.samplerule.full.useall=1;delete e.samplerule.full.byattr;return}if(s.usesampleset){delete e.samplerule.full.byattr;delete e.samplerule.full.useall;e.samplerule.full.usesampleset=1;v(e,a);return}delete e.samplerule.full.useall;e.samplerule.full.byattr=1;e.samplerule.key=s.key;const n=l[s.key];n.style("display","inline");e.samplerule.full.value=n.node().options[n.node().selectedIndex].value}));for(const[s,a]of t.samplegroupings.entries()){p.append("option").text(a.label).property("key",a.key);const t=e.samplerule.full.byattr&&e.samplerule.full.key==a.key;if(t){p.node().selectedIndex=s}const o=n.append("select").on("change",(t=>{e.samplerule.full.value=t.target.options[t.target.selectedIndex].value}));l[a.key]=o;o.style("display",t?"inline":"none");for(const[s,n]of a.values.entries()){o.append("option").text(n.value+" (n="+n.count+")").property("value",n.value);if(t&&n.value==e.samplerule.full.value){o.node().selectedIndex=s}}}p.append("option").text("all samples").property("useall",1);if(e.samplerule.full.useall){p.node().selectedIndex=t.samplegroupings.length}p.append("option").text("custom sampleset").property("usesampleset",1)}x(e,s);e.button=s.append("button").text("Make plot").on("click",(()=>{h(e,t)}));e.d=t.plotdiv.append("div").style("margin","20px"),e.legend={d_pvalue:e.d.append("div").style("margin","10px"),d_samplefull:e.d.append("div").style("margin","10px"),d_curves:e.d.append("div").style("margin","10px")};e.svg=e.d.append("svg");e.resize_handle=e.d.append("div").append("div").attr("class","sja_clbtext").text("drag to resize").style("float","right");if(e.renderplot){h(e,t)}}function y(e,t){if(!e.type){e.type=t.plottypes[0].key}if(!e.samplerule){e.samplerule={}}if(!e.samplerule.full){e.samplerule.full={}}if(t.samplegroupings){if(!e.samplerule.full.useall){e.samplerule.full.byattr=1;if(!e.samplerule.full.key){e.samplerule.full.key=t.samplegroupings[0].key;e.samplerule.full.value=t.samplegroupings[0].values[0].value}}}else{e.samplerule.full.useall=1}if(e.samplerule.set){const t=e.samplerule.set;if(t.geneexpression){if(!t.bymedian&&!t.byquartile){t.bymedian=1}}}if(!e.width)e.width=500;if(!e.height)e.height=500;if(!e.toppad)e.toppad=10;if(!e.rightpad)e.rightpad=10;if(!e.xaxispad)e.xaxispad=10;if(!e.yaxispad)e.yaxispad=10;if(!e.xaxish)e.xaxish=40;if(!e.yaxisw)e.yaxisw=65;if(!e.censorticksize)e.censorticksize=6;if(!e.tickfontsize)e.tickfontsize=14;if(!e.labfontsize)e.labfontsize=15}function g(e,t){const s=l(p);const n=0;let a=0;for(const t of e.samplesets){t.color=s(t.name);for(const e of t.steps){a=Math.max(a,e.x)}}e.svg.selectAll("*").remove();const c=e.svg.append("g");for(const t of e.samplesets){t.path=c.append("path").attr("stroke",t.color).attr("fill","none");t.ticks=c.append("path").attr("stroke",t.color).attr("fill","none")}const m=e.svg.append("g");const f=o().domain([0,1]);const y=e.svg.append("g");const g=y.append("text").text("Survival").attr("transform","rotate(-90)");const h=e.svg.append("g");const x=o().domain([n,a]);const v=e.svg.append("text").attr("font-size",e.labfontsize).text(t.plottypes.find((t=>t.key==e.type)).timelabel).attr("x",e.yaxisw+e.yaxispad+e.width/2).attr("y",e.toppad+e.height+e.xaxispad+e.xaxish-3);function b(){c.attr("transform","translate("+(e.yaxisw+e.yaxispad)+","+e.toppad+")");for(const t of e.samplesets){const s=[];const n=["M 0 0"];for(const l of t.steps){n.push("H "+e.width*l.x/a);const t=e.height*(l.y+l.drop);n.push("V "+t);if(l.censored){const t=e.height*l.y;for(const n of l.censored){const l=e.width*n/a;s.push("M "+(l-e.censorticksize/2)+" "+(t-e.censorticksize/2)+" l "+e.censorticksize+" 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t;h.append("text").text(a).attr("font-size",e.tickfontsize).each((function(){t=Math.floor(e.width/(this.getBBox().width+30))})).remove();r({axis:h.call(u().scale(x.range([0,e.width])).ticks(t)),showline:1,fontsize:e.tickfontsize});v.attr("font-size",e.labfontsize).attr("x",e.yaxisw+e.yaxispad+e.width/2).attr("y",e.toppad+e.height+e.xaxispad+e.xaxish-3);e.svg.attr("width",e.yaxisw+e.yaxispad+e.width+e.rightpad).attr("height",e.toppad+e.height+e.xaxispad+e.xaxish)}b();e.resize_handle.on("mousedown",(t=>{t.preventDefault();const s=i(document.body);const n=t.clientX;const a=t.clientY;const l=e.width;const p=e.height;s.on("mousemove",(()=>{e.width=l+t.clientX-n;e.height=p+t.clientY-a;b()}));s.on("mouseup",(()=>{s.on("mousemove",null).on("mouseup",null)}))}));if(Number.isFinite(e.pvalue)){e.legend.d_pvalue.style("display","block").text("P-value: "+e.pvalue)}else{e.legend.d_pvalue.style("display","none")}e.legend.d_curves.selectAll("*").remove();for(const t of e.samplesets){e.legend.d_curves.append("div").style("margin","3px").html('<span style="background:'+t.color+'">&nbsp;&nbsp;</span> '+t.name+(t.pvalue==undefined?"":", P-value: "+t.pvalue))}}function h(e,t){e.button.text("Loading...").attr("disabled",1);const s={genome:t.genome.name,dslabel:t.mds.label,type:e.type,samplerule:e.samplerule};n("mdssurvivalplot",s).then((s=>{if(s.error)throw s.error;if(!s.samplesets)throw"samplesets[] missing";e.samplesets=s.samplesets;e.pvalue=s.pvalue;g(e,t);if(e.samplerule.set&&e.samplerule.set.mutation){if(e.mutation_count.cnv)e.mutation_count.cnv.html("(n="+s.count_cnv+")&nbsp;");if(e.mutation_count.loh)e.mutation_count.loh.html("(n="+s.count_loh+")&nbsp;");if(e.mutation_count.snvindel)e.mutation_count.snvindel.html("(n="+s.count_snvindel+")&nbsp;");if(e.mutation_count.sv)e.mutation_count.sv.html("(n="+s.count_sv+")&nbsp;");if(e.mutation_count.fusion)e.mutation_count.fusion.html("(n="+s.count_fusion+")&nbsp;");if(e.mutation_count.itd)e.mutation_count.itd.html("(n="+s.count_itd+")&nbsp;")}})).catch((e=>{t.sayerror(e)})).then((()=>{e.button.text("Update plot").attr("disabled",null)}))}function x(e,t){if(!e.samplerule.set)return;const s=e.samplerule.set;if(s.geneexpression){if(!s.bymedian&&!s.byquartile){s.bymedian=1}const n=t.append("div").style("margin-bottom","10px");n.append("span").style("opacity",.5).html("Divide samples by "+s.gene+" expression with&nbsp;");const a=n.append("select").on("change",(t=>{const s=t.target.options[t.target.selectedIndex];if(s.median){e.samplerule.set.bymedian=1;delete e.samplerule.set.byquartile;l.style("display","none")}else if(s.quartile){e.samplerule.set.byquartile=1;delete e.samplerule.set.bymedian;l.style("display","inline")}}));a.append("option").text("median (group=2)").property("median",1);a.append("option").text("quartile (group=4)").property("quartile",1);const l=n.append("span").style("margin-left","10px");l.append("span").html("Compare each quartile against&nbsp;").style("opacity",.5);{const t=l.append("select").on("change",(t=>{delete e.samplerule.set.against1st;delete e.samplerule.set.against4th;switch(t.target.selectedIndex){case 0:break;case 1:e.samplerule.set.against1st=1;break;case 2:e.samplerule.set.against4th=1;break}}));t.append("option").text("none");t.append("option").text("first quartile");t.append("option").text("fourth quartile");if(s.against1st){t.node().selectedIndex=1}else if(t.against4th){t.node().selectedIndex=2}}if(s.bymedian){a.node().selectedIndex=0;l.style("display","none")}else if(s.byquartile){a.node().selectedIndex=1;l.style("display","inline")}}if(s.mutation){e.mutation_count={};if(s.snvindel){const n=t.append("div").style("margin-bottom","20px");e.mutation_count.snvindel=n.append("span");if(s.snvindel.name){n.append("span").html("SNV/indel&nbsp;");const e=n.append("select");e.append("option").text(s.snvindel.name).property("named",1);e.append("option").text("any mutation at "+s.chr+":"+s.start)}else{n.append("span").text("SNV/indel at "+s.chr+":"+(s.start==s.stop?s.start:s.start+"-"+s.stop))}}if(s.cnv){const n=t.append("div").style("margin-bottom","20px");e.mutation_count.cnv=n.append("span");n.append("span").html("Copy number variation over "+s.chr+":"+s.start+"-"+s.stop+' <span style="font-size:.7em">'+a(s.stop-s.start)+"</span>&nbsp;")}if(s.loh){const n=t.append("div").style("margin-bottom","20px");e.mutation_count.loh=n.append("span");n.append("span").html("LOH over "+s.chr+":"+s.start+"-"+s.stop+' <span style="font-size:.7em">'+a(s.stop-s.start)+"</span>&nbsp;")}if(s.sv){const n=t.append("div").style("margin-bottom","20px");e.mutation_count.sv=n.append("span");n.append("span").html("SV at "+s.chr+":"+(s.start==s.stop?s.start:s.start+"-"+s.stop)+"&nbsp;")}if(s.fusion){const n=t.append("div").style("margin-bottom","20px");e.mutation_count.fusion=n.append("span");n.append("span").html("Fusion at "+s.chr+":"+(s.start==s.stop?s.start:s.start+"-"+s.stop)+"&nbsp;")}if(s.itd){const n=t.append("div").style("margin-bottom","20px");e.mutation_count.itd=n.append("span");n.append("span").html("ITD over "+s.chr+":"+s.start+"-"+s.stop+' <span style="font-size:.7em">'+a(s.stop-s.start)+"</span>&nbsp;")}}}function v(e,t){let s=t.selectAll("div").size();if(s)return;const n=t.append("div").style("margin-bottom","10px");const a=n.append("div").style("margin-left","20px");a.append("div").style("vertical-align","top").style("display","inline-block").style("opacity",.5).html("Enter sample names<br>(one sample per line) &nbsp;");const l=a.append("textarea").style("display","inline-block").attr("cols","20").attr("rows","10").on("change",(()=>{let t=e.samplerule.full.sampleset=[];const s=l.property("value").trim();if(!s)return;for(const e of s.split("\n")){t.push(e)}}))}export{c as init};
+import{M as e,j as t,U as s,q as n,ae as a,a8 as l,af as p,I as o,d as i,ag as r}from"./app-3d14cbe4.js";import{b as d,a as u}from"./axis-747c801e.js";async function c(n,a,l){if(l){window.obj=n}n.plots=[];n.menu=new e({padding:"5px"});n.tip=new e({padding:"5px"});n.errordiv=a.append("div").style("margin","10px");n.sayerror=e=>{t(n.errordiv,typeof e=="string"?e:e.message);if(e.stack)console.log(e.stack)};n.uidiv=a.append("div").style("margin","20px");n.plotdiv=a.append("div").style("margin","20px");n.legendtable=a.append("table").style("border-spacing","5px");a.append("button").text("SVG").on("click",(()=>{s(n.plotlist[0].svg.node(),"Survival")}));try{await m(n);if(!n.plotlist){n.plotlist=[]}if(!Array.isArray(n.plotlist))throw".plotlist should be array";if(n.plotlist.length==0){const e={type:n.plottypes[0].key};n.plotlist.push(e)}for(const e of n.plotlist){f(e,n)}}catch(e){if(e.stack)console.log(e.stack);n.sayerror("Cannot make plot: "+(e.message||e))}}function m(e){const t={genome:e.genome.name,dslabel:e.mds.label,init:1};return n("mdssurvivalplot",t).then((t=>{if(t.error)throw t.error;if(!t.plottypes)throw"plottypes[] missing";e.plottypes=t.plottypes;e.samplegroupings=t.samplegroupings}))}function f(e,t){y(e,t);const s=t.uidiv.append("div").style("margin","20px");if(t.plottypes.length>1){const n=s.append("div").style("margin-bottom","10px").append("select").on("change",(t=>{e.type=t.target.options[t.target.selectedIndex].value}));for(const[s,a]of t.plottypes.entries()){n.append("option").text(a.name).property("value",a.key);if(a.key==e.type){n.node().selectedIndex=s}}}if(t.samplegroupings&&!e.samplerule.full.immutable){const n=s.append("div").style("margin-bottom","20px");const a=s.append("div").style("display","none");n.append("span").html("Choose samples from&nbsp;").style("opacity",.5);const l={};const p=n.append("select").style("margin-right","5px").on("change",(t=>{for(const e in l){l[e].style("display","none")}const s=t.target.options[t.target.selectedIndex];a.style("display",s.usesampleset?"block":"none");if(s.useall){e.samplerule.full.useall=1;delete e.samplerule.full.byattr;return}if(s.usesampleset){delete e.samplerule.full.byattr;delete e.samplerule.full.useall;e.samplerule.full.usesampleset=1;v(e,a);return}delete e.samplerule.full.useall;e.samplerule.full.byattr=1;e.samplerule.key=s.key;const n=l[s.key];n.style("display","inline");e.samplerule.full.value=n.node().options[n.node().selectedIndex].value}));for(const[s,a]of t.samplegroupings.entries()){p.append("option").text(a.label).property("key",a.key);const t=e.samplerule.full.byattr&&e.samplerule.full.key==a.key;if(t){p.node().selectedIndex=s}const o=n.append("select").on("change",(t=>{e.samplerule.full.value=t.target.options[t.target.selectedIndex].value}));l[a.key]=o;o.style("display",t?"inline":"none");for(const[s,n]of a.values.entries()){o.append("option").text(n.value+" (n="+n.count+")").property("value",n.value);if(t&&n.value==e.samplerule.full.value){o.node().selectedIndex=s}}}p.append("option").text("all samples").property("useall",1);if(e.samplerule.full.useall){p.node().selectedIndex=t.samplegroupings.length}p.append("option").text("custom sampleset").property("usesampleset",1)}x(e,s);e.button=s.append("button").text("Make plot").on("click",(()=>{h(e,t)}));e.d=t.plotdiv.append("div").style("margin","20px"),e.legend={d_pvalue:e.d.append("div").style("margin","10px"),d_samplefull:e.d.append("div").style("margin","10px"),d_curves:e.d.append("div").style("margin","10px")};e.svg=e.d.append("svg");e.resize_handle=e.d.append("div").append("div").attr("class","sja_clbtext").text("drag to resize").style("float","right");if(e.renderplot){h(e,t)}}function y(e,t){if(!e.type){e.type=t.plottypes[0].key}if(!e.samplerule){e.samplerule={}}if(!e.samplerule.full){e.samplerule.full={}}if(t.samplegroupings){if(!e.samplerule.full.useall){e.samplerule.full.byattr=1;if(!e.samplerule.full.key){e.samplerule.full.key=t.samplegroupings[0].key;e.samplerule.full.value=t.samplegroupings[0].values[0].value}}}else{e.samplerule.full.useall=1}if(e.samplerule.set){const t=e.samplerule.set;if(t.geneexpression){if(!t.bymedian&&!t.byquartile){t.bymedian=1}}}if(!e.width)e.width=500;if(!e.height)e.height=500;if(!e.toppad)e.toppad=10;if(!e.rightpad)e.rightpad=10;if(!e.xaxispad)e.xaxispad=10;if(!e.yaxispad)e.yaxispad=10;if(!e.xaxish)e.xaxish=40;if(!e.yaxisw)e.yaxisw=65;if(!e.censorticksize)e.censorticksize=6;if(!e.tickfontsize)e.tickfontsize=14;if(!e.labfontsize)e.labfontsize=15}function g(e,t){const s=l(p);const n=0;let a=0;for(const t of e.samplesets){t.color=s(t.name);for(const e of t.steps){a=Math.max(a,e.x)}}e.svg.selectAll("*").remove();const c=e.svg.append("g");for(const t of e.samplesets){t.path=c.append("path").attr("stroke",t.color).attr("fill","none");t.ticks=c.append("path").attr("stroke",t.color).attr("fill","none")}const m=e.svg.append("g");const f=o().domain([0,1]);const y=e.svg.append("g");const g=y.append("text").text("Survival").attr("transform","rotate(-90)");const h=e.svg.append("g");const x=o().domain([n,a]);const v=e.svg.append("text").attr("font-size",e.labfontsize).text(t.plottypes.find((t=>t.key==e.type)).timelabel).attr("x",e.yaxisw+e.yaxispad+e.width/2).attr("y",e.toppad+e.height+e.xaxispad+e.xaxish-3);function b(){c.attr("transform","translate("+(e.yaxisw+e.yaxispad)+","+e.toppad+")");for(const t of e.samplesets){const s=[];const n=["M 0 0"];for(const l of t.steps){n.push("H "+e.width*l.x/a);const t=e.height*(l.y+l.drop);n.push("V "+t);if(l.censored){const t=e.height*l.y;for(const n of l.censored){const l=e.width*n/a;s.push("M "+(l-e.censorticksize/2)+" "+(t-e.censorticksize/2)+" l "+e.censorticksize+" "+e.censorticksize+" M "+(l+e.censorticksize/2)+" "+(t-e.censorticksize/2)+" l -"+e.censorticksize+" "+e.censorticksize)}}}t.path.attr("d",n.join(" "));if(s.length){t.ticks.attr("d",s.join(" "))}}m.attr("transform","translate("+e.yaxisw+","+e.toppad+")");r({axis:m.call(d().scale(f.range([e.height,0])).ticks(Math.floor(e.height/(e.tickfontsize+20)))),showline:1,fontsize:e.tickfontsize});y.attr("transform","translate("+e.labfontsize+","+(e.toppad+e.height/2)+")");g.attr("font-size",e.labfontsize);h.attr("transform","translate("+(e.yaxisw+e.yaxispad)+","+(e.toppad+e.height+e.xaxispad)+")");let t;h.append("text").text(a).attr("font-size",e.tickfontsize).each((function(){t=Math.floor(e.width/(this.getBBox().width+30))})).remove();r({axis:h.call(u().scale(x.range([0,e.width])).ticks(t)),showline:1,fontsize:e.tickfontsize});v.attr("font-size",e.labfontsize).attr("x",e.yaxisw+e.yaxispad+e.width/2).attr("y",e.toppad+e.height+e.xaxispad+e.xaxish-3);e.svg.attr("width",e.yaxisw+e.yaxispad+e.width+e.rightpad).attr("height",e.toppad+e.height+e.xaxispad+e.xaxish)}b();e.resize_handle.on("mousedown",(t=>{t.preventDefault();const s=i(document.body);const n=t.clientX;const a=t.clientY;const l=e.width;const p=e.height;s.on("mousemove",(()=>{e.width=l+t.clientX-n;e.height=p+t.clientY-a;b()}));s.on("mouseup",(()=>{s.on("mousemove",null).on("mouseup",null)}))}));if(Number.isFinite(e.pvalue)){e.legend.d_pvalue.style("display","block").text("P-value: "+e.pvalue)}else{e.legend.d_pvalue.style("display","none")}e.legend.d_curves.selectAll("*").remove();for(const t of e.samplesets){e.legend.d_curves.append("div").style("margin","3px").html('<span style="background:'+t.color+'">&nbsp;&nbsp;</span> '+t.name+(t.pvalue==undefined?"":", P-value: "+t.pvalue))}}function h(e,t){e.button.text("Loading...").attr("disabled",1);const s={genome:t.genome.name,dslabel:t.mds.label,type:e.type,samplerule:e.samplerule};n("mdssurvivalplot",s).then((s=>{if(s.error)throw s.error;if(!s.samplesets)throw"samplesets[] missing";e.samplesets=s.samplesets;e.pvalue=s.pvalue;g(e,t);if(e.samplerule.set&&e.samplerule.set.mutation){if(e.mutation_count.cnv)e.mutation_count.cnv.html("(n="+s.count_cnv+")&nbsp;");if(e.mutation_count.loh)e.mutation_count.loh.html("(n="+s.count_loh+")&nbsp;");if(e.mutation_count.snvindel)e.mutation_count.snvindel.html("(n="+s.count_snvindel+")&nbsp;");if(e.mutation_count.sv)e.mutation_count.sv.html("(n="+s.count_sv+")&nbsp;");if(e.mutation_count.fusion)e.mutation_count.fusion.html("(n="+s.count_fusion+")&nbsp;");if(e.mutation_count.itd)e.mutation_count.itd.html("(n="+s.count_itd+")&nbsp;")}})).catch((e=>{t.sayerror(e)})).then((()=>{e.button.text("Update plot").attr("disabled",null)}))}function x(e,t){if(!e.samplerule.set)return;const s=e.samplerule.set;if(s.geneexpression){if(!s.bymedian&&!s.byquartile){s.bymedian=1}const n=t.append("div").style("margin-bottom","10px");n.append("span").style("opacity",.5).html("Divide samples by "+s.gene+" expression with&nbsp;");const a=n.append("select").on("change",(t=>{const s=t.target.options[t.target.selectedIndex];if(s.median){e.samplerule.set.bymedian=1;delete e.samplerule.set.byquartile;l.style("display","none")}else if(s.quartile){e.samplerule.set.byquartile=1;delete e.samplerule.set.bymedian;l.style("display","inline")}}));a.append("option").text("median (group=2)").property("median",1);a.append("option").text("quartile (group=4)").property("quartile",1);const l=n.append("span").style("margin-left","10px");l.append("span").html("Compare each quartile against&nbsp;").style("opacity",.5);{const t=l.append("select").on("change",(t=>{delete e.samplerule.set.against1st;delete e.samplerule.set.against4th;switch(t.target.selectedIndex){case 0:break;case 1:e.samplerule.set.against1st=1;break;case 2:e.samplerule.set.against4th=1;break}}));t.append("option").text("none");t.append("option").text("first quartile");t.append("option").text("fourth quartile");if(s.against1st){t.node().selectedIndex=1}else if(t.against4th){t.node().selectedIndex=2}}if(s.bymedian){a.node().selectedIndex=0;l.style("display","none")}else if(s.byquartile){a.node().selectedIndex=1;l.style("display","inline")}}if(s.mutation){e.mutation_count={};if(s.snvindel){const n=t.append("div").style("margin-bottom","20px");e.mutation_count.snvindel=n.append("span");if(s.snvindel.name){n.append("span").html("SNV/indel&nbsp;");const e=n.append("select");e.append("option").text(s.snvindel.name).property("named",1);e.append("option").text("any mutation at "+s.chr+":"+s.start)}else{n.append("span").text("SNV/indel at "+s.chr+":"+(s.start==s.stop?s.start:s.start+"-"+s.stop))}}if(s.cnv){const n=t.append("div").style("margin-bottom","20px");e.mutation_count.cnv=n.append("span");n.append("span").html("Copy number variation over "+s.chr+":"+s.start+"-"+s.stop+' <span style="font-size:.7em">'+a(s.stop-s.start)+"</span>&nbsp;")}if(s.loh){const n=t.append("div").style("margin-bottom","20px");e.mutation_count.loh=n.append("span");n.append("span").html("LOH over "+s.chr+":"+s.start+"-"+s.stop+' <span style="font-size:.7em">'+a(s.stop-s.start)+"</span>&nbsp;")}if(s.sv){const n=t.append("div").style("margin-bottom","20px");e.mutation_count.sv=n.append("span");n.append("span").html("SV at "+s.chr+":"+(s.start==s.stop?s.start:s.start+"-"+s.stop)+"&nbsp;")}if(s.fusion){const n=t.append("div").style("margin-bottom","20px");e.mutation_count.fusion=n.append("span");n.append("span").html("Fusion at "+s.chr+":"+(s.start==s.stop?s.start:s.start+"-"+s.stop)+"&nbsp;")}if(s.itd){const n=t.append("div").style("margin-bottom","20px");e.mutation_count.itd=n.append("span");n.append("span").html("ITD over "+s.chr+":"+s.start+"-"+s.stop+' <span style="font-size:.7em">'+a(s.stop-s.start)+"</span>&nbsp;")}}}function v(e,t){let s=t.selectAll("div").size();if(s)return;const n=t.append("div").style("margin-bottom","10px");const a=n.append("div").style("margin-left","20px");a.append("div").style("vertical-align","top").style("display","inline-block").style("opacity",.5).html("Enter sample names<br>(one sample per line) &nbsp;");const l=a.append("textarea").style("display","inline-block").attr("cols","20").attr("rows","10").on("change",(()=>{let t=e.samplerule.full.sampleset=[];const s=l.property("value").trim();if(!s)return;for(const e of s.split("\n")){t.push(e)}}))}export{c as init};

package/dist/{metaboliteIntensity-bbb23c76.js → metaboliteIntensity-4d905d93.js}

@@ -1 +1 @@
-import{_ as e}from"./tslib.es6-c3c2d88f.js";import{P as n}from"./app-6fb77603.js";function i(e){switch(e){case"./numeric.binary.ts":return import("./numeric.binary-f382cc98.js");case"./numeric.continuous.ts":return import("./numeric.continuous-6feb34a7.js");case"./numeric.discrete.ts":return import("./numeric.discrete-ed10bbc1.js");case"./numeric.spline.ts":return import("./numeric.spline-a35cfbf0.js");case"./numeric.toggle.ts":return import("./numeric.toggle-2f98d6e5.js");default:return new Promise((function(n,i){(typeof queueMicrotask==="function"?queueMicrotask:setTimeout)(i.bind(null,new Error("Unknown variable dynamic import: "+e)))}))}}function t(n){return e(this,void 0,void 0,(function*(){const e=n.opts.numericEditMenuVersion;const i=e.length>1?"toggle":e[0];const t=yield o(i);return yield t.getHandler(n)}))}function r(i,t,r=null){var o;return e(this,void 0,void 0,(function*(){if(!((o=i.q)===null||o===void 0?void 0:o.mode))i.q={mode:"continuous"};if(r)n(i.q,r);if(i.q.mode!="continuous"&&!i.term.bins){yield t.setTermBins(i)}return i}))}function o(n){return e(this,void 0,void 0,(function*(){try{return yield i(`./numeric.${n}.ts`)}catch(e){if(e.stack)console.log(e.stack);throw`Type numeric.${n} does not exist [handlers/numeric.ts importSubtype()]`}}))}export{r as fillTW,t as getHandler};
+import{_ as e}from"./tslib.es6-c3c2d88f.js";import{P as n}from"./app-3d14cbe4.js";function i(e){switch(e){case"./numeric.binary.ts":return import("./numeric.binary-88bf9e0d.js");case"./numeric.continuous.ts":return import("./numeric.continuous-d27197cf.js");case"./numeric.discrete.ts":return import("./numeric.discrete-b826f33b.js");case"./numeric.spline.ts":return import("./numeric.spline-b3968b77.js");case"./numeric.toggle.ts":return import("./numeric.toggle-ab8b79be.js");default:return new Promise((function(n,i){(typeof queueMicrotask==="function"?queueMicrotask:setTimeout)(i.bind(null,new Error("Unknown variable dynamic import: "+e)))}))}}function t(n){return e(this,void 0,void 0,(function*(){const e=n.opts.numericEditMenuVersion;const i=e.length>1?"toggle":e[0];const t=yield o(i);return yield t.getHandler(n)}))}function r(i,t,r=null){var o;return e(this,void 0,void 0,(function*(){if(!((o=i.q)===null||o===void 0?void 0:o.mode))i.q={mode:"continuous"};if(r)n(i.q,r);if(i.q.mode!="continuous"&&!i.term.bins){yield t.setTermBins(i)}return i}))}function o(n){return e(this,void 0,void 0,(function*(){try{return yield i(`./numeric.${n}.ts`)}catch(e){if(e.stack)console.log(e.stack);throw`Type numeric.${n} does not exist [handlers/numeric.ts importSubtype()]`}}))}export{r as fillTW,t as getHandler};

package/dist/niceNumLabels-ef07b7ad.js

@@ -0,0 +1 @@
+import{j as t}from"./termsetting-7467350f.js";function n(n){const o=n.sort(((t,n)=>t-n));const s=Math.abs(o[0]-o[o.length-1]);const r=t(s);const e=s>=10?0:s>=1?1:r+2;return n.map((t=>Number(t.toFixed(e))))}export{n};

package/dist/{nodrag-b2737073.js → nodrag-f6c0801c.js}

@@ -1 +1 @@
-import{d as e}from"./app-6fb77603.js";const t={passive:false};const n={capture:true,passive:false};function s(e){e.stopImmediatePropagation()}function a(e){e.preventDefault();e.stopImmediatePropagation()}function o(t){var s=t.document.documentElement,o=e(t).on("dragstart.drag",a,n);if("onselectstart"in s){o.on("selectstart.drag",a,n)}else{s.__noselect=s.style.MozUserSelect;s.style.MozUserSelect="none"}}function l(t,s){var o=t.document.documentElement,l=e(t).on("dragstart.drag",null);if(s){l.on("click.drag",a,n);setTimeout((function(){l.on("click.drag",null)}),0)}if("onselectstart"in o){l.on("selectstart.drag",null)}else{o.style.MozUserSelect=o.__noselect;delete o.__noselect}}export{n as a,s as b,a as c,o as d,t as n,l as y};
+import{d as e}from"./app-3d14cbe4.js";const t={passive:false};const n={capture:true,passive:false};function s(e){e.stopImmediatePropagation()}function a(e){e.preventDefault();e.stopImmediatePropagation()}function o(t){var s=t.document.documentElement,o=e(t).on("dragstart.drag",a,n);if("onselectstart"in s){o.on("selectstart.drag",a,n)}else{s.__noselect=s.style.MozUserSelect;s.style.MozUserSelect="none"}}function l(t,s){var o=t.document.documentElement,l=e(t).on("dragstart.drag",null);if(s){l.on("click.drag",a,n);setTimeout((function(){l.on("click.drag",null)}),0)}if("onselectstart"in o){l.on("selectstart.drag",null)}else{o.style.MozUserSelect=o.__noselect;delete o.__noselect}}export{n as a,s as b,a as c,o as d,t as n,l as y};

package/dist/{notify-0cb8904f.js → notify-da3afe99.js}

@@ -1 +1 @@
-import{d as e}from"./app-6fb77603.js";const t=e("body").append("div").style("position","fixed").style("top",`16px`).style("right","10px").style("font-size","1.2em").style("background-color","rgba(250, 250, 250, 0.75)").style("z-index",1e4);let o,i=0;const s=sessionStorage.getItem("hostURL")||window.testHost||"";const n=s.endsWith("/")?`${s}sse`:`${s}/sse`;a();function a(){o=new EventSource(n);let s=0;o.onmessage=o=>{if(i===0)i=o.timeStamp;if(s===0)s=o.timeStamp;const n=JSON.parse(o.data);if(o.timeStamp>s&&n.find((e=>e.reload)));const a=n;const r=t.selectAll(`:scope>div`).data(a,(e=>e.key));r.exit().remove();r.style("color",(e=>e.color||(e.status=="ok"?"green":"red"))).style("border",(e=>`1px solid ${e.color||"#000"}`)).html((e=>`${e.key}: ${e.message}`)).each((function(t){if(t.reload&&o.timeStamp>s)window.location.reload();else if(t.duration){setTimeout((()=>e(this).transition().duration(t.duration).style("opacity",0).remove()),t.duration)}}));r.enter().append("div").style("margin","5px").style("padding","5px").style("border",(e=>`1px solid ${e.color||"#000"}`)).style("color",(e=>e.color||(e.status=="ok"?"green":"red"))).html((e=>`${e.key}: ${e.message}`)).on("click",(function(){})).each((function(t){if(t.reload&&o.timeStamp>s)window.location.reload();else if(t.duration){setTimeout((()=>e(this).transition().duration(t.duration).style("opacity",0).remove()),t.duration)}}))};o.onerror=e=>console.log(e)}document.addEventListener("visibilitychange",(()=>{if(document.hidden)o.close();else if(!o||o.readyState===2)a()}));
+import{d as e}from"./app-3d14cbe4.js";const t=e("body").append("div").style("position","fixed").style("top",`16px`).style("right","10px").style("font-size","1.2em").style("background-color","rgba(250, 250, 250, 0.75)").style("z-index",1e4);let o,i=0;const s=sessionStorage.getItem("hostURL")||window.testHost||"";const n=s.endsWith("/")?`${s}sse`:`${s}/sse`;a();function a(){o=new EventSource(n);let s=0;o.onmessage=o=>{if(i===0)i=o.timeStamp;if(s===0)s=o.timeStamp;const n=JSON.parse(o.data);if(o.timeStamp>s&&n.find((e=>e.reload)));const a=n;const r=t.selectAll(`:scope>div`).data(a,(e=>e.key));r.exit().remove();r.style("color",(e=>e.color||(e.status=="ok"?"green":"red"))).style("border",(e=>`1px solid ${e.color||"#000"}`)).html((e=>`${e.key}: ${e.message}`)).each((function(t){if(t.reload&&o.timeStamp>s)window.location.reload();else if(t.duration){setTimeout((()=>e(this).transition().duration(t.duration).style("opacity",0).remove()),t.duration)}}));r.enter().append("div").style("margin","5px").style("padding","5px").style("border",(e=>`1px solid ${e.color||"#000"}`)).style("color",(e=>e.color||(e.status=="ok"?"green":"red"))).html((e=>`${e.key}: ${e.message}`)).on("click",(function(){})).each((function(t){if(t.reload&&o.timeStamp>s)window.location.reload();else if(t.duration){setTimeout((()=>e(this).transition().duration(t.duration).style("opacity",0).remove()),t.duration)}}))};o.onerror=e=>console.log(e)}document.addEventListener("visibilitychange",(()=>{if(document.hidden)o.close();else if(!o||o.readyState===2)a()}));

package/dist/{numeric-24dacbee.js → numeric-1d0318e8.js}

@@ -1 +1 @@
-import{_ as e}from"./tslib.es6-c3c2d88f.js";function t(e){switch(e){case"./numeric.binary.ts":return import("./numeric.binary-f382cc98.js");case"./numeric.continuous.ts":return import("./numeric.continuous-6feb34a7.js");case"./numeric.discrete.ts":return import("./numeric.discrete-ed10bbc1.js");case"./numeric.spline.ts":return import("./numeric.spline-a35cfbf0.js");case"./numeric.toggle.ts":return import("./numeric.toggle-2f98d6e5.js");default:return new Promise((function(t,n){(typeof queueMicrotask==="function"?queueMicrotask:setTimeout)(n.bind(null,new Error("Unknown variable dynamic import: "+e)))}))}}function n(t){return e(this,void 0,void 0,(function*(){const e=t.opts.numericEditMenuVersion;const n=e.length>1?"toggle":e[0];const i=yield r(n);return yield i.getHandler(t)}))}function i(t,n,i=null){return e(this,void 0,void 0,(function*(){if(!t.q.mode){if(!i||i.mode)t.q.mode="discrete"}const e=t.term.type=="float"||t.term.type=="integer"?"toggle":t.q.mode;const o=yield r(e);return yield o.fillTW(t,n,i)}))}function r(n){return e(this,void 0,void 0,(function*(){try{return yield t(`./numeric.${n}.ts`)}catch(e){if(e.stack)console.log(e.stack);throw`Type numeric.${n} does not exist [handlers/numeric.ts importSubtype()]`}}))}export{i as fillTW,n as getHandler};
+import{_ as e}from"./tslib.es6-c3c2d88f.js";function t(e){switch(e){case"./numeric.binary.ts":return import("./numeric.binary-88bf9e0d.js");case"./numeric.continuous.ts":return import("./numeric.continuous-d27197cf.js");case"./numeric.discrete.ts":return import("./numeric.discrete-b826f33b.js");case"./numeric.spline.ts":return import("./numeric.spline-b3968b77.js");case"./numeric.toggle.ts":return import("./numeric.toggle-ab8b79be.js");default:return new Promise((function(t,n){(typeof queueMicrotask==="function"?queueMicrotask:setTimeout)(n.bind(null,new Error("Unknown variable dynamic import: "+e)))}))}}function n(t){return e(this,void 0,void 0,(function*(){const e=t.opts.numericEditMenuVersion;const n=e.length>1?"toggle":e[0];const i=yield r(n);return yield i.getHandler(t)}))}function i(t,n,i=null){return e(this,void 0,void 0,(function*(){if(!t.q.mode){if(!i||i.mode)t.q.mode="discrete"}const e=t.term.type=="float"||t.term.type=="integer"?"toggle":t.q.mode;const o=yield r(e);return yield o.fillTW(t,n,i)}))}function r(n){return e(this,void 0,void 0,(function*(){try{return yield t(`./numeric.${n}.ts`)}catch(e){if(e.stack)console.log(e.stack);throw`Type numeric.${n} does not exist [handlers/numeric.ts importSubtype()]`}}))}export{i as fillTW,n as getHandler};

package/dist/{numeric.binary-f382cc98.js → numeric.binary-88bf9e0d.js}

@@ -1 +1 @@
-import{_ as e}from"./tslib.es6-c3c2d88f.js";import{setDensityPlot as t}from"./density-09feb0c9.js";import{renderBoundaryInclusionInput as i,renderBoundaryInputDivs as n}from"./numeric.discrete-ed10bbc1.js";import{g as o,a as r}from"./termdb.bins-39d11f24.js";import{m as d}from"./checkbox-96437f4d.js";import{o as s}from"./termsetting-492eefa7.js";import{convertViolinData as a}from"./tvs.numeric-aa1f892f.js";import{v as l}from"./violinRenderer-14fa200d.js";import"./app-6fb77603.js";import"./drag-2e9c80bb.js";import"./nodrag-b2737073.js";import"./pointer-c7475677.js";import"./toggleButtons-c4d6f260.js";import"./radiobutton-09bff425.js";import"path";import"./tvs.density-034b506d.js";import"./brush-9faa7ae7.js";import"./niceNumLabels-29a7c6ca.js";import"./axis-747c801e.js";import"./line-264f8f9e.js";import"./constant-426a1483.js";import"./basis-3870f5ba.js";function u(o){return{getPillName(e){return s(o,e)},getPillStatus(){var e;return{text:((e=o.usecase)===null||e===void 0?void 0:e.target)=="regression"?o.data.q.lst.find((e=>e.label!=o.data.refGrp)).label:"binary"}},showEditMenu(r){var d,s,f,y;return e(this,void 0,void 0,(function*(){o.num_obj={};o.num_obj.plot_size={width:500,height:100,xpad:10,ypad:20};r.selectAll("*").remove();r.append("div").style("padding","10px").style("text-align","center").html("Getting distribution data ...<br/>");const v=yield o.vocabApi.getViolinPlotData({tw:{term:o.term,q:o.q},filter:o.filter,filter0:(s=(d=o.vocabApi.state)===null||d===void 0?void 0:d.termfilter)===null||s===void 0?void 0:s.filter0,svgw:o.num_obj.plot_size.width/window.devicePixelRatio},(y=(f=o.opts).getBodyParams)===null||y===void 0?void 0:y.call(f));o.num_obj.density_data=a(v);o.dom.num_holder=r;r.selectAll("*").remove();o.dom.density_div=r.append("div");o.vr=new l(o.dom.density_div,o.num_obj.density_data,o.num_obj.plot_size.width,o.num_obj.plot_size.height);o.num_obj.svg=o.vr.svg;o.dom.bins_div=r.append("div").style("padding","4px");m(o);t(o);i(o);o.dom.cutoff_div=o.dom.bins_div.append("div").style("margin","10px");p(o);o.dom.bins_table=o.dom.bins_div.append("div").style("display","flex").style("color","rgb(136, 136, 136)").style("margin","10px").style("width","100%");o.dom.rangeAndLabelDiv=o.dom.bins_table.append("div");n(o,o.q.lst);const b=r.append("div").style("padding","3px 10px");b.append("button").style("margin","5px").html("Apply").on("click",(()=>e(this,void 0,void 0,(function*(){delete o.q.startinclusive;delete o.q.stopinclusive;delete o.q.bin_size;delete o.q.first_bin;delete o.q.last_bin;o.q.lst=c(o);o.numqByTermIdModeType[o.term.id].binary=JSON.parse(JSON.stringify(o.q));o.q.mode="binary";o.runCallback()}))));b.append("button").style("margin","5px").html("Reset").on("click",(()=>{o.q={};delete o.numqByTermIdModeType[o.term.id];u(o).showEditMenu(o.dom.num_holder)}))}))}}}function m(e){const t=e.num_obj.density_data;const i=e.q&&e.q.lst&&e.q.lst.length?e.q.lst[0].stop:undefined;const n=e.numqByTermIdModeType;if(!e.term)throw`Missing .term{} [numeric.binary, setqDefaults()]`;const d=e.term;if(!n[d.id])n[d.id]={};if(!n[d.id].binary){const o=i!==undefined?Number(i):t.maxvalue!=t.minvalue?t.minvalue+(t.maxvalue-t.minvalue)/2:t.maxvalue;n[d.id].binary={mode:"binary",type:"custom-bin",modeBinaryCutoffType:"normal",modeBinaryCutoffPercentile:50,lst:[{startunbounded:true,stopinclusive:true,stop:o.toFixed(e.term.type=="integer"?0:2)},{stopunbounded:true,start:o.toFixed(e.term.type=="integer"?0:2)}]}}if(!e.q||e.q.mode!=="binary")e.q={};const s=JSON.parse(JSON.stringify(n[d.id].binary));e.q=Object.assign(s,e.q);if(e.q.lst){e.q.lst.forEach((t=>{if(!("label"in t))t.label=o(t,e.q);if(!("range"in t))t.range=r(t,e.q)}))}}function p(i){return e(this,void 0,void 0,(function*(){i.dom.cutoff_div.append("span").style("margin-right","5px").style("opacity",.5).text("Boundary value");i.dom.customBinBoundaryInput=i.dom.cutoff_div.append("input").style("width","100px").attr("type","number").style("margin-right","10px").attr("value",i.q.modeBinaryCutoffType=="normal"?i.q.lst[0].stop:i.q.modeBinaryCutoffPercentile).on("change",s);i.dom.customBinBoundaryPercentileCheckbox=d({holder:i.dom.cutoff_div,labeltext:"Use percentile",checked:i.q.modeBinaryCutoffType=="percentile",divstyle:{display:"inline-block"},callback:l});function s(){return e(this,void 0,void 0,(function*(){const e=+this.value;if(i.q.modeBinaryCutoffType=="normal"){a(e)}else if(i.q.modeBinaryCutoffType=="percentile"){if(e<1||e>99){window.alert("Invalid percentile value: enter integer between 1 and 99");return}i.q.modeBinaryCutoffPercentile=e;yield u()}else{throw"invalid modeBinaryCutoffType value"}}))}function a(e){i.q.lst[0].stop=e;i.q.lst[1].start=e;i.q.lst.forEach((e=>{e.label=o(e,i.q);e.range=r(e,i.q)}));if(!i.num_obj)throw`Missing density data [numeric.binary updateUI()]`;t(i);n(i,i.q.lst)}function l(){return e(this,void 0,void 0,(function*(){i.q.modeBinaryCutoffType=i.q.modeBinaryCutoffType=="percentile"?"normal":"percentile";if(i.q.modeBinaryCutoffType=="normal"){const e=i.q.lst[0].stop;i.dom.customBinBoundaryInput.property("value",e);a(e)}else if(i.q.modeBinaryCutoffType=="percentile"){i.dom.customBinBoundaryInput.property("value",i.q.modeBinaryCutoffPercentile);yield u()}else{throw"invalid modeBinaryCutoffType value"}}))}function u(){return e(this,void 0,void 0,(function*(){const e=yield i.opts.vocabApi.getPercentile(i.term.id,[i.q.modeBinaryCutoffPercentile],i.filter);a(e.values[0])}))}}))}function c(e){const t=e.dom.boundaryInput.property("value")=="startinclusive";const i=e.dom.boundaryInput.property("value")=="stopinclusive";const n=e.dom.bins_table.node().querySelectorAll("input");const r=e.q.lst[0].stop;const d=[{startunbounded:true,stop:r,startinclusive:t,stopinclusive:i},{start:r,startinclusive:t,stopinclusive:i,stopunbounded:true}];d.forEach(((t,i)=>{const r=n[i].value;t.label=r?r:o(t,e.q)}));return d}export{u as getHandler};
+import{_ as e}from"./tslib.es6-c3c2d88f.js";import{setDensityPlot as t}from"./density-e0aff1d0.js";import{renderBoundaryInclusionInput as i,renderBoundaryInputDivs as n}from"./numeric.discrete-b826f33b.js";import{g as o,a as r}from"./termdb.bins-a60aaa77.js";import{m as d}from"./checkbox-96437f4d.js";import{o as s}from"./termsetting-7467350f.js";import{convertViolinData as a}from"./tvs.numeric-d9108473.js";import{v as l}from"./violinRenderer-7f46e468.js";import"./app-3d14cbe4.js";import"./drag-e11d6644.js";import"./nodrag-f6c0801c.js";import"./pointer-c7475677.js";import"./toggleButtons-2144daab.js";import"./radiobutton-09bff425.js";import"path";import"./tvs.density-060d3006.js";import"./brush-06989a5e.js";import"./niceNumLabels-ef07b7ad.js";import"./axis-747c801e.js";import"./line-264f8f9e.js";import"./constant-426a1483.js";import"./basis-3870f5ba.js";function u(o){return{getPillName(e){return s(o,e)},getPillStatus(){var e;return{text:((e=o.usecase)===null||e===void 0?void 0:e.target)=="regression"?o.data.q.lst.find((e=>e.label!=o.data.refGrp)).label:"binary"}},showEditMenu(r){var d,s,f,y;return e(this,void 0,void 0,(function*(){o.num_obj={};o.num_obj.plot_size={width:500,height:100,xpad:10,ypad:20};r.selectAll("*").remove();r.append("div").style("padding","10px").style("text-align","center").html("Getting distribution data ...<br/>");const v=yield o.vocabApi.getViolinPlotData({tw:{term:o.term,q:o.q},filter:o.filter,filter0:(s=(d=o.vocabApi.state)===null||d===void 0?void 0:d.termfilter)===null||s===void 0?void 0:s.filter0,svgw:o.num_obj.plot_size.width/window.devicePixelRatio},(y=(f=o.opts).getBodyParams)===null||y===void 0?void 0:y.call(f));o.num_obj.density_data=a(v);o.dom.num_holder=r;r.selectAll("*").remove();o.dom.density_div=r.append("div");o.vr=new l(o.dom.density_div,o.num_obj.density_data,o.num_obj.plot_size.width,o.num_obj.plot_size.height);o.num_obj.svg=o.vr.svg;o.dom.bins_div=r.append("div").style("padding","4px");m(o);t(o);i(o);o.dom.cutoff_div=o.dom.bins_div.append("div").style("margin","10px");p(o);o.dom.bins_table=o.dom.bins_div.append("div").style("display","flex").style("color","rgb(136, 136, 136)").style("margin","10px").style("width","100%");o.dom.rangeAndLabelDiv=o.dom.bins_table.append("div");n(o,o.q.lst);const b=r.append("div").style("padding","3px 10px");b.append("button").style("margin","5px").html("Apply").on("click",(()=>e(this,void 0,void 0,(function*(){delete o.q.startinclusive;delete o.q.stopinclusive;delete o.q.bin_size;delete o.q.first_bin;delete o.q.last_bin;o.q.lst=c(o);o.numqByTermIdModeType[o.term.id].binary=JSON.parse(JSON.stringify(o.q));o.q.mode="binary";o.runCallback()}))));b.append("button").style("margin","5px").html("Reset").on("click",(()=>{o.q={};delete o.numqByTermIdModeType[o.term.id];u(o).showEditMenu(o.dom.num_holder)}))}))}}}function m(e){const t=e.num_obj.density_data;const i=e.q&&e.q.lst&&e.q.lst.length?e.q.lst[0].stop:undefined;const n=e.numqByTermIdModeType;if(!e.term)throw`Missing .term{} [numeric.binary, setqDefaults()]`;const d=e.term;if(!n[d.id])n[d.id]={};if(!n[d.id].binary){const o=i!==undefined?Number(i):t.maxvalue!=t.minvalue?t.minvalue+(t.maxvalue-t.minvalue)/2:t.maxvalue;n[d.id].binary={mode:"binary",type:"custom-bin",modeBinaryCutoffType:"normal",modeBinaryCutoffPercentile:50,lst:[{startunbounded:true,stopinclusive:true,stop:o.toFixed(e.term.type=="integer"?0:2)},{stopunbounded:true,start:o.toFixed(e.term.type=="integer"?0:2)}]}}if(!e.q||e.q.mode!=="binary")e.q={};const s=JSON.parse(JSON.stringify(n[d.id].binary));e.q=Object.assign(s,e.q);if(e.q.lst){e.q.lst.forEach((t=>{if(!("label"in t))t.label=o(t,e.q);if(!("range"in t))t.range=r(t,e.q)}))}}function p(i){return e(this,void 0,void 0,(function*(){i.dom.cutoff_div.append("span").style("margin-right","5px").style("opacity",.5).text("Boundary value");i.dom.customBinBoundaryInput=i.dom.cutoff_div.append("input").style("width","100px").attr("type","number").style("margin-right","10px").attr("value",i.q.modeBinaryCutoffType=="normal"?i.q.lst[0].stop:i.q.modeBinaryCutoffPercentile).on("change",s);i.dom.customBinBoundaryPercentileCheckbox=d({holder:i.dom.cutoff_div,labeltext:"Use percentile",checked:i.q.modeBinaryCutoffType=="percentile",divstyle:{display:"inline-block"},callback:l});function s(){return e(this,void 0,void 0,(function*(){const e=+this.value;if(i.q.modeBinaryCutoffType=="normal"){a(e)}else if(i.q.modeBinaryCutoffType=="percentile"){if(e<1||e>99){window.alert("Invalid percentile value: enter integer between 1 and 99");return}i.q.modeBinaryCutoffPercentile=e;yield u()}else{throw"invalid modeBinaryCutoffType value"}}))}function a(e){i.q.lst[0].stop=e;i.q.lst[1].start=e;i.q.lst.forEach((e=>{e.label=o(e,i.q);e.range=r(e,i.q)}));if(!i.num_obj)throw`Missing density data [numeric.binary updateUI()]`;t(i);n(i,i.q.lst)}function l(){return e(this,void 0,void 0,(function*(){i.q.modeBinaryCutoffType=i.q.modeBinaryCutoffType=="percentile"?"normal":"percentile";if(i.q.modeBinaryCutoffType=="normal"){const e=i.q.lst[0].stop;i.dom.customBinBoundaryInput.property("value",e);a(e)}else if(i.q.modeBinaryCutoffType=="percentile"){i.dom.customBinBoundaryInput.property("value",i.q.modeBinaryCutoffPercentile);yield u()}else{throw"invalid modeBinaryCutoffType value"}}))}function u(){return e(this,void 0,void 0,(function*(){const e=yield i.opts.vocabApi.getPercentile(i.term.id,[i.q.modeBinaryCutoffPercentile],i.filter);a(e.values[0])}))}}))}function c(e){const t=e.dom.boundaryInput.property("value")=="startinclusive";const i=e.dom.boundaryInput.property("value")=="stopinclusive";const n=e.dom.bins_table.node().querySelectorAll("input");const r=e.q.lst[0].stop;const d=[{startunbounded:true,stop:r,startinclusive:t,stopinclusive:i},{start:r,startinclusive:t,stopinclusive:i,stopunbounded:true}];d.forEach(((t,i)=>{const r=n[i].value;t.label=r?r:o(t,e.q)}));return d}export{u as getHandler};

package/dist/numeric.continuous-d27197cf.js

@@ -0,0 +1 @@
+import{_ as e}from"./tslib.es6-c3c2d88f.js";import{o as t}from"./termsetting-7467350f.js";import{convertViolinData as i}from"./tvs.numeric-d9108473.js";import{v as o}from"./violinRenderer-7f46e468.js";import{m as l}from"./checkbox-96437f4d.js";import"./app-3d14cbe4.js";import"path";import"./tvs.density-060d3006.js";import"./brush-06989a5e.js";import"./pointer-c7475677.js";import"./nodrag-f6c0801c.js";import"./niceNumLabels-ef07b7ad.js";import"./axis-747c801e.js";import"./line-264f8f9e.js";import"./constant-426a1483.js";import"./basis-3870f5ba.js";function n(n){return{getPillName(e){return t(n,e)},getPillStatus(){return{text:"continuous"}},showEditMenu(t){var r,a,p,d,c;return e(this,void 0,void 0,(function*(){s(n);t.style("padding","5px").selectAll("*").remove();const e=t.append("div");const m={width:500,height:100,xpad:10,ypad:20};const u=yield n.vocabApi.getViolinPlotData({tw:{term:n.term,q:n.q},filter:n.filter,filter0:(a=(r=n.vocabApi.state)===null||r===void 0?void 0:r.termfilter)===null||a===void 0?void 0:a.filter0,svgw:m.width/window.devicePixelRatio},(d=(p=n.opts).getBodyParams)===null||d===void 0?void 0:d.call(p));const v=i(u);const f=new o(e,v,m.width,m.height);f.render();let h;if(((c=n.usecase)===null||c===void 0?void 0:c.target)=="matrix"){h=l({holder:t,labeltext:"Convert to z-score",checked:n.q.convert2ZScore?true:false,divstyle:{display:"inline-block",padding:"3px 10px"},callback:e=>{n.q.convert2ZScore=e;if(e){g.property("value",1);delete n.q.scale}}})}const y=t.append("div").style("display","inline-block");y.append("div").style("display","inline-block").style("padding","3px 10px").html("Scale values");const g=y.append("select").on("change",(e=>{if(!n.q)throw`Missing .q{} [numeric.continuous getHandler()]`;if(e.target.value!="1"){if(h)h.property("checked",false);n.q.scale=Number(e.target.value)}else delete n.q.scale}));g.selectAll("option").data([{html:"No Scaling",value:1},{html:"Per 10",value:10},{html:"Per 100",value:100},{html:"Per 1000",value:1e3}]).enter().append("option").attr("value",(e=>e.value)).html((e=>e.html)).property("selected",(e=>"scale"in n.q&&e.value==n.q.scale));const x=t.append("div").style("padding","3px 10px");if(n.term.type=="survival"){x.append("div").style("font-size",".8em").style("margin","20px 5px 5px 5px").html(`\n\t\t\t\t\t\tDisplay survival outcomes as time to event (${n.term.unit})\n\t\t\t\t\t`)}x.append("button").style("margin","5px").html("Apply").on("click",(()=>{n.q.mode="continuous";n.runCallback()}))}))}}}function s(e){const t=e.numqByTermIdModeType;const i=e.term;if(!t[i.id])t[i.id]={};if(!t[i.id].continuous){t[i.id].continuous={mode:"continuous"}}const o=JSON.parse(JSON.stringify(t[i.id].continuous));e.q=Object.assign(o,e.q)}export{n as getHandler};

package/dist/{numeric.discrete-ed10bbc1.js → numeric.discrete-b826f33b.js}

@@ -1 +1 @@
-import{_ as t}from"./tslib.es6-c3c2d88f.js";import{W as e,k as n}from"./app-6fb77603.js";import{setDensityPlot as i}from"./density-09feb0c9.js";import{g as s,a}from"./termdb.bins-39d11f24.js";import{T as r}from"./toggleButtons-c4d6f260.js";import{m as o}from"./radiobutton-09bff425.js";import{o as l}from"./termsetting-492eefa7.js";import{convertViolinData as d}from"./tvs.numeric-aa1f892f.js";import{v as u}from"./violinRenderer-14fa200d.js";import"./drag-2e9c80bb.js";import"./nodrag-b2737073.js";import"./pointer-c7475677.js";import"path";import"./tvs.density-034b506d.js";import"./brush-9faa7ae7.js";import"./niceNumLabels-29a7c6ca.js";import"./axis-747c801e.js";import"./line-264f8f9e.js";import"./constant-426a1483.js";import"./basis-3870f5ba.js";function p(e){return{getPillName(t){return l(e,t)},getPillStatus(){var t,n;if(!e.q)throw`Missing .q{} [numeric.discrete getPillStatus()]`;const i=((t=e.q)===null||t===void 0?void 0:t.name)||((n=e.q)===null||n===void 0?void 0:n.reuseId);if(i)return{text:i};if(e.q.type=="regular-bin")return{text:"bin size="+e.q.bin_size};return{text:e.q.lst.length+" bins"}},showEditMenu(n){return t(this,void 0,void 0,(function*(){m(e,n)}))}}}function m(e,n){var s,a,r,o;return t(this,void 0,void 0,(function*(){e.num_obj={};e.num_obj.plot_size={width:500,height:100,xpad:10,ypad:20};n.selectAll("*").remove();n.append("div").style("padding","10px").style("text-align","center").html("Getting distribution data ...<br/>");try{const t=yield e.vocabApi.getViolinPlotData({tw:{term:e.term,q:{mode:"continuous"}},filter:e.filter,filter0:(a=(s=e.vocabApi.state)===null||s===void 0?void 0:s.termfilter)===null||a===void 0?void 0:a.filter0,svgw:e.num_obj.plot_size.width/window.devicePixelRatio,strokeWidth:.2},(o=(r=e.opts).getBodyParams)===null||o===void 0?void 0:o.call(r));e.num_obj.density_data=d(t)}catch(t){console.log(t)}n.selectAll("*").remove();if(e.term.type=="survival"){e.dom.discreteSur_div=n.append("div").style("padding","4px");w(e);return}e.dom.num_holder=n;e.dom.density_div=n.append("div");e.vr=new u(e.dom.density_div,e.num_obj.density_data,e.num_obj.plot_size.width,e.num_obj.plot_size.height);e.num_obj.svg=e.vr.svg;e.dom.bins_div=n.append("div").style("padding","4px");y(e);i(e);v(e);f(e);I(e)}))}function c(t){var e;if(t.q.type=="regular-bin"){if(!t.q.first_bin){t.q.first_bin={stop:Number(t.dom.first_stop_input.property("value"))}}t.q.startinclusive=t.dom.boundaryInput.property("value")=="startinclusive";t.q.stopinclusive=t.dom.boundaryInput.property("value")=="stopinclusive";const n=t.dom.bin_size_input.property("value");t.q.bin_size=Number(n);if(n.includes(".")&&!n.endsWith(".")){t.q.rounding="."+n.split(".")[1].length+"f"}else{t.q.rounding=".0f"}if(t.q.scale)delete t.q.scale;if(Number.isFinite((e=t.q.last_bin)===null||e===void 0?void 0:e.start));else{delete t.q.last_bin}t.numqByTermIdModeType[t.term.id].discrete["regular-bin"]=JSON.parse(JSON.stringify(t.q))}else if(t.term.type!=="survival"){if(t.dom.bins_table.selectAll("input").node().value){t.q.lst=b(t);t.numqByTermIdModeType[t.term.id].discrete["custom-bin"]=JSON.parse(JSON.stringify(t.q))}}t.q.mode="discrete";t.dom.tip.hide();t.runCallback()}function b(t){var e;const n=t.dom.boundaryInput.property("value")=="startinclusive";const i=t.dom.boundaryInput.property("value")=="stopinclusive";const r=t.dom.bins_table.node().querySelectorAll("input");let o;const l=t.dom.customBinBoundaryInput.property("value").split("\n").filter((t=>t!=""&&!isNaN(t)));const d=new Set(l);const u=Array.from(d).map((t=>+t)).sort(((t,e)=>t-e)).map(((e,l)=>{const d={start:+e,startinclusive:n,stopinclusive:i};if(o){delete o.stopunbounded;o.stop=d.start;const e=r[l].value;o.label=e?e:s(o,t.q,t.term.valueConversion);o.range=a(o,t.q)}o=d;return d}));if(u.length==0)return;o.stopunbounded=true;const p=(e=r[u.length])===null||e===void 0?void 0:e.value;o.label=p?p:s(o,t.q,t.term.valueConversion);o.range=a(o,t.q);u.unshift({startunbounded:true,stop:u[0].start,startinclusive:n,stopinclusive:i,label:r[0].value});if(!u[0].label)u[0].label=s(u[0],t.q,t.term.valueConversion);if(!u[0].range)u[0].range=a(u[0],t.q);return u}function y(t){var e,n;const i=t.num_obj.density_data;const r=t.numqByTermIdModeType;const o=t.term;if(!r[o.id])r[o.id]={};if(!r[o.id].discrete){const e=!Number.isFinite(i.minvalue)||!Number.isFinite(i.maxvalue)?0:i.maxvalue!=i.minvalue?i.minvalue+(i.maxvalue-i.minvalue)/2:i.maxvalue;r[o.id].discrete={"regular-bin":t.q&&t.q.type=="regular-bin"?JSON.parse(JSON.stringify(t.q)):t.opts.use_bins_less&&o.bins.less?JSON.parse(JSON.stringify(o.bins.less)):JSON.parse(JSON.stringify(o.bins.default)),"custom-bin":t.q&&t.q.type=="custom-bin"?t.q:{type:"custom-bin",mode:"discrete",lst:[{startunbounded:true,startinclusive:true,stopinclusive:false,stop:+e.toFixed(o.type=="integer"?0:2)},{stopunbounded:true,startinclusive:true,stopinclusive:false,start:+e.toFixed(o.type=="integer"?0:2)}]}};if(!r[o.id].discrete["regular-bin"].type){r[o.id].discrete["regular-bin"].type="regular-bin"}}if(t.q&&!t.q.mode)t.q.mode="discrete";if(!t.q||t.q.mode!=="discrete")t.q={};if(!t.q.type){t.q.type=((n=(e=t.term.bins)===null||e===void 0?void 0:e.default)===null||n===void 0?void 0:n.type)||"regular-bin"}const l=JSON.parse(JSON.stringify(r[o.id].discrete[t.q.type]));t.q=Object.assign(l,t.q);const d="bin_size"in t.q&&t.q.bin_size.toString();if(!t.q.rounding&&typeof d=="string"&&d.includes(".")&&!d.endsWith(".")){const e=d.split(".")[1].length;t.q.rounding="."+e+"f"}if(t.q.lst){t.q.lst.forEach((e=>{if(!("label"in e))e.label=s(e,t.q,t.term.valueConversion);if(!("range"in e))e.range=a(e,t.q)}))}}function v(t){t.dom.boundaryInclusionDiv=t.dom.bins_div.append("div").style("margin-left","5px");t.dom.boundaryInclusionDiv.append("span").style("padding","5px").style("color","rgb(136, 136, 136)").html("Boundary Inclusion");const e='<span style="font-family:Times;font-style:italic">x</span>';t.dom.boundaryInput=t.dom.boundaryInclusionDiv.append("select").style("margin-left","10px").on("change",(function(){const e=t.q.mode=="binary"?t.numqByTermIdModeType[t.term.id].binary:t.numqByTermIdModeType[t.term.id].discrete[t.q.type];e.lst=t.q.lst;if(e.type=="regular-bin"){n(e)}else{e.lst.forEach((e=>{n(e);e.label=s(e,t.q,t.term.valueConversion);e.range=a(e,t.q)}));z(t,e.lst)}function n(e){e.startinclusive=t.dom.boundaryInput.node().selectedIndex==1;e.stopinclusive=t.dom.boundaryInput.node().selectedIndex==0}}));t.dom.boundaryInput.selectAll("option").data([{value:"stopinclusive",html:"start &lt; "+e+" &le; end"},{value:"startinclusive",html:"start &le; "+e+" &lt; end"}]).enter().append("option").property("value",(t=>t.value)).property("selected",(e=>{if(t.q.type=="regular-bin")return t.q[e.value]==true;else return t.q.lst[0][e.value]==true})).html((t=>t.html))}function f(e){const n=e.dom.bins_div.append("div").style("margin","10px");if(e.term.bins.default.type=="custom-bin"){e.q.type="custom-bin";y(e);i(e);j(e,n);return}if(e.term.bins.default.type!="regular-bin")throw"self.bins.default.type is neither regular-bin or custom-bin, cannot render ui";const s=[{active:e.q.type=="regular-bin",label:"Same bin size",callback:(n,a)=>t(this,void 0,void 0,(function*(){e.q.type="regular-bin";y(e);i(e);if(!s[0].isInitialized){q(e,a.contentHolder);s[0].isInitialized=true}}))},{active:e.q.type=="custom-bin",label:"Varying bin sizes",callback:(n,a)=>t(this,void 0,void 0,(function*(){e.q.type="custom-bin";y(e);i(e);if(!s[1].isInitialized){j(e,a.contentHolder);s[1].isInitialized=true}}))}];new r({holder:n,tabs:s}).main()}function g(t,e){if(!t.term.valueConversion)return;e.append("div").style("margin-bottom","5px").style("opacity",.6).text(`Note: using values by the unit of ${t.term.valueConversion.fromUnit}.`)}function q(t,e){g(t,e);t.dom.bins_table=e.append("table");_(t,t.dom.bins_table.append("tr"));h(t,t.dom.bins_table.append("tr"));x(t,t.dom.bins_table.append("tr"))}function _(t,n){n.append("td").style("margin","5px").style("opacity",.5).text("Bin Size");const s=t.num_obj.density_data;const a=t.q.bin_size;t.dom.bin_size_input=n.append("td").append("input").attr("type","number").attr("value","rounding"in t.q?e(t.q.rounding)(t.q.bin_size):t.q.bin_size).style("margin-left","15px").style("width","100px").style("color",(()=>t.q.bin_size>Math.abs(s.maxvalue-s.minvalue)?"red":"")).on("change",(e=>{const n=Number(e.target.value);if(n<=0){window.alert("Please enter non-negative bin size.");e.target.value=a;return}if((s.maxvalue-s.minvalue)/n>100){window.alert("Bin size too small. Try setting a bigger value.");e.target.value=a;return}t.q.bin_size=n;t.dom.bin_size_input.style("color",t.q.bin_size>s.maxvalue-s.minvalue?"red":n!=a?"green":"");i(t)}))}function h(t,e){if(!t.q.first_bin)throw"missing q.first_bin";e.append("td").style("margin","5px").style("opacity",.5).text("First Bin Stop");const n=t.num_obj.density_data;const i=t.q.first_bin.stop;t.dom.first_stop_input=e.append("td").append("input").attr("type","number").property("value",i).style("width","100px").style("margin-left","15px").on("change",(e=>{const s=Number(e.target.value);if(s<n.minvalue||s>n.maxvalue){window.alert("First bin stop value out of bound.");e.target.value=i;return}if(t.q.first_bin)t.q.first_bin.stop=s;t.renderBinLines(t,t.q)}));e.append("td").append("div").style("font-size",".6em").style("opacity",.5).style("display",t.num_obj.no_density_data?"none":"block").text("Indicated by left-most red line. Drag to change.")}function x(t,e){const n=!t.q.last_bin||!Number.isFinite(t.q.last_bin.start);e.append("td").style("margin","5px").style("opacity",.5).text("Last Bin Start");const s=t.num_obj.density_data;const a=e.append("td").style("padding-left","15px").style("vertical-align","top");const r=a.append("div");o({holder:r,options:[{label:"Automatic",value:"auto",checked:n},{label:"Fixed",value:"fixed",checked:!n}],callback:e=>{if(e=="auto"){delete t.q.last_bin;l.style("display","none");t.renderBinLines(t,t.q);i(t);return}l.style("display","inline-block");if(!t.q.last_bin)t.q.last_bin={};if(t.dom.last_start_input.property("value")==""){t.dom.last_start_input.property("value",s.maxvalue)}d();i(t)}});const l=e.append("td").append("div").style("display",n?"none":"inline-block");t.dom.last_start_input=l.append("input").attr("type","number").property("value",t.q.last_bin?t.q.last_bin.start:"").style("width","100px").on("change",d);l.append("div").style("font-size",".6em").style("opacity",.5).style("display",t.num_obj.no_density_data?"none":"block").text("Indicated by right-most red line. Drag to change.");function d(){const e=Number(t.dom.last_start_input.property("value"));if(t.q.first_bin&&e<=t.q.first_bin.stop){window.alert("Last bin start cannot be smaller than first bin stop.");t.dom.last_start_input.property("value",s.maxvalue);return}if(e>s.maxvalue){window.alert("Last bin start value out of bound.");t.dom.last_start_input.property("value",s.maxvalue);return}if(!t.q.last_bin)t.q.last_bin={};t.q.last_bin.start=e;t.renderBinLines(t,t.q)}}function j(e,i){g(e,i);e.dom.bins_table=i.append("div").style("display","flex").style("width","100%");const s=e.dom.bins_table.append("div").style("margin-right","20px");e.dom.rangeAndLabelDiv=e.dom.bins_table.append("div");s.append("div").style("margin-bottom","5px").style("color","rgb(136, 136, 136)").text("Bin boundaries");e.dom.customBinBoundaryInput=s.append("textarea").style("width","100px").style("height","70px").text(e.q.lst.slice(1).map((t=>t.start)).join("\n")).on("change",a).on("keyup",(function(i){return t(this,void 0,void 0,(function*(){if(!n(i)&&i.key!=8)return;if(!e.dom.bins_table.selectAll("input").node().value)return;a.call(this)}))}));s.append("div").style("font-size",".6em").style("margin-left","1px").style("color","#858585").html("Enter numeric values </br>seperated by ENTER");function a(){const t=e.dom.bins_table.selectAll("input");t.property("value","");const n=b(e);if(n==undefined){return}const i=e.numqByTermIdModeType[e.term.id].discrete[e.q.type];if(e.q.hiddenValues)i.hiddenValues=e.q.hiddenValues;if(r(n,i.lst)){i.lst=n;e.renderBinLines(e,i)}z(e,i.lst);e.q.lst=i.lst}function r(t,e){if(t.length!=e.length)return true;if(Object.keys(t[0]).length!==Object.keys(e[0]).length)return true;for(const[n,i]of e.entries()){for(const e of Object.keys(i)){if(i[e]&&i[e]!==t[n][e]){return true}}}return false}z(e,e.q.lst)}function z(t,e){const n=t.dom.rangeAndLabelDiv;n.selectAll("*").remove();const i=n.append("div").style("display","grid").style("grid-template-columns","auto auto").style("column-gap","20px").style("align-items","center");i.append("div").style("margin-bottom","3px").style("color","rgb(136, 136, 136)").text("Range");i.append("div").style("margin-bottom","3px").style("color","rgb(136, 136, 136)").text("Bin label");for(const[t,n]of e.entries()){i.append("div").attr("name","range").html(n.range);i.append("div").append("input").attr("type","text").style("margin","2px 0px").property("value",n.label).on("change",(function(){e[t].label=this.value}))}t.dom.customBinRanges=t.dom.bins_table.selectAll('div[name="range"]').data(e);t.dom.customBinLabelInput=t.dom.bins_table.selectAll("input").data(e)}function I(t){const e=t.dom.bins_div.append("div");e.append("button").style("margin","5px").html("Apply").on("click",(()=>c(t)));e.append("button").style("margin","5px").html("Reset").on("click",(()=>{t.q={};delete t.numqByTermIdModeType[t.term.id];m(t,t.dom.num_holder)}))}function w(t){const e=t.dom.discreteSur_div.append("div");e.append("div").style("font-size",".8em").style("margin","5px").html(`\n\t\t\tDisplay survival outcomes as exit codes <br>\n\t\t`);const n=t.dom.discreteSur_div.append("div");n.append("button").style("margin","5px").html("Apply").on("click",(()=>c(t)))}export{p as getHandler,v as renderBoundaryInclusionInput,z as renderBoundaryInputDivs};
+import{_ as t}from"./tslib.es6-c3c2d88f.js";import{W as e,k as n}from"./app-3d14cbe4.js";import{setDensityPlot as i}from"./density-e0aff1d0.js";import{g as s,a}from"./termdb.bins-a60aaa77.js";import{T as r}from"./toggleButtons-2144daab.js";import{m as o}from"./radiobutton-09bff425.js";import{o as l}from"./termsetting-7467350f.js";import{convertViolinData as d}from"./tvs.numeric-d9108473.js";import{v as u}from"./violinRenderer-7f46e468.js";import"./drag-e11d6644.js";import"./nodrag-f6c0801c.js";import"./pointer-c7475677.js";import"path";import"./tvs.density-060d3006.js";import"./brush-06989a5e.js";import"./niceNumLabels-ef07b7ad.js";import"./axis-747c801e.js";import"./line-264f8f9e.js";import"./constant-426a1483.js";import"./basis-3870f5ba.js";function p(e){return{getPillName(t){return l(e,t)},getPillStatus(){var t,n;if(!e.q)throw`Missing .q{} [numeric.discrete getPillStatus()]`;const i=((t=e.q)===null||t===void 0?void 0:t.name)||((n=e.q)===null||n===void 0?void 0:n.reuseId);if(i)return{text:i};if(e.q.type=="regular-bin")return{text:"bin size="+e.q.bin_size};return{text:e.q.lst.length+" bins"}},showEditMenu(n){return t(this,void 0,void 0,(function*(){m(e,n)}))}}}function m(e,n){var s,a,r,o;return t(this,void 0,void 0,(function*(){e.num_obj={};e.num_obj.plot_size={width:500,height:100,xpad:10,ypad:20};n.selectAll("*").remove();n.append("div").style("padding","10px").style("text-align","center").html("Getting distribution data ...<br/>");try{const t=yield e.vocabApi.getViolinPlotData({tw:{term:e.term,q:{mode:"continuous"}},filter:e.filter,filter0:(a=(s=e.vocabApi.state)===null||s===void 0?void 0:s.termfilter)===null||a===void 0?void 0:a.filter0,svgw:e.num_obj.plot_size.width/window.devicePixelRatio,strokeWidth:.2},(o=(r=e.opts).getBodyParams)===null||o===void 0?void 0:o.call(r));e.num_obj.density_data=d(t)}catch(t){console.log(t)}n.selectAll("*").remove();if(e.term.type=="survival"){e.dom.discreteSur_div=n.append("div").style("padding","4px");w(e);return}e.dom.num_holder=n;e.dom.density_div=n.append("div");e.vr=new u(e.dom.density_div,e.num_obj.density_data,e.num_obj.plot_size.width,e.num_obj.plot_size.height);e.num_obj.svg=e.vr.svg;e.dom.bins_div=n.append("div").style("padding","4px");y(e);i(e);v(e);f(e);I(e)}))}function c(t){var e;if(t.q.type=="regular-bin"){if(!t.q.first_bin){t.q.first_bin={stop:Number(t.dom.first_stop_input.property("value"))}}t.q.startinclusive=t.dom.boundaryInput.property("value")=="startinclusive";t.q.stopinclusive=t.dom.boundaryInput.property("value")=="stopinclusive";const n=t.dom.bin_size_input.property("value");t.q.bin_size=Number(n);if(n.includes(".")&&!n.endsWith(".")){t.q.rounding="."+n.split(".")[1].length+"f"}else{t.q.rounding=".0f"}if(t.q.scale)delete t.q.scale;if(Number.isFinite((e=t.q.last_bin)===null||e===void 0?void 0:e.start));else{delete t.q.last_bin}t.numqByTermIdModeType[t.term.id].discrete["regular-bin"]=JSON.parse(JSON.stringify(t.q))}else if(t.term.type!=="survival"){if(t.dom.bins_table.selectAll("input").node().value){t.q.lst=b(t);t.numqByTermIdModeType[t.term.id].discrete["custom-bin"]=JSON.parse(JSON.stringify(t.q))}}t.q.mode="discrete";t.dom.tip.hide();t.runCallback()}function b(t){var e;const n=t.dom.boundaryInput.property("value")=="startinclusive";const i=t.dom.boundaryInput.property("value")=="stopinclusive";const r=t.dom.bins_table.node().querySelectorAll("input");let o;const l=t.dom.customBinBoundaryInput.property("value").split("\n").filter((t=>t!=""&&!isNaN(t)));const d=new Set(l);const u=Array.from(d).map((t=>+t)).sort(((t,e)=>t-e)).map(((e,l)=>{const d={start:+e,startinclusive:n,stopinclusive:i};if(o){delete o.stopunbounded;o.stop=d.start;const e=r[l].value;o.label=e?e:s(o,t.q,t.term.valueConversion);o.range=a(o,t.q)}o=d;return d}));if(u.length==0)return;o.stopunbounded=true;const p=(e=r[u.length])===null||e===void 0?void 0:e.value;o.label=p?p:s(o,t.q,t.term.valueConversion);o.range=a(o,t.q);u.unshift({startunbounded:true,stop:u[0].start,startinclusive:n,stopinclusive:i,label:r[0].value});if(!u[0].label)u[0].label=s(u[0],t.q,t.term.valueConversion);if(!u[0].range)u[0].range=a(u[0],t.q);return u}function y(t){var e,n;const i=t.num_obj.density_data;const r=t.numqByTermIdModeType;const o=t.term;if(!r[o.id])r[o.id]={};if(!r[o.id].discrete){const e=!Number.isFinite(i.minvalue)||!Number.isFinite(i.maxvalue)?0:i.maxvalue!=i.minvalue?i.minvalue+(i.maxvalue-i.minvalue)/2:i.maxvalue;r[o.id].discrete={"regular-bin":t.q&&t.q.type=="regular-bin"?JSON.parse(JSON.stringify(t.q)):t.opts.use_bins_less&&o.bins.less?JSON.parse(JSON.stringify(o.bins.less)):JSON.parse(JSON.stringify(o.bins.default)),"custom-bin":t.q&&t.q.type=="custom-bin"?t.q:{type:"custom-bin",mode:"discrete",lst:[{startunbounded:true,startinclusive:true,stopinclusive:false,stop:+e.toFixed(o.type=="integer"?0:2)},{stopunbounded:true,startinclusive:true,stopinclusive:false,start:+e.toFixed(o.type=="integer"?0:2)}]}};if(!r[o.id].discrete["regular-bin"].type){r[o.id].discrete["regular-bin"].type="regular-bin"}}if(t.q&&!t.q.mode)t.q.mode="discrete";if(!t.q||t.q.mode!=="discrete")t.q={};if(!t.q.type){t.q.type=((n=(e=t.term.bins)===null||e===void 0?void 0:e.default)===null||n===void 0?void 0:n.type)||"regular-bin"}const l=JSON.parse(JSON.stringify(r[o.id].discrete[t.q.type]));t.q=Object.assign(l,t.q);const d="bin_size"in t.q&&t.q.bin_size.toString();if(!t.q.rounding&&typeof d=="string"&&d.includes(".")&&!d.endsWith(".")){const e=d.split(".")[1].length;t.q.rounding="."+e+"f"}if(t.q.lst){t.q.lst.forEach((e=>{if(!("label"in e))e.label=s(e,t.q,t.term.valueConversion);if(!("range"in e))e.range=a(e,t.q)}))}}function v(t){t.dom.boundaryInclusionDiv=t.dom.bins_div.append("div").style("margin-left","5px");t.dom.boundaryInclusionDiv.append("span").style("padding","5px").style("color","rgb(136, 136, 136)").html("Boundary Inclusion");const e='<span style="font-family:Times;font-style:italic">x</span>';t.dom.boundaryInput=t.dom.boundaryInclusionDiv.append("select").style("margin-left","10px").on("change",(function(){const e=t.q.mode=="binary"?t.numqByTermIdModeType[t.term.id].binary:t.numqByTermIdModeType[t.term.id].discrete[t.q.type];e.lst=t.q.lst;if(e.type=="regular-bin"){n(e)}else{e.lst.forEach((e=>{n(e);e.label=s(e,t.q,t.term.valueConversion);e.range=a(e,t.q)}));z(t,e.lst)}function n(e){e.startinclusive=t.dom.boundaryInput.node().selectedIndex==1;e.stopinclusive=t.dom.boundaryInput.node().selectedIndex==0}}));t.dom.boundaryInput.selectAll("option").data([{value:"stopinclusive",html:"start &lt; "+e+" &le; end"},{value:"startinclusive",html:"start &le; "+e+" &lt; end"}]).enter().append("option").property("value",(t=>t.value)).property("selected",(e=>{if(t.q.type=="regular-bin")return t.q[e.value]==true;else return t.q.lst[0][e.value]==true})).html((t=>t.html))}function f(e){const n=e.dom.bins_div.append("div").style("margin","10px");if(e.term.bins.default.type=="custom-bin"){e.q.type="custom-bin";y(e);i(e);j(e,n);return}if(e.term.bins.default.type!="regular-bin")throw"self.bins.default.type is neither regular-bin or custom-bin, cannot render ui";const s=[{active:e.q.type=="regular-bin",label:"Same bin size",callback:(n,a)=>t(this,void 0,void 0,(function*(){e.q.type="regular-bin";y(e);i(e);if(!s[0].isInitialized){q(e,a.contentHolder);s[0].isInitialized=true}}))},{active:e.q.type=="custom-bin",label:"Varying bin sizes",callback:(n,a)=>t(this,void 0,void 0,(function*(){e.q.type="custom-bin";y(e);i(e);if(!s[1].isInitialized){j(e,a.contentHolder);s[1].isInitialized=true}}))}];new r({holder:n,tabs:s}).main()}function g(t,e){if(!t.term.valueConversion)return;e.append("div").style("margin-bottom","5px").style("opacity",.6).text(`Note: using values by the unit of ${t.term.valueConversion.fromUnit}.`)}function q(t,e){g(t,e);t.dom.bins_table=e.append("table");_(t,t.dom.bins_table.append("tr"));h(t,t.dom.bins_table.append("tr"));x(t,t.dom.bins_table.append("tr"))}function _(t,n){n.append("td").style("margin","5px").style("opacity",.5).text("Bin Size");const s=t.num_obj.density_data;const a=t.q.bin_size;t.dom.bin_size_input=n.append("td").append("input").attr("type","number").attr("value","rounding"in t.q?e(t.q.rounding)(t.q.bin_size):t.q.bin_size).style("margin-left","15px").style("width","100px").style("color",(()=>t.q.bin_size>Math.abs(s.maxvalue-s.minvalue)?"red":"")).on("change",(e=>{const n=Number(e.target.value);if(n<=0){window.alert("Please enter non-negative bin size.");e.target.value=a;return}if((s.maxvalue-s.minvalue)/n>100){window.alert("Bin size too small. Try setting a bigger value.");e.target.value=a;return}t.q.bin_size=n;t.dom.bin_size_input.style("color",t.q.bin_size>s.maxvalue-s.minvalue?"red":n!=a?"green":"");i(t)}))}function h(t,e){if(!t.q.first_bin)throw"missing q.first_bin";e.append("td").style("margin","5px").style("opacity",.5).text("First Bin Stop");const n=t.num_obj.density_data;const i=t.q.first_bin.stop;t.dom.first_stop_input=e.append("td").append("input").attr("type","number").property("value",i).style("width","100px").style("margin-left","15px").on("change",(e=>{const s=Number(e.target.value);if(s<n.minvalue||s>n.maxvalue){window.alert("First bin stop value out of bound.");e.target.value=i;return}if(t.q.first_bin)t.q.first_bin.stop=s;t.renderBinLines(t,t.q)}));e.append("td").append("div").style("font-size",".6em").style("opacity",.5).style("display",t.num_obj.no_density_data?"none":"block").text("Indicated by left-most red line. Drag to change.")}function x(t,e){const n=!t.q.last_bin||!Number.isFinite(t.q.last_bin.start);e.append("td").style("margin","5px").style("opacity",.5).text("Last Bin Start");const s=t.num_obj.density_data;const a=e.append("td").style("padding-left","15px").style("vertical-align","top");const r=a.append("div");o({holder:r,options:[{label:"Automatic",value:"auto",checked:n},{label:"Fixed",value:"fixed",checked:!n}],callback:e=>{if(e=="auto"){delete t.q.last_bin;l.style("display","none");t.renderBinLines(t,t.q);i(t);return}l.style("display","inline-block");if(!t.q.last_bin)t.q.last_bin={};if(t.dom.last_start_input.property("value")==""){t.dom.last_start_input.property("value",s.maxvalue)}d();i(t)}});const l=e.append("td").append("div").style("display",n?"none":"inline-block");t.dom.last_start_input=l.append("input").attr("type","number").property("value",t.q.last_bin?t.q.last_bin.start:"").style("width","100px").on("change",d);l.append("div").style("font-size",".6em").style("opacity",.5).style("display",t.num_obj.no_density_data?"none":"block").text("Indicated by right-most red line. Drag to change.");function d(){const e=Number(t.dom.last_start_input.property("value"));if(t.q.first_bin&&e<=t.q.first_bin.stop){window.alert("Last bin start cannot be smaller than first bin stop.");t.dom.last_start_input.property("value",s.maxvalue);return}if(e>s.maxvalue){window.alert("Last bin start value out of bound.");t.dom.last_start_input.property("value",s.maxvalue);return}if(!t.q.last_bin)t.q.last_bin={};t.q.last_bin.start=e;t.renderBinLines(t,t.q)}}function j(e,i){g(e,i);e.dom.bins_table=i.append("div").style("display","flex").style("width","100%");const s=e.dom.bins_table.append("div").style("margin-right","20px");e.dom.rangeAndLabelDiv=e.dom.bins_table.append("div");s.append("div").style("margin-bottom","5px").style("color","rgb(136, 136, 136)").text("Bin boundaries");e.dom.customBinBoundaryInput=s.append("textarea").style("width","100px").style("height","70px").text(e.q.lst.slice(1).map((t=>t.start)).join("\n")).on("change",a).on("keyup",(function(i){return t(this,void 0,void 0,(function*(){if(!n(i)&&i.key!=8)return;if(!e.dom.bins_table.selectAll("input").node().value)return;a.call(this)}))}));s.append("div").style("font-size",".6em").style("margin-left","1px").style("color","#858585").html("Enter numeric values </br>seperated by ENTER");function a(){const t=e.dom.bins_table.selectAll("input");t.property("value","");const n=b(e);if(n==undefined){return}const i=e.numqByTermIdModeType[e.term.id].discrete[e.q.type];if(e.q.hiddenValues)i.hiddenValues=e.q.hiddenValues;if(r(n,i.lst)){i.lst=n;e.renderBinLines(e,i)}z(e,i.lst);e.q.lst=i.lst}function r(t,e){if(t.length!=e.length)return true;if(Object.keys(t[0]).length!==Object.keys(e[0]).length)return true;for(const[n,i]of e.entries()){for(const e of Object.keys(i)){if(i[e]&&i[e]!==t[n][e]){return true}}}return false}z(e,e.q.lst)}function z(t,e){const n=t.dom.rangeAndLabelDiv;n.selectAll("*").remove();const i=n.append("div").style("display","grid").style("grid-template-columns","auto auto").style("column-gap","20px").style("align-items","center");i.append("div").style("margin-bottom","3px").style("color","rgb(136, 136, 136)").text("Range");i.append("div").style("margin-bottom","3px").style("color","rgb(136, 136, 136)").text("Bin label");for(const[t,n]of e.entries()){i.append("div").attr("name","range").html(n.range);i.append("div").append("input").attr("type","text").style("margin","2px 0px").property("value",n.label).on("change",(function(){e[t].label=this.value}))}t.dom.customBinRanges=t.dom.bins_table.selectAll('div[name="range"]').data(e);t.dom.customBinLabelInput=t.dom.bins_table.selectAll("input").data(e)}function I(t){const e=t.dom.bins_div.append("div");e.append("button").style("margin","5px").html("Apply").on("click",(()=>c(t)));e.append("button").style("margin","5px").html("Reset").on("click",(()=>{t.q={};delete t.numqByTermIdModeType[t.term.id];m(t,t.dom.num_holder)}))}function w(t){const e=t.dom.discreteSur_div.append("div");e.append("div").style("font-size",".8em").style("margin","5px").html(`\n\t\t\tDisplay survival outcomes as exit codes <br>\n\t\t`);const n=t.dom.discreteSur_div.append("div");n.append("button").style("margin","5px").html("Apply").on("click",(()=>c(t)))}export{p as getHandler,v as renderBoundaryInclusionInput,z as renderBoundaryInputDivs};

package/dist/{numeric.spline-a35cfbf0.js → numeric.spline-b3968b77.js}

@@ -1 +1 @@
-import{_ as t}from"./tslib.es6-c3c2d88f.js";import{setDensityPlot as e}from"./density-09feb0c9.js";import{k as n}from"./app-6fb77603.js";import{o}from"./termsetting-492eefa7.js";import{convertViolinData as i}from"./tvs.numeric-aa1f892f.js";import{v as s}from"./violinRenderer-14fa200d.js";import"./termdb.bins-39d11f24.js";import"./drag-2e9c80bb.js";import"./nodrag-b2737073.js";import"./pointer-c7475677.js";import"path";import"./tvs.density-034b506d.js";import"./brush-9faa7ae7.js";import"./niceNumLabels-29a7c6ca.js";import"./axis-747c801e.js";import"./line-264f8f9e.js";import"./constant-426a1483.js";import"./basis-3870f5ba.js";function l(n){return{getPillName(t){return o(n,t)},getPillStatus(){return{text:"cubic spline"}},showEditMenu(o){var l,p,a,m;return t(this,void 0,void 0,(function*(){n.num_obj={};n.num_obj.plot_size={width:500,height:100,xpad:10,ypad:20};o.selectAll("*").remove();o.append("div").style("padding","10px").style("text-align","center").html("Getting distribution data ...<br/>");try{const t=yield n.vocabApi.getViolinPlotData({tw:{term:n.term,q:n.q},filter:n.filter,filter0:(p=(l=n.vocabApi.state)===null||l===void 0?void 0:l.termfilter)===null||p===void 0?void 0:p.filter0,svgw:n.num_obj.plot_size.width/window.devicePixelRatio},(m=(a=n.opts).getBodyParams)===null||m===void 0?void 0:m.call(a));n.num_obj.density_data=i(t)}catch(t){console.log(t)}o.selectAll("*").remove();n.dom.density_div=o.append("div");n.vr=new s(n.dom.density_div,n.num_obj.density_data,n.num_obj.plot_size.width,n.num_obj.plot_size.height);n.num_obj.svg=n.vr.svg;n.dom.num_holder=o;n.dom.knots_div=o.append("div").style("padding","5px");yield d(n);e(n);r(n);f(n)}))}}}function d(e){return t(this,void 0,void 0,(function*(){const t=e.numqByTermIdModeType;const n=e.term;if(!t[n.id])t[n.id]={};if(!t[n.id]["spline"]){t[n.id]["spline"]={mode:"spline",knots:[]}}const o=JSON.parse(JSON.stringify(t[n.id]["spline"]));e.q=Object.assign(o,e.q);if(!e.q.knots.length){const t=4;yield u(e,t);e.numqByTermIdModeType[e.term.id]["spline"].knots=e.q.knots}}))}function r(t){const e=t.dom.knots_div;p(t,e);c(t,e)}function p(e,o){e.dom.custom_knots_div=o.append("div");e.dom.custom_knots_div.append("div").style("display","inline-block").style("vertical-align","top").style("padding","3px 15px").style("font-weight","normal").style("color","rgb(136, 136, 136)").html("Knots");e.dom.customKnotsInput=e.dom.custom_knots_div.append("div").style("display","inline-block").style("padding","3px 15px").style("padding-left","5px").append("textarea").style("height","100px").style("width","100px").text(e.q.knots.map((t=>t.value)).join("\n")).on("change",i).on("keyup",(function(e){return t(this,void 0,void 0,(function*(){if(!n(e)&&e.key!=8)return;i.call(this)}))}));e.dom.custom_knots_div.append("div").style("display","inline-block").style("vertical-align","top").style("font-size",".7em").style("padding","3px 15px").style("padding-left","5px").style("color","rgb(136, 136, 136)").html(`Enter knot values, one knot per line.</br> \n\t\t\tAdjust knot by dragging on the vertical line.</br>\n\t\t \tOr autocompute knots from below.`);function i(){const t=m(e);const n=e.q;if(s(t,n.knots)){n.knots=t;e.renderBinLines(e,n)}e.q=n}function s(t,e){if(t.length!=e.length)return true;if(Object.keys(t[0]).length!==Object.keys(e[0]).length)return true;for(const[n,o]of e.entries()){for(const e of Object.keys(o)){if(o[e]&&o[e]!==t[n][e]){return true}}}return false}}function a(t){t.dom.customKnotsInput.property("value",t.q.knots.map((t=>t.value)).join("\n"))}function m(t){const e=t.dom.customKnotsInput.property("value").split("\n").filter((t=>t!="")).map((t=>+t)).sort(((t,e)=>t-e)).map((t=>{const e={value:+t};return e}));return e}function c(n,o){const i=4;const s=i;n.dom.knot_select_div=o.append("div");n.dom.knot_select_div.append("div").style("display","inline-block").style("margin-left","15px").style("color","rgb(136, 136, 136)").html("Autocompute");const l=n.dom.knot_select_div.append("select").style("margin-left","10px").style("margin-bottom","7px");for(let t=s-1;t<s+5;t++){l.append("option").attr("value",t).html(t)}const d=n.q.knots&&n.q.knots.length?n.q.knots.length:s;l.node().value=d;n.dom.knot_select_div.append("div").style("display","inline-block").style("margin-left","10px").style("color","rgb(136, 136, 136)").html("knots");n.dom.knot_select_div.append("button").style("margin","15px").html("Compute").on("click",(()=>t(this,void 0,void 0,(function*(){const t=Number.parseInt(l.node().value);let o=Number.parseInt(l.node().value);while(n.q.knots.length!=t){yield u(n,o);o=o+1}a(n);e(n)}))));n.dom.knot_select_div.append("div").style("display","inline-block").style("font-size",".7em").style("padding","3px 15px").style("padding-left","5px").style("color","rgb(136, 136, 136)").html("Will overwrite existing values.")}function u(e,n){return t(this,void 0,void 0,(function*(){const t=n-2;const o=e.term;const i=e.q.knots=[];const s=[5];const l=(90/(t+1)).toFixed(0);for(let e=1;e<t+1;e++){s.push(e*l)}s.push(95);const d=yield v(e,s);for(const t of d){i.push({value:t.toFixed(o.type=="integer"?0:2)})}}))}function v(e,n){return t(this,void 0,void 0,(function*(){const t=yield e.vocabApi.getPercentile(e.term.id,n,e.filter);if(t.error||!t.values.length||!t.values.every((t=>Number.isFinite(t))))throw"cannot get median value: "+(t.error||"no data");const o=[...new Set(t.values)];return o}))}function f(t){const e=t.dom.knots_div.append("div");e.append("button").style("margin","5px").html("Apply").on("click",(()=>y(t)));e.append("button").style("margin","5px").html("Reset").on("click",(()=>{t.q={};delete t.numqByTermIdModeType[t.term.id];t.handler=l(t);t.handler.showEditMenu(t.dom.num_holder)}))}function y(t){t.q.mode="spline";t.dom.tip.hide();t.runCallback()}export{l as getHandler};
+import{_ as t}from"./tslib.es6-c3c2d88f.js";import{setDensityPlot as e}from"./density-e0aff1d0.js";import{k as n}from"./app-3d14cbe4.js";import{o}from"./termsetting-7467350f.js";import{convertViolinData as i}from"./tvs.numeric-d9108473.js";import{v as s}from"./violinRenderer-7f46e468.js";import"./termdb.bins-a60aaa77.js";import"./drag-e11d6644.js";import"./nodrag-f6c0801c.js";import"./pointer-c7475677.js";import"path";import"./tvs.density-060d3006.js";import"./brush-06989a5e.js";import"./niceNumLabels-ef07b7ad.js";import"./axis-747c801e.js";import"./line-264f8f9e.js";import"./constant-426a1483.js";import"./basis-3870f5ba.js";function l(n){return{getPillName(t){return o(n,t)},getPillStatus(){return{text:"cubic spline"}},showEditMenu(o){var l,p,a,m;return t(this,void 0,void 0,(function*(){n.num_obj={};n.num_obj.plot_size={width:500,height:100,xpad:10,ypad:20};o.selectAll("*").remove();o.append("div").style("padding","10px").style("text-align","center").html("Getting distribution data ...<br/>");try{const t=yield n.vocabApi.getViolinPlotData({tw:{term:n.term,q:n.q},filter:n.filter,filter0:(p=(l=n.vocabApi.state)===null||l===void 0?void 0:l.termfilter)===null||p===void 0?void 0:p.filter0,svgw:n.num_obj.plot_size.width/window.devicePixelRatio},(m=(a=n.opts).getBodyParams)===null||m===void 0?void 0:m.call(a));n.num_obj.density_data=i(t)}catch(t){console.log(t)}o.selectAll("*").remove();n.dom.density_div=o.append("div");n.vr=new s(n.dom.density_div,n.num_obj.density_data,n.num_obj.plot_size.width,n.num_obj.plot_size.height);n.num_obj.svg=n.vr.svg;n.dom.num_holder=o;n.dom.knots_div=o.append("div").style("padding","5px");yield d(n);e(n);r(n);y(n)}))}}}function d(e){return t(this,void 0,void 0,(function*(){const t=e.numqByTermIdModeType;const n=e.term;if(!t[n.id])t[n.id]={};if(!t[n.id]["spline"]){t[n.id]["spline"]={mode:"spline",knots:[]}}const o=JSON.parse(JSON.stringify(t[n.id]["spline"]));e.q=Object.assign(o,e.q);if(!e.q.knots.length){const t=4;yield u(e,t);e.numqByTermIdModeType[e.term.id]["spline"].knots=e.q.knots}}))}function r(t){const e=t.dom.knots_div;p(t,e);c(t,e)}function p(e,o){e.dom.custom_knots_div=o.append("div");e.dom.custom_knots_div.append("div").style("display","inline-block").style("vertical-align","top").style("padding","3px 15px").style("font-weight","normal").style("color","rgb(136, 136, 136)").html("Knots");e.dom.customKnotsInput=e.dom.custom_knots_div.append("div").style("display","inline-block").style("padding","3px 15px").style("padding-left","5px").append("textarea").style("height","100px").style("width","100px").text(e.q.knots.map((t=>t.value)).join("\n")).on("change",i).on("keyup",(function(e){return t(this,void 0,void 0,(function*(){if(!n(e)&&e.key!=8)return;i.call(this)}))}));e.dom.custom_knots_div.append("div").style("display","inline-block").style("vertical-align","top").style("font-size",".7em").style("padding","3px 15px").style("padding-left","5px").style("color","rgb(136, 136, 136)").html(`Enter knot values, one knot per line.</br> \n\t\t\tAdjust knot by dragging on the vertical line.</br>\n\t\t \tOr autocompute knots from below.`);function i(){const t=m(e);const n=e.q;if(s(t,n.knots)){n.knots=t;e.renderBinLines(e,n)}e.q=n}function s(t,e){if(t.length!=e.length)return true;if(Object.keys(t[0]).length!==Object.keys(e[0]).length)return true;for(const[n,o]of e.entries()){for(const e of Object.keys(o)){if(o[e]&&o[e]!==t[n][e]){return true}}}return false}}function a(t){t.dom.customKnotsInput.property("value",t.q.knots.map((t=>t.value)).join("\n"))}function m(t){const e=t.dom.customKnotsInput.property("value").split("\n").filter((t=>t!="")).map((t=>+t)).sort(((t,e)=>t-e)).map((t=>{const e={value:+t};return e}));return e}function c(n,o){const i=4;const s=i;n.dom.knot_select_div=o.append("div");n.dom.knot_select_div.append("div").style("display","inline-block").style("margin-left","15px").style("color","rgb(136, 136, 136)").html("Autocompute");const l=n.dom.knot_select_div.append("select").style("margin-left","10px").style("margin-bottom","7px");for(let t=s-1;t<s+5;t++){l.append("option").attr("value",t).html(t)}const d=n.q.knots&&n.q.knots.length?n.q.knots.length:s;l.node().value=d;n.dom.knot_select_div.append("div").style("display","inline-block").style("margin-left","10px").style("color","rgb(136, 136, 136)").html("knots");n.dom.knot_select_div.append("button").style("margin","15px").html("Compute").on("click",(()=>t(this,void 0,void 0,(function*(){const t=Number.parseInt(l.node().value);let o=Number.parseInt(l.node().value);while(n.q.knots.length!=t){yield u(n,o);o=o+1}a(n);e(n)}))));n.dom.knot_select_div.append("div").style("display","inline-block").style("font-size",".7em").style("padding","3px 15px").style("padding-left","5px").style("color","rgb(136, 136, 136)").html("Will overwrite existing values.")}function u(e,n){return t(this,void 0,void 0,(function*(){const t=n-2;const o=e.term;const i=e.q.knots=[];const s=[5];const l=(90/(t+1)).toFixed(0);for(let e=1;e<t+1;e++){s.push(e*l)}s.push(95);const d=yield v(e,s);for(const t of d){i.push({value:t.toFixed(o.type=="integer"?0:2)})}}))}function v(e,n){return t(this,void 0,void 0,(function*(){const t=yield e.vocabApi.getPercentile(e.term.id,n,e.filter);if(t.error||!t.values.length||!t.values.every((t=>Number.isFinite(t))))throw"cannot get median value: "+(t.error||"no data");const o=[...new Set(t.values)];return o}))}function y(t){const e=t.dom.knots_div.append("div");e.append("button").style("margin","5px").html("Apply").on("click",(()=>f(t)));e.append("button").style("margin","5px").html("Reset").on("click",(()=>{t.q={};delete t.numqByTermIdModeType[t.term.id];t.handler=l(t);t.handler.showEditMenu(t.dom.num_holder)}))}function f(t){t.q.mode="spline";t.dom.tip.hide();t.runCallback()}export{l as getHandler};

package/dist/{numeric.toggle-2f98d6e5.js → numeric.toggle-ab8b79be.js}

@@ -1 +1 @@
-import{_ as e}from"./tslib.es6-c3c2d88f.js";import{T as i}from"./toggleButtons-c4d6f260.js";import{o as t,c as n,s as r}from"./termsetting-492eefa7.js";import{P as s}from"./app-6fb77603.js";import"path";function o(e){switch(e){case"./numeric.binary.ts":return import("./numeric.binary-f382cc98.js");case"./numeric.continuous.ts":return import("./numeric.continuous-6feb34a7.js");case"./numeric.discrete.ts":return import("./numeric.discrete-ed10bbc1.js");case"./numeric.spline.ts":return import("./numeric.spline-a35cfbf0.js");case"./numeric.toggle.ts":return Promise.resolve().then((function(){return a}));default:return new Promise((function(i,t){(typeof queueMicrotask==="function"?queueMicrotask:setTimeout)(t.bind(null,new Error("Unknown variable dynamic import: "+e)))}))}}function u(n){return e(this,void 0,void 0,(function*(){n.tabCallback=(i,t)=>e(this,void 0,void 0,(function*(){if(!t)return;if(!n.q)throw`Missing .q{} [numeric.toggle getHandler()]`;n.q.mode=t.mode;const e=`numeric.${t.mode}`;if(!n.handlerByType[e]){const i=yield o(`./numeric.${t.mode}.ts`);n.handlerByType[e]=yield i.getHandler(n)}t.isRendered=true;yield n.handlerByType[e].showEditMenu(t.contentHolder)}));const r=[];if(n.opts.numericEditMenuVersion.includes("continuous")){r.push({mode:"continuous",label:n.term.type=="survival"?"Time to Event":"Continuous",callback:n.tabCallback})}if(n.opts.numericEditMenuVersion.includes("discrete")){r.push({mode:"discrete",label:n.term.type=="survival"?"Exit code":"Discrete",callback:n.tabCallback})}if(n.opts.numericEditMenuVersion.includes("spline")){r.push({mode:"spline",label:"Cubic spline",callback:n.tabCallback})}if(n.opts.numericEditMenuVersion.includes("binary")){r.push({mode:"binary",label:"Binary",callback:n.tabCallback})}return{getPillName(e){return t(n,e)},getPillStatus(){var e;if(!n.q)throw`Missing .q{} [numeric.toggle getPillStatus()]`;let i=n.q.mode;if(n.q.mode=="spline"){i="cubic spline"}else if(n.q.mode=="discrete"){if(((e=n.usecase)===null||e===void 0?void 0:e.target)=="regression"){i="discrete"}else if(n.q.type=="custom-bin"){i=n.q.lst.length+" bins"}else{i="bin size="+n.q.bin_size}}return{text:i}},showEditMenu(t){return e(this,void 0,void 0,(function*(){for(const e of r){delete e.isRendered;e.active=n.q.mode==e.mode||e.mode=="continuous"&&!n.q.mode}const e=t.append("div").style("padding","10px");e.append("span").html("Use as&nbsp;");new i({holder:e.append("div").style("display","inline-block"),contentHolder:t.append("div"),noTopContentStyle:true,tabs:r}).main()}))}}}))}function l(i,t,o){return e(this,void 0,void 0,(function*(){if(!i.q.mode&&!(o===null||o===void 0?void 0:o.mode))i.q.mode="discrete";if(i.q.mode!=="continuous"&&!c(i.q)){s(i.q,i.term.bins.default)}if(o){o.isAtomic=true;const e=o;const r=o;if(e.preferredBins=="median"){const r=e;if(!r.type||r.type!="custom-bin")throw".type must be custom-bin when .preferredBins=median";const s=yield t.getPercentile(i.term.id,[50]);if(!s.values)throw".values[] missing from vocab.getPercentile()";const u=n(s.values[0]);if(!Number.isFinite(u))throw"median value not a number";const l=JSON.parse(JSON.stringify(o));delete l.preferredBins;i.q=l;i.q.lst=[{startunbounded:true,stop:u,stopinclusive:false,label:"<"+u},{start:u,startinclusive:true,stopunbounded:true,label:"≥"+u}]}else if(r.preferredBins=="less"||r.preferredBins=="default"){i.q=JSON.parse(JSON.stringify(i.term.bins[r.preferredBins]))}else{s(i.q,o)}}r(i.q,i.term)}))}function c(e){if(e.type=="custom-bin"){if(!Array.isArray(e.lst))return false;return true}if(Number.isFinite(e.bin_size)&&e.first_bin){if(Number.isFinite(e.first_bin.stop))return true}return false}var a=Object.freeze({__proto__:null,getHandler:u,fillTW:l});export{l as fillTW,u as getHandler};
+import{_ as e}from"./tslib.es6-c3c2d88f.js";import{T as i}from"./toggleButtons-2144daab.js";import{o as t,c as n,s as r}from"./termsetting-7467350f.js";import{P as s}from"./app-3d14cbe4.js";import"path";function o(e){switch(e){case"./numeric.binary.ts":return import("./numeric.binary-88bf9e0d.js");case"./numeric.continuous.ts":return import("./numeric.continuous-d27197cf.js");case"./numeric.discrete.ts":return import("./numeric.discrete-b826f33b.js");case"./numeric.spline.ts":return import("./numeric.spline-b3968b77.js");case"./numeric.toggle.ts":return Promise.resolve().then((function(){return a}));default:return new Promise((function(i,t){(typeof queueMicrotask==="function"?queueMicrotask:setTimeout)(t.bind(null,new Error("Unknown variable dynamic import: "+e)))}))}}function u(n){return e(this,void 0,void 0,(function*(){n.tabCallback=(i,t)=>e(this,void 0,void 0,(function*(){if(!t)return;if(!n.q)throw`Missing .q{} [numeric.toggle getHandler()]`;n.q.mode=t.mode;const e=`numeric.${t.mode}`;if(!n.handlerByType[e]){const i=yield o(`./numeric.${t.mode}.ts`);n.handlerByType[e]=yield i.getHandler(n)}t.isRendered=true;yield n.handlerByType[e].showEditMenu(t.contentHolder)}));const r=[];if(n.opts.numericEditMenuVersion.includes("continuous")){r.push({mode:"continuous",label:n.term.type=="survival"?"Time to Event":"Continuous",callback:n.tabCallback})}if(n.opts.numericEditMenuVersion.includes("discrete")){r.push({mode:"discrete",label:n.term.type=="survival"?"Exit code":"Discrete",callback:n.tabCallback})}if(n.opts.numericEditMenuVersion.includes("spline")){r.push({mode:"spline",label:"Cubic spline",callback:n.tabCallback})}if(n.opts.numericEditMenuVersion.includes("binary")){r.push({mode:"binary",label:"Binary",callback:n.tabCallback})}return{getPillName(e){return t(n,e)},getPillStatus(){var e;if(!n.q)throw`Missing .q{} [numeric.toggle getPillStatus()]`;let i=n.q.mode;if(n.q.mode=="spline"){i="cubic spline"}else if(n.q.mode=="discrete"){if(((e=n.usecase)===null||e===void 0?void 0:e.target)=="regression"){i="discrete"}else if(n.q.type=="custom-bin"){i=n.q.lst.length+" bins"}else{i="bin size="+n.q.bin_size}}return{text:i}},showEditMenu(t){return e(this,void 0,void 0,(function*(){for(const e of r){delete e.isRendered;e.active=n.q.mode==e.mode||e.mode=="continuous"&&!n.q.mode}const e=t.append("div").style("padding","10px");e.append("span").html("Use as&nbsp;");new i({holder:e.append("div").style("display","inline-block"),contentHolder:t.append("div"),noTopContentStyle:true,tabs:r}).main()}))}}}))}function l(i,t,o){return e(this,void 0,void 0,(function*(){if(!i.q.mode&&!(o===null||o===void 0?void 0:o.mode))i.q.mode="discrete";if(i.q.mode!=="continuous"&&!c(i.q)){s(i.q,i.term.bins.default)}if(o){o.isAtomic=true;const e=o;const r=o;if(e.preferredBins=="median"){const r=e;if(!r.type||r.type!="custom-bin")throw".type must be custom-bin when .preferredBins=median";const s=yield t.getPercentile(i.term.id,[50]);if(!s.values)throw".values[] missing from vocab.getPercentile()";const u=n(s.values[0]);if(!Number.isFinite(u))throw"median value not a number";const l=JSON.parse(JSON.stringify(o));delete l.preferredBins;i.q=l;i.q.lst=[{startunbounded:true,stop:u,stopinclusive:false,label:"<"+u},{start:u,startinclusive:true,stopunbounded:true,label:"≥"+u}]}else if(r.preferredBins=="less"||r.preferredBins=="default"){i.q=JSON.parse(JSON.stringify(i.term.bins[r.preferredBins]))}else{s(i.q,o)}}r(i.q,i.term)}))}function c(e){if(e.type=="custom-bin"){if(!Array.isArray(e.lst))return false;return true}if(Number.isFinite(e.bin_size)&&e.first_bin){if(Number.isFinite(e.first_bin.stop))return true}return false}var a=Object.freeze({__proto__:null,getHandler:u,fillTW:l});export{l as fillTW,u as getHandler};

package/dist/{oncomatrix-c0b2d635.js → oncomatrix-5f4326a8.js}

@@ -1 +1 @@
-import{appInit as t}from"./plot.app-2a805759.js";import{d as e,P as r,b as i}from"./app-6fb77603.js";import{f as s}from"./termsetting-492eefa7.js";import{v as a}from"./FilterRxComp-02e68f1b.js";import"./recover-299ffdb3.js";import"./FilterStateless-16a33070.js";import"./app-d215327f.js";import"./termInfo-491b10af.js";import"./tslib.es6-c3c2d88f.js";import"./toggleButtons-c4d6f260.js";import"path";import"./table-0daf2b89.js";import"./partjson.esm-b3f1fc21.js";import"./termdb.bins-39d11f24.js";import"./genesearch-ffd88bf2.js";import"./checkbox-96437f4d.js";import"./rehydrateFilter-12d118cb.js";const o="hg38";const n="GDC";async function p(i,p,f){const m=f[o];try{if(!m)throw o+" missing";const p=i.settings||{};if(typeof p!="object")throw"arg.settings{} not object";if(!p.matrix)p.matrix={};if(typeof p.matrix!="object")throw"arg.settings.matrix{} not object";if(!p.matrix.geneFilter)p.matrix.geneFilter="CGC";if(!Number.isInteger(p.matrix.maxGenes))p.matrix.maxGenes=50;if(i.filter0&&typeof i.filter0!="object")throw"arg.filter0 not object";const f=await a({state:{vocab:{genome:o,dslabel:n}}});f.getTermdbConfig();const c=await t({holder:e(i.holder).select(".sja_root_holder"),genome:m,state:{genome:o,dslabel:n,termfilter:{filter0:i.filter0},plots:[{chartType:"geneset",toolName:"OncoMatrix",settings:{maxGenes:p.matrix.maxGenes,geneFilter:p.matrix.geneFilter}}]},app:i.opts?.app||{},geneset:{mode:"geneVariant",genome:m,genes:i.genes,reactsTo(t){if(t.type.startsWith("plot_"))return t.id===this.id;if(t.type.startsWith("filter"))return true;if(t.type=="app_refresh")return true},showWaitMessage(t){t.style("margin","20px");t.append("div").text("Loading the top mutated genes in the current cohort...")},async callback(t,e){if(!t)return;g=t;if(!d){const t=c.getState().plots.find((t=>t.chartType=="matrix"));if(t)d=c.getComponents(`plots.${t.id}`)}const r=[...i.termgroups||[],{lst:e}];if(d){c.dispatch({type:"plot_edit",id:d.id,config:{termgroups:r}})}else{c.dispatch({type:"plot_create",config:{chartType:"matrix",termgroups:r,divideBy:i.divideBy||undefined,settings:p}})}}},recover:{undoHtml:"Undo",redoHtml:"Redo",resetHtml:"Restore",hide(t){return t.plots[0]?.chartType!="matrix"},adjustTrackedState:t=>{const e=structuredClone(t);delete e.termfilter.filter0;if(e.plots){for(const t of e.plots){if(!t.termgroups)continue;for(const e of t.termgroups){if(!e.lst)continue;for(const t of e.lst){if(!t?.term)continue;delete t.term.category2samplecount;delete t.term.values}}}}return e}},matrix:r({reactsTo(t){if(t.type.startsWith("plot_"))return t.id===this.id;if(t.type.startsWith("filter"))return true;if(t.type=="app_refresh")return true},customInputs:{genes:[{label:`Maximum # Genes`,title:"Limit the number of displayed genes",type:"number",chartType:"matrix",settingsKey:"maxGenes",callback:async t=>{for(const t in i.opts?.app?.callbacks){if(t.startsWith("preDispatch")){i.opts?.app?.callbacks[t]();break}}const e=await l(i,{maxGenes:t,geneFilter:p.matrix.geneFilter},f);u.update({termgroups:[{lst:e}],settings:{matrix:{maxGenes:t}}})}}]},callbacks:{"firstRender.gdcMatrix":async t=>{t.on("firstRender.gdcMatrix",null);if(!g)return;c.dispatch({type:"plot_delete",id:g.id});g=undefined}}},i.opts?.matrix||{})});let d,g;const u={update:async t=>{if(!d){const t=c.getState().plots.find((t=>t.chartType=="matrix"));if(t)d=c.getComponents(`plots.${t.id}`)}if(t.genes){c.dispatch({type:"plot_edit",id:d.id,config:{termgroups:[{lst:await Promise.all(t.genes.map((async t=>await s({term:{gene:t.gene,type:"geneVariant",name:t.gene}},f))))}]}})}else if("filter0"in t){c.dispatch({type:"filter_replace",filter0:t.filter0})}else if(d){c.dispatch({type:"plot_edit",id:d.id,config:t})}}};return u}catch(t){throw t}}async function l(t,e,r){const a={maxGenes:e.maxGenes,geneFilter:e.geneFilter};if(t.filter0)a.filter0=t.filter0;const o=await i("gdc/topMutatedGenes",{body:a});if(o.error)throw o.error;if(!o.genes)return;return await Promise.all(o.genes.map((async t=>await s({term:{gene:t.gene,type:"geneVariant"}},r))))}export{p as init};
+import{appInit as t}from"./plot.app-4dc30ebc.js";import{d as e,P as r,b as i}from"./app-3d14cbe4.js";import{f as s}from"./termsetting-7467350f.js";import{v as a}from"./FilterRxComp-e8de560c.js";import"./recover-4888c2a9.js";import"./FilterStateless-75514d37.js";import"./app-bd9f016b.js";import"./termInfo-e16f90f2.js";import"./tslib.es6-c3c2d88f.js";import"./toggleButtons-2144daab.js";import"path";import"./table-be2a9975.js";import"./partjson.esm-b3f1fc21.js";import"./termdb.bins-a60aaa77.js";import"./genesearch-0587c713.js";import"./checkbox-96437f4d.js";import"./rehydrateFilter-12d118cb.js";const o="hg38";const n="GDC";async function p(i,p,l){const m=l[o];try{if(!m)throw o+" missing";const p=i.settings||{};if(typeof p!="object")throw"arg.settings{} not object";if(!p.matrix)p.matrix={};if(typeof p.matrix!="object")throw"arg.settings.matrix{} not object";if(!p.matrix.geneFilter)p.matrix.geneFilter="CGC";if(!Number.isInteger(p.matrix.maxGenes))p.matrix.maxGenes=50;if(i.filter0&&typeof i.filter0!="object")throw"arg.filter0 not object";const l=await a({state:{vocab:{genome:o,dslabel:n}}});l.getTermdbConfig();const f=await t({holder:e(i.holder).select(".sja_root_holder"),genome:m,state:{genome:o,dslabel:n,termfilter:{filter0:i.filter0},plots:[{chartType:"geneset",toolName:"OncoMatrix",settings:{maxGenes:p.matrix.maxGenes,geneFilter:p.matrix.geneFilter}}]},app:i.opts?.app||{},geneset:{mode:"geneVariant",genome:m,genes:i.genes,reactsTo(t){if(t.type.startsWith("plot_"))return t.id===this.id;if(t.type.startsWith("filter"))return true;if(t.type=="app_refresh")return true},showWaitMessage(t){t.style("margin","20px");t.append("div").text("Loading the top mutated genes in the current cohort...")},async callback(t,e){if(!t)return;g=t;if(!d){const t=f.getState().plots.find((t=>t.chartType=="matrix"));if(t)d=f.getComponents(`plots.${t.id}`)}const r=[...i.termgroups||[],{lst:e}];if(d){f.dispatch({type:"plot_edit",id:d.id,config:{termgroups:r}})}else{f.dispatch({type:"plot_create",config:{chartType:"matrix",termgroups:r,divideBy:i.divideBy||undefined,settings:p}})}}},recover:{undoHtml:"Undo",redoHtml:"Redo",resetHtml:"Restore",hide(t){return t.plots[0]?.chartType!="matrix"},adjustTrackedState:t=>{const e=structuredClone(t);delete e.termfilter.filter0;if(e.plots){for(const t of e.plots){if(!t.termgroups)continue;for(const e of t.termgroups){if(!e.lst)continue;for(const t of e.lst){if(!t?.term)continue;delete t.term.category2samplecount;delete t.term.values}}}}return e}},matrix:r({reactsTo(t){if(t.type.startsWith("plot_"))return t.id===this.id;if(t.type.startsWith("filter"))return true;if(t.type=="app_refresh")return true},customInputs:{genes:[{label:`Maximum # Genes`,title:"Limit the number of displayed genes",type:"number",chartType:"matrix",settingsKey:"maxGenes",callback:async t=>{for(const t in i.opts?.app?.callbacks){if(t.startsWith("preDispatch")){i.opts?.app?.callbacks[t]();break}}const e=await c(i,{maxGenes:t,geneFilter:p.matrix.geneFilter},l);u.update({termgroups:[{lst:e}],settings:{matrix:{maxGenes:t}}})}}]},callbacks:{"firstRender.gdcMatrix":async t=>{t.on("firstRender.gdcMatrix",null);if(!g)return;f.dispatch({type:"plot_delete",id:g.id});g=undefined}}},i.opts?.matrix||{})});let d,g;const u={update:async t=>{if(!d){const t=f.getState().plots.find((t=>t.chartType=="matrix"));if(t)d=f.getComponents(`plots.${t.id}`)}if(t.genes){f.dispatch({type:"plot_edit",id:d.id,config:{termgroups:[{lst:await Promise.all(t.genes.map((async t=>await s({term:{gene:t.gene,type:"geneVariant",name:t.gene}},l))))}]}})}else if("filter0"in t){f.dispatch({type:"filter_replace",filter0:t.filter0})}else if(d){f.dispatch({type:"plot_edit",id:d.id,config:t})}}};return u}catch(t){throw t}}async function c(t,e,r){const a={maxGenes:e.maxGenes,geneFilter:e.geneFilter};if(t.filter0)a.filter0=t.filter0;const o=await i("gdc/topMutatedGenes",{body:a});if(o.error)throw o.error;if(!o.genes)return;return await Promise.all(o.genes.map((async t=>await s({term:{gene:t.gene,type:"geneVariant"}},r))))}export{p as init};