@sjcrh/proteinpaint-client 2.213.0 → 2.215.0

package/dist/singleCellNumericValue.unit.spec-SYSMD5IW.js

@@ -1,416 +0,0 @@
-import {
-  SearchHandler
-} from "./chunk-BUX5YSDF.js";
-import {
-  require_tape
-} from "./chunk-PJYCTAMC.js";
-import "./chunk-QI6X4V43.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-7HPICVA4.js";
-import "./chunk-7XZA2XR2.js";
-import "./chunk-DD3DWHUY.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-YU7CVG4B.js";
-import "./chunk-HH5JKOE6.js";
-import "./chunk-RU2UHH7M.js";
-import {
-  TermTypeGroups
-} from "./chunk-57Z4VYLM.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-6XKAOSQE.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import {
-  select_default
-} from "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import {
-  __toESM
-} from "./chunk-HS5PO5ZQ.js";
-
-// termdb/handlers/test/singleCellNumericValue.unit.spec.ts
-var import_tape = __toESM(require_tape(), 1);
-function getHolder() {
-  return select_default("body").append("div");
-}
-function createMockApp(termType2terms = []) {
-  return {
-    vocabApi: {
-      termdbConfig: {
-        termType2terms: {
-          [TermTypeGroups.SINGLECELL_NUMERIC_VALUE]: termType2terms
-        }
-      }
-    }
-  };
-}
-function createMockUsecase(config = {}) {
-  return {
-    specialCase: {
-      config
-    }
-  };
-}
-function createMockTerm(overrides = {}) {
-  return {
-    name: "test_term",
-    plot: "UMAP",
-    sample: void 0,
-    ...overrides
-  };
-}
-function createValidOpts(overrides = {}) {
-  return {
-    callback: () => {
-    },
-    app: createMockApp(),
-    holder: getHolder(),
-    usecase: createMockUsecase(),
-    ...overrides
-  };
-}
-(0, import_tape.default)("\n", function(test) {
-  test.comment("-***- termdb/handlers/singleCellNumericValue -***-");
-  test.end();
-});
-(0, import_tape.default)("constructor: creates SearchHandler instance", function(test) {
-  const handler = new SearchHandler();
-  test.ok(handler instanceof SearchHandler, "creates instance of SearchHandler");
-  test.equal(handler.callback, void 0, "callback starts as undefined");
-  test.equal(handler.app, void 0, "app starts as undefined");
-  test.end();
-});
-(0, import_tape.default)("validateOpts: accepts valid opts object", function(test) {
-  const handler = new SearchHandler();
-  const opts = createValidOpts();
-  test.doesNotThrow(
-    () => handler.validateOpts(opts),
-    "validateOpts accepts valid options"
-  );
-  test.end();
-});
-(0, import_tape.default)("validateOpts: throws error for missing callback", function(test) {
-  const handler = new SearchHandler();
-  const opts = createValidOpts({ callback: null });
-  test.throws(
-    () => handler.validateOpts(opts),
-    /callback is required/,
-    "throws error when callback is null"
-  );
-  test.end();
-});
-(0, import_tape.default)("validateOpts: throws error for missing app", function(test) {
-  const handler = new SearchHandler();
-  const opts = createValidOpts({ app: null });
-  test.throws(
-    () => handler.validateOpts(opts),
-    /app is required/,
-    "throws error when app is null"
-  );
-  test.end();
-});
-(0, import_tape.default)("validateOpts: throws error for missing holder", function(test) {
-  const handler = new SearchHandler();
-  const opts = createValidOpts({ holder: null });
-  test.throws(
-    () => handler.validateOpts(opts),
-    /holder is required/,
-    "throws error when holder is null"
-  );
-  test.end();
-});
-(0, import_tape.default)("validateOpts: throws error for missing usecase", function(test) {
-  const handler = new SearchHandler();
-  const opts = createValidOpts({ usecase: null });
-  test.throws(
-    () => handler.validateOpts(opts),
-    /usecase is required/,
-    "throws error when usecase is null"
-  );
-  test.end();
-});
-(0, import_tape.default)("makeTerm: creates term from raw term", function(test) {
-  const handler = new SearchHandler();
-  const rawTerm = createMockTerm({ sample: "sample1" });
-  const result = handler.makeTerm(rawTerm, {});
-  test.equal(result.name, "test_term", "preserves term name");
-  test.equal(result.plot, "UMAP", "preserves UMAP");
-  test.equal(result.sample, "sample1", "preserves original sample");
-  test.end();
-});
-(0, import_tape.default)("makeTerm: adds sample from usecase config when term missing sample", function(test) {
-  const handler = new SearchHandler();
-  const rawTerm = createMockTerm({ sample: void 0 });
-  const usecaseConfig = { sample: "usecase_sample" };
-  const result = handler.makeTerm(rawTerm, usecaseConfig);
-  test.equal(result.sample, "usecase_sample", "uses sample from usecase config");
-  test.end();
-});
-(0, import_tape.default)("makeTerm: does not override term sample with usecase config sample", function(test) {
-  const handler = new SearchHandler();
-  const rawTerm = createMockTerm({ sample: "term_sample" });
-  const usecaseConfig = { sample: "usecase_sample" };
-  const result = handler.makeTerm(rawTerm, usecaseConfig);
-  test.equal(result.sample, "term_sample", "preserves term sample over usecase config");
-  test.end();
-});
-(0, import_tape.default)("makeTerm: does not mutate original term", function(test) {
-  const handler = new SearchHandler();
-  const rawTerm = createMockTerm({ sample: void 0 });
-  const usecaseConfig = { sample: "usecase_sample" };
-  const result = handler.makeTerm(rawTerm, usecaseConfig);
-  test.equal(rawTerm.sample, void 0, "original term is not mutated");
-  test.notEqual(result, rawTerm, "returns new term object");
-  test.end();
-});
-(0, import_tape.default)("init: throws error when no terms in termType2terms", async function(test) {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const opts = createValidOpts({
-    holder,
-    app: createMockApp([])
-    // empty terms array
-  });
-  await handler.init(opts);
-  const errorDiv = holder.select("div");
-  const hasError = errorDiv.node() !== null;
-  test.ok(hasError, "displays error message when no terms available");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("init: displays error with correct message format", async function(test) {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const opts = createValidOpts({
-    holder,
-    app: createMockApp([])
-  });
-  await handler.init(opts);
-  const divCount = holder.selectAll("div").size();
-  test.ok(divCount > 0, "error message appended to holder");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("init: sets callback and app on instance", async function(test) {
-  const handler = new SearchHandler();
-  const callback = () => {
-  };
-  const app = createMockApp([createMockTerm()]);
-  const opts = createValidOpts({ callback, app });
-  await handler.init(opts);
-  test.equal(handler.callback, callback, "callback set on instance");
-  test.equal(handler.app, app, "app set on instance");
-  if (test["_ok"]) opts.holder.remove();
-  test.end();
-});
-(0, import_tape.default)("init: creates term divs for available terms", async function(test) {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const terms = [
-    createMockTerm({ name: "term1", plot: "plot1" }),
-    createMockTerm({ name: "term2", plot: "plot2" })
-  ];
-  const opts = createValidOpts({
-    holder,
-    app: createMockApp(terms)
-  });
-  await handler.init(opts);
-  const termLabels = holder.selectAll(".termlabel");
-  test.equal(termLabels.size(), 2, "creates label for each term");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("init: filters terms by plots when sample.plots provided", async function(test) {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const terms = [
-    createMockTerm({ name: "term1", plot: "plot1" }),
-    createMockTerm({ name: "term2", plot: "plot2" }),
-    createMockTerm({ name: "term3", plot: "plot3" })
-  ];
-  const usecaseConfig = {
-    sample: {
-      plots: ["plot1", "plot2"]
-    }
-  };
-  const opts = createValidOpts({
-    holder,
-    app: createMockApp(terms),
-    usecase: createMockUsecase(usecaseConfig)
-  });
-  await handler.init(opts);
-  const termLabels = holder.selectAll(".termlabel");
-  test.equal(termLabels.size(), 2, "displays only terms matching filtered plots");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("init: filters terms by usecase.name when provided", async function(test) {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const terms = [
-    createMockTerm({ name: "term1", plot: "plot1" }),
-    createMockTerm({ name: "term2", plot: "plot2" }),
-    createMockTerm({ name: "term3", plot: "plot2" })
-  ];
-  const usecaseConfig = {
-    name: "plot2"
-  };
-  const opts = createValidOpts({
-    holder,
-    app: createMockApp(terms),
-    usecase: createMockUsecase(usecaseConfig)
-  });
-  await handler.init(opts);
-  const termLabels = holder.selectAll(".termlabel");
-  test.equal(termLabels.size(), 2, "displays only terms matching usecase.name");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("init: displays all terms when no filter provided", async function(test) {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const terms = [
-    createMockTerm({ name: "term1", plot: "plot1" }),
-    createMockTerm({ name: "term2", plot: "plot2" }),
-    createMockTerm({ name: "term3", plot: "plot3" })
-  ];
-  const opts = createValidOpts({
-    holder,
-    app: createMockApp(terms)
-  });
-  await handler.init(opts);
-  const termLabels = holder.selectAll(".termlabel");
-  test.equal(termLabels.size(), 3, "displays all terms when no filter applied");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("init: label includes plot name for multiple plots or no meta", async function(test) {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const terms = [
-    createMockTerm({ name: "term1", plot: "plot1" })
-  ];
-  const usecaseConfig = {
-    sample: {
-      plots: ["plot1", "plot2"]
-      // multiple plots
-    }
-  };
-  const opts = createValidOpts({
-    holder,
-    app: createMockApp(terms),
-    usecase: createMockUsecase(usecaseConfig)
-  });
-  await handler.init(opts);
-  const label = holder.select(".termlabel").text();
-  test.ok(label.includes("term1"), "label includes term name");
-  test.ok(label.includes("plot1"), "label includes plot name for multiple plots");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("init: label excludes plot name when single plot or isMeta", async function(test) {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const terms = [
-    createMockTerm({ name: "term1", plot: "plot1" })
-  ];
-  const usecaseConfig = {
-    sample: {
-      plots: ["plot1"],
-      isMetaResult: true
-    }
-  };
-  const opts = createValidOpts({
-    holder,
-    app: createMockApp(terms),
-    usecase: createMockUsecase(usecaseConfig)
-  });
-  await handler.init(opts);
-  const label = holder.select(".termlabel").text();
-  test.equal(label, "term1", "label is just term name for single plot with meta");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("init: callback invoked with correct term on click", async function(test) {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const callbackResult = { captured: null };
-  const callback = (term) => {
-    callbackResult.captured = term;
-  };
-  const terms = [
-    createMockTerm({ name: "term1", plot: "plot1", sample: "sample1" })
-  ];
-  const opts = createValidOpts({
-    holder,
-    callback,
-    app: createMockApp(terms)
-  });
-  await handler.init(opts);
-  const labelNode = holder.select(".termlabel").node();
-  if (labelNode) {
-    const clickEvent = new MouseEvent("click");
-    labelNode.dispatchEvent(clickEvent);
-  }
-  test.ok(callbackResult.captured, "callback was invoked");
-  test.equal(callbackResult.captured?.name, "term1", "callback receives correct term");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("init: callback term includes sample from usecase if not in term", async function(test) {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const callbackResult = { captured: null };
-  const callback = (term) => {
-    callbackResult.captured = term;
-  };
-  const terms = [
-    createMockTerm({ name: "term1", plot: "plot1", sample: void 0 })
-  ];
-  const usecaseConfig = {
-    sample: "usecase_sample"
-  };
-  const opts = createValidOpts({
-    holder,
-    callback,
-    app: createMockApp(terms),
-    usecase: createMockUsecase(usecaseConfig)
-  });
-  await handler.init(opts);
-  const labelNode = holder.select(".termlabel").node();
-  if (labelNode) {
-    const clickEvent = new MouseEvent("click");
-    labelNode.dispatchEvent(clickEvent);
-  }
-  test.equal(callbackResult.captured?.sample, "usecase_sample", "callback term includes usecase sample");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-(0, import_tape.default)("init: applies termdiv and pill styling classes", async function(test) {
-  const handler = new SearchHandler();
-  const holder = getHolder();
-  const terms = [createMockTerm()];
-  const opts = createValidOpts({
-    holder,
-    app: createMockApp(terms)
-  });
-  await handler.init(opts);
-  const termdiv = holder.select(".termdiv");
-  const label = holder.select(".termlabel");
-  test.ok(termdiv.node() !== null, "applies termdiv class");
-  test.ok(label.classed("sja_filter_tag_btn"), "applies sja_filter_tag_btn class");
-  test.ok(label.classed("sja_tree_click_term"), "applies sja_tree_click_term class");
-  test.ok(label.classed("ts_pill"), "applies ts_pill class");
-  if (test["_ok"]) holder.remove();
-  test.end();
-});
-//# sourceMappingURL=singleCellNumericValue.unit.spec-SYSMD5IW.js.map

package/dist/singleCellPlot-3V47EUB4.js

@@ -1,48 +0,0 @@
-import {
-  componentInit,
-  getContourImage,
-  getDefaultSingleCellSettings,
-  getMouseNDC,
-  getPlotConfig,
-  scatterInit
-} from "./chunk-B2FSMLYK.js";
-import "./chunk-JH73IL4C.js";
-import "./chunk-GDJUSLDV.js";
-import "./chunk-4E2F26CC.js";
-import "./chunk-72PLI3GC.js";
-import "./chunk-PRZWSBMA.js";
-import "./chunk-QI6X4V43.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-7HPICVA4.js";
-import "./chunk-7XZA2XR2.js";
-import "./chunk-DD3DWHUY.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-YU7CVG4B.js";
-import "./chunk-HH5JKOE6.js";
-import "./chunk-RU2UHH7M.js";
-import "./chunk-57Z4VYLM.js";
-import "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-6XKAOSQE.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-export {
-  componentInit,
-  getContourImage,
-  getDefaultSingleCellSettings,
-  getMouseNDC,
-  getPlotConfig,
-  scatterInit
-};
-//# sourceMappingURL=singleCellPlot-3V47EUB4.js.map

package/dist/singlecell-AFGFONXY.js

@@ -1,81 +0,0 @@
-import {
-  appInit
-} from "./chunk-JQ3JE2F6.js";
-import "./chunk-QZXUHBUV.js";
-import "./chunk-4E2F26CC.js";
-import "./chunk-SKMFMGCD.js";
-import "./chunk-QI6X4V43.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import "./chunk-7HPICVA4.js";
-import "./chunk-7XZA2XR2.js";
-import "./chunk-DD3DWHUY.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-3CIL7KH7.js";
-import "./chunk-T4XPCSLP.js";
-import "./chunk-YU7CVG4B.js";
-import "./chunk-HH5JKOE6.js";
-import "./chunk-RU2UHH7M.js";
-import "./chunk-57Z4VYLM.js";
-import {
-  copyMerge
-} from "./chunk-HBNB5TRH.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-7X6NF7NI.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-Z2ZITHT4.js";
-import "./chunk-4OLM3KSB.js";
-import "./chunk-6XKAOSQE.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// gdc/singlecell.ts
-var gdcGenome = "hg38";
-var gdcDslabel = "GDC";
-async function init(arg, holder, genomes) {
-  const plotAppApi = await appInit({
-    holder,
-    state: {
-      genome: gdcGenome,
-      dslabel: gdcDslabel,
-      termfilter: { filter0: arg.filter0 },
-      plots: arg.state?.plots || [{ chartType: "singleCellPlot" }]
-    },
-    genome: genomes[gdcGenome],
-    app: copyMerge({}, arg.opts?.app || {}),
-    opts: {
-      singleCellPlot: arg.opts?.singleCellPlot || {}
-    }
-  });
-  const api = {
-    update: async (updateArg) => {
-      if (!plotAppApi) return;
-      if ("filter0" in updateArg) {
-        plotAppApi.dispatch({
-          type: "app_refresh",
-          subactions: [
-            {
-              type: "filter_replace",
-              filter0: updateArg.filter0
-            }
-          ]
-        });
-      } else {
-        plotAppApi.dispatch({
-          type: "plot_edit",
-          id: plotAppApi.getState().plots[0].id,
-          config: updateArg
-        });
-      }
-    }
-  };
-  return api;
-}
-export {
-  init
-};
-//# sourceMappingURL=singlecell-AFGFONXY.js.map