@sjcrh/proteinpaint-client 2.206.1 → 2.207.0

package/dist/chunk-UO5AU7IW.js

@@ -0,0 +1,216 @@
+import {
+  Tabs,
+  addGeneSearchbox,
+  make_one_checkbox,
+  make_radios
+} from "./chunk-NQDF3U2C.js";
+import {
+  Menu
+} from "./chunk-ELJX3QIQ.js";
+import {
+  termType2label
+} from "./chunk-HZ3TCGBK.js";
+import {
+  TermTypeGroups
+} from "./chunk-IZUYLFOX.js";
+
+// termdb/handlers/pseudobulk.ts
+function isSamePseudobulkSelection(a, b) {
+  return a.type === b.type && a.assay === b.assay && a.memberId === b.memberId && a.id === b.id;
+}
+var SearchHandler = class {
+  async init(opts) {
+    const pseudobulkTerms = this.validateOpts(opts);
+    this.callback = opts.callback;
+    this.app = opts.app;
+    this.genome = opts.genomeObj;
+    const holder = opts.holder.append("div").style("padding", "10px 0px");
+    this.multiSelect = opts?.usecase?.target == "aggregateMatrix";
+    this.selectedTerm = void 0;
+    this.map = this.buildRenderingDataMap(pseudobulkTerms);
+    this.renderPseudobulkSearch(holder);
+  }
+  validateOpts(opts) {
+    if (!opts) throw new Error("opts is required");
+    if (!opts.app) throw new Error("opts.app is required");
+    if (!opts.holder) throw new Error("opts.holder is required");
+    if (opts.genomeObj == null || typeof opts.genomeObj !== "object") throw new Error("genomeObj is required");
+    if (!opts.callback) throw new Error("opts.callback is required");
+    const pseudobulkTerms = opts.app.vocabApi.termdbConfig?.termType2terms?.[TermTypeGroups.PSEUDOBULK];
+    if (!pseudobulkTerms) {
+      throw new Error(
+        `termType2terms[${TermTypeGroups.PSEUDOBULK}]:[] is required in termdbConfig for pseudobulk handler`
+      );
+    }
+    return pseudobulkTerms;
+  }
+  /** Builds a map from assay to memberId to terms */
+  buildRenderingDataMap(pseudobulkTerms) {
+    const map = /* @__PURE__ */ new Map();
+    for (const term of pseudobulkTerms) {
+      const { assay, memberId } = term;
+      if (!map.has(assay)) map.set(assay, /* @__PURE__ */ new Map());
+      const assayMap = map.get(assay);
+      if (!assayMap.has(memberId)) assayMap.set(memberId, []);
+      assayMap.get(memberId).push(term);
+    }
+    return map;
+  }
+  /** If more than one assay, render tabs for each assay. Member IDs within
+   * an assay are rendered as tabs when there is more than one. */
+  renderPseudobulkSearch(holder) {
+    if (!this.map || this.map.size < 1) throw new Error("map is not initialized");
+    if (this.map.size === 1) {
+      const label = termType2label(this.map.keys().next().value);
+      holder.append("div").style("padding-bottom", "10px").text("Single-cell pseudobulk " + label);
+      this.renderMemberIdsByAssay(holder.append("div"), this.map);
+      return;
+    }
+    const tabs = this.buildTabsOpts(this.map);
+    new Tabs({ holder, tabs, tabsPosition: "vertical" }).main();
+  }
+  buildTabsOpts(map) {
+    const tabs = [];
+    for (const [key, valuesMap] of map.entries()) {
+      const label = termType2label(key);
+      tabs.push({
+        label,
+        active: false,
+        callback: (_, tab) => {
+          this.renderMemberIdsByAssay(tab.contentHolder, /* @__PURE__ */ new Map([[key, valuesMap]]));
+        }
+      });
+    }
+    return tabs;
+  }
+  renderMemberIdsByAssay(holder, map) {
+    const memberIdMap = map.values().next().value;
+    holder.selectAll("*").remove();
+    this.renderTermdByMemberId(holder, memberIdMap);
+  }
+  renderTermdByMemberId(holder, memberIdMap) {
+    const layout = holder.append("div").style("display", "flex").style("align-items", "flex-start").style("gap", "30px");
+    const pseudoTermsWrapper = layout.append("div").attr("data-testid", "sjpp-pseudobulk-terms-wrapper");
+    const geneSearchWrapper = layout.append("div").attr("data-testid", "sjpp-pseudobulk-gene-search-wrapper");
+    this.renderPseudobulkTerms(pseudoTermsWrapper, memberIdMap, geneSearchWrapper);
+  }
+  renderPseudobulkTerms(holder, memberIdMap, geneSearchHolder) {
+    if (memberIdMap.size === 1) {
+      const [memberId, terms] = memberIdMap.entries().next().value;
+      if (this.multiSelect) {
+        this.renderCategoriesAsTerms(holder, terms);
+      } else this.renderCategoryRadios(holder, memberId, terms, geneSearchHolder);
+      return;
+    }
+    const memberEntries = Array.from(memberIdMap.entries());
+    const tabs = memberEntries.map(([memberId, terms]) => ({
+      label: memberId,
+      active: false,
+      testid: `sjpp-pseudobulk-member-${memberId}`,
+      callback: (_, tab) => {
+        geneSearchHolder.selectAll("*").remove();
+        tab.contentHolder.selectAll("*").remove();
+        if (this.multiSelect) this.renderCategoriesAsTerms(tab.contentHolder, terms);
+        else this.renderCategoryRadios(tab.contentHolder, memberId, terms, geneSearchHolder);
+      }
+    }));
+    new Tabs({ holder, tabs, tabsPosition: "vertical" }).main();
+  }
+  renderCategoryRadios(holder, memberId, terms, geneSearchHolder) {
+    if (!terms || terms.length < 1) throw new Error("No terms found for memberId");
+    const options = terms.map((term) => ({
+      label: term.name,
+      value: term.id,
+      checked: false,
+      testid: `sjpp-pseudobulk-category-${term.id}`
+    }));
+    make_radios({
+      holder,
+      inputName: `sjpp-pseudobulk-category-radios-${memberId}`,
+      options,
+      styles: { display: "block", padding: "3px 5px" },
+      callback: (value) => {
+        const term = terms.find((term2) => term2.id == value);
+        if (!term) throw new Error(`No pseudobulk term found for category ${value}`);
+        this.selectedTerm = term;
+        this.renderGeneSelection(geneSearchHolder);
+      }
+    });
+  }
+  renderGeneSelection(holder) {
+    holder.selectAll("*").remove();
+    const geneSearch = addGeneSearchbox({
+      tip: new Menu({ padding: "0px" }),
+      genome: this.genome,
+      row: holder,
+      searchOnly: "gene",
+      callback: () => {
+        if (!geneSearch.geneSymbol) throw new Error("No gene selected");
+        if (!this.selectedTerm) throw new Error("No pseudobulk cell type selected");
+        this.callback(createPseudobulkTerm(this.selectedTerm, geneSearch.geneSymbol));
+      }
+    });
+  }
+  /** Mimics the style and functionality of pills created in tree.js.
+   * Returns the term object(s) from termdbConfig.termType2terms.[TermTypeGroups.PSEUDOBULK]
+   * without the gene. */
+  renderCategoriesAsTerms(holder, terms) {
+    holder.style("padding", "0px 10px");
+    const isSelected = (term) => this.app.getState().selectedTerms.some((selected) => isSamePseudobulkSelection(selected, term));
+    const setSelected = async (term, selected) => {
+      const selectedTerms = this.app.getState().selectedTerms;
+      if (selectedTerms.some((selectedTerm) => isSamePseudobulkSelection(selectedTerm, term)) === selected) return;
+      const nextSelectedTerms = selected ? [...selectedTerms, term] : selectedTerms.filter((selectedTerm) => !isSamePseudobulkSelection(selectedTerm, term));
+      await this.app.dispatch({ type: "app_refresh", state: { selectedTerms: nextSelectedTerms } });
+    };
+    const selectAll = make_one_checkbox({
+      holder,
+      labeltext: "Select all",
+      divstyle: { opacity: "0.7" },
+      callback: async () => {
+        const checked = selectAll.property("checked");
+        const selectedTerms = this.app.getState().selectedTerms;
+        const nextSelectedTerms = checked ? [
+          ...selectedTerms,
+          ...terms.filter(
+            (term) => !selectedTerms.some((selected) => isSamePseudobulkSelection(selected, term))
+          )
+        ] : selectedTerms.filter(
+          (selected) => !terms.some((term) => isSamePseudobulkSelection(selected, term))
+        );
+        await this.app.dispatch({ type: "app_refresh", state: { selectedTerms: nextSelectedTerms } });
+        update();
+      }
+    });
+    const wrapper = holder.append("div").style("display", "block").style("padding", "10px 15px 0px");
+    const termRows = wrapper.selectAll(".pseudobulk-term").data(terms, (term) => term.id).join((enter) => {
+      const row = enter.append("div").attr("class", "pseudobulk-term");
+      row.append("div").attr("class", "termlabel sja_filter_tag_btn sja_tree_click_term ts_pill").style("padding", "5px 8px").style("margin", "1px 0px").style("border-radius", "6px").text((term) => term.name);
+      row.append("div").attr("class", "termcheck").style("color", "#008000").html("&check;");
+      return row;
+    });
+    termRows.select(".ts_pill").on("click", async (_, term) => {
+      await setSelected(term, !isSelected(term));
+      update();
+    });
+    const update = () => {
+      termRows.select(".ts_pill").style("background-color", (term) => isSelected(term) ? "#FFC20A80" : "#cfe2f3");
+      termRows.select(".termcheck").style("display", (term) => isSelected(term) ? "inline-block" : "none");
+      const selectedCount = terms.filter(isSelected).length;
+      selectAll.property("checked", terms.length > 0 && selectedCount === terms.length).property("indeterminate", selectedCount > 0 && selectedCount < terms.length);
+    };
+    update();
+  }
+};
+function createPseudobulkTerm(selectedTerm, gene) {
+  const category = selectedTerm.category || selectedTerm.id;
+  const name = `${selectedTerm.assay} ${category} ${gene}`;
+  return { ...selectedTerm, id: name, category, gene, name };
+}
+
+export {
+  isSamePseudobulkSelection,
+  SearchHandler,
+  createPseudobulkTerm
+};
+//# sourceMappingURL=chunk-UO5AU7IW.js.map

package/dist/chunk-UO5AU7IW.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../termdb/handlers/pseudobulk.ts"],
+  "sourcesContent": ["import type { AppApi } from '#rx'\nimport { TermTypeGroups, termType2label } from '#shared/terms.js'\nimport { Tabs, type TabsInputEntry, make_radios, type OptionEntry, Menu, addGeneSearchbox, make_one_checkbox } from '#dom'\nimport type { ClientGenome } from 'types/clientGenome'\nimport type { PseudobulkTerm } from '#types'\n\n/** Human readable labels */\n\ntype PseudobulkSelection = Omit<PseudobulkTerm, 'category' | 'gene'> & {\n\tid: string\n\tcategory?: string\n}\n\n/** A category id is only unique within its assay and member grouping. */\nexport function isSamePseudobulkSelection(a: PseudobulkSelection, b: PseudobulkSelection) {\n\treturn a.type === b.type && a.assay === b.assay && a.memberId === b.memberId && a.id === b.id\n}\n\nexport class SearchHandler {\n\tcallback!: (f?: any) => void\n\tapp!: AppApi\n\tgenome!: ClientGenome\n\tmap?: Map<string, Map<string, any[]>>\n\tselectedTerm?: PseudobulkSelection\n\tmultiSelect!: boolean\n\n\tasync init(opts) {\n\t\tconst pseudobulkTerms = this.validateOpts(opts)\n\t\tthis.callback = opts.callback\n\t\tthis.app = opts.app\n\t\tthis.genome = opts.genomeObj\n\t\tconst holder = opts.holder.append('div').style('padding', '10px 0px')\n\t\tthis.multiSelect = opts?.usecase?.target == \"aggregateMatrix\"\n\t\tthis.selectedTerm = undefined\n\n\t\tthis.map = this.buildRenderingDataMap(pseudobulkTerms)\n\t\tthis.renderPseudobulkSearch(holder)\n\t}\n\n\tvalidateOpts(opts): any[] {\n\t\tif (!opts) throw new Error('opts is required')\n\t\tif (!opts.app) throw new Error('opts.app is required')\n\t\tif (!opts.holder) throw new Error('opts.holder is required')\n\t\tif (opts.genomeObj == null || typeof opts.genomeObj !== 'object') throw new Error('genomeObj is required')\n\t\tif (!opts.callback) throw new Error('opts.callback is required')\n\t\tconst pseudobulkTerms = opts.app.vocabApi.termdbConfig?.termType2terms?.[TermTypeGroups.PSEUDOBULK]\n\t\tif (!pseudobulkTerms) {\n\t\t\tthrow new Error(\n\t\t\t\t`termType2terms[${TermTypeGroups.PSEUDOBULK}]:[] is required in termdbConfig for pseudobulk handler`\n\t\t\t)\n\t\t}\n\t\treturn pseudobulkTerms\n\t}\n\n\t/** Builds a map from assay to memberId to terms */\n\tbuildRenderingDataMap(pseudobulkTerms): Map<string, Map<string, any[]>> {\n\t\tconst map = new Map()\n\t\tfor (const term of pseudobulkTerms) {\n\t\t\tconst { assay, memberId } = term\n\t\t\tif (!map.has(assay)) map.set(assay, new Map())\n\t\t\tconst assayMap = map.get(assay)\n\t\t\tif (!assayMap.has(memberId)) assayMap.set(memberId, [])\n\t\t\tassayMap.get(memberId).push(term)\n\t\t}\n\t\treturn map\n\t}\n\n\t/** If more than one assay, render tabs for each assay. Member IDs within\n\t * an assay are rendered as tabs when there is more than one. */\n\trenderPseudobulkSearch(holder) {\n\t\tif (!this.map || this.map.size < 1) throw new Error('map is not initialized')\n\t\tif (this.map.size === 1) {\n\t\t\t// only one assay\n\t\t\tconst label = termType2label(this.map.keys().next().value!)\n\t\t\tholder.append('div').style('padding-bottom', '10px').text('Single-cell pseudobulk ' + label)\n\t\t\tthis.renderMemberIdsByAssay(holder.append('div'), this.map)\n\t\t\treturn\n\t\t}\n\t\tconst tabs = this.buildTabsOpts(this.map)\n\t\tnew Tabs({ holder, tabs, tabsPosition: 'vertical' }).main()\n\t}\n\n\tbuildTabsOpts(map) {\n\t\tconst tabs: TabsInputEntry[] = []\n\t\tfor (const [key, valuesMap] of map.entries()) {\n\t\t\tconst label = termType2label(key)\n\t\t\ttabs.push({\n\t\t\t\tlabel,\n\t\t\t\tactive: false,\n\t\t\t\tcallback: (_, tab) => {\n\t\t\t\t\tthis.renderMemberIdsByAssay(tab.contentHolder, new Map([[key, valuesMap]]))\n\t\t\t\t}\n\t\t\t})\n\t\t}\n\t\treturn tabs\n\t}\n\n\trenderMemberIdsByAssay(holder, map) {\n\t\tconst memberIdMap = map.values().next().value\n\t\tholder.selectAll('*').remove()\n\t\tthis.renderTermdByMemberId(holder, memberIdMap)\n\t}\n\n\trenderTermdByMemberId(holder, memberIdMap) {\n\t\tconst layout = holder.append('div').style('display', 'flex').style('align-items', 'flex-start').style('gap', '30px')\n\t\tconst pseudoTermsWrapper = layout.append('div').attr('data-testid', 'sjpp-pseudobulk-terms-wrapper')\n\t\tconst geneSearchWrapper = layout.append('div').attr('data-testid', 'sjpp-pseudobulk-gene-search-wrapper')\n\t\tthis.renderPseudobulkTerms(pseudoTermsWrapper, memberIdMap, geneSearchWrapper)\n\t}\n\n\trenderPseudobulkTerms(holder, memberIdMap, geneSearchHolder) {\n\t\tif (memberIdMap.size === 1) {\n\t\t\tconst [memberId, terms] = memberIdMap.entries().next().value\n\t\t\tif (this.multiSelect) {\n\t\t\t\tthis.renderCategoriesAsTerms(holder, terms)\n\t\t\t}\n\t\t\telse this.renderCategoryRadios(holder, memberId, terms, geneSearchHolder)\n\t\t\treturn\n\t\t}\n\n\t\tconst memberEntries = Array.from(memberIdMap.entries()) as [string, any[]][]\n\t\tconst tabs: TabsInputEntry[] = memberEntries.map(([memberId, terms]) => ({\n\t\t\tlabel: memberId,\n\t\t\tactive: false,\n\t\t\ttestid: `sjpp-pseudobulk-member-${memberId}`,\n\t\t\tcallback: (_, tab) => {\n\t\t\t\tgeneSearchHolder.selectAll('*').remove()\n\t\t\t\ttab.contentHolder.selectAll('*').remove()\n\t\t\t\tif (this.multiSelect) this.renderCategoriesAsTerms(tab.contentHolder, terms)\n\t\t\t\telse this.renderCategoryRadios(tab.contentHolder, memberId, terms, geneSearchHolder)\n\t\t\t}\n\t\t}))\n\t\tnew Tabs({ holder, tabs, tabsPosition: 'vertical' }).main()\n\t}\n\n\trenderCategoryRadios(holder, memberId, terms, geneSearchHolder) {\n\t\tif (!terms || terms.length < 1) throw new Error('No terms found for memberId')\n\n\t\tconst options: OptionEntry[] = terms.map(term => ({\n\t\t\tlabel: term.name,\n\t\t\tvalue: term.id,\n\t\t\tchecked: false,\n\t\t\ttestid: `sjpp-pseudobulk-category-${term.id}`\n\t\t}))\n\t\tmake_radios({\n\t\t\tholder,\n\t\t\tinputName: `sjpp-pseudobulk-category-radios-${memberId}`,\n\t\t\toptions,\n\t\t\tstyles: { display: 'block', padding: '3px 5px' },\n\t\t\tcallback: value => {\n\t\t\t\tconst term = terms.find(term => term.id == value)\n\t\t\t\tif (!term) throw new Error(`No pseudobulk term found for category ${value}`)\n\t\t\t\tthis.selectedTerm = term\n\t\t\t\tthis.renderGeneSelection(geneSearchHolder)\n\t\t\t}\n\t\t})\n\t}\n\n\trenderGeneSelection(holder) {\n\t\tholder.selectAll('*').remove()\n\t\tconst geneSearch = addGeneSearchbox({\n\t\t\ttip: new Menu({ padding: '0px' }),\n\t\t\tgenome: this.genome,\n\t\t\trow: holder,\n\t\t\tsearchOnly: 'gene',\n\t\t\tcallback: () => {\n\t\t\t\tif (!geneSearch.geneSymbol) throw new Error('No gene selected')\n\t\t\t\tif (!this.selectedTerm) throw new Error('No pseudobulk cell type selected')\n\t\t\t\tthis.callback(createPseudobulkTerm(this.selectedTerm, geneSearch.geneSymbol))\n\t\t\t}\n\t\t})\n\t}\n\n\t/** Mimics the style and functionality of pills created in tree.js.\n\t * Returns the term object(s) from termdbConfig.termType2terms.[TermTypeGroups.PSEUDOBULK]\n\t * without the gene. */\n\trenderCategoriesAsTerms(holder: any, terms: PseudobulkTerm[]) {\n\t\tholder.style('padding', '0px 10px')\n\n\t\tconst isSelected = term =>\n\t\t\tthis.app.getState().selectedTerms.some(selected => isSamePseudobulkSelection(selected, term))\n\n\t\tconst setSelected = async (term, selected) => {\n\t\t\tconst selectedTerms = this.app.getState().selectedTerms\n\t\t\tif (selectedTerms.some(selectedTerm => isSamePseudobulkSelection(selectedTerm, term)) === selected) return\n\t\t\tconst nextSelectedTerms = selected\n\t\t\t\t? [...selectedTerms, term]\n\t\t\t\t: selectedTerms.filter(selectedTerm => !isSamePseudobulkSelection(selectedTerm, term))\n\t\t\tawait this.app.dispatch({ type: 'app_refresh', state: { selectedTerms: nextSelectedTerms } })\n\t\t}\n\n\t\tconst selectAll = make_one_checkbox({\n\t\t\tholder,\n\t\t\tlabeltext: 'Select all',\n\t\t\tdivstyle: { opacity: '0.7' },\n\t\t\tcallback: async () => {\n\t\t\t\tconst checked = selectAll.property('checked')\n\t\t\t\tconst selectedTerms = this.app.getState().selectedTerms\n\t\t\t\tconst nextSelectedTerms = checked\n\t\t\t\t\t? [\n\t\t\t\t\t\t\t...selectedTerms,\n\t\t\t\t\t\t\t...terms.filter(\n\t\t\t\t\t\t\t\tterm => !selectedTerms.some(selected => isSamePseudobulkSelection(selected, term))\n\t\t\t\t\t\t\t)\n\t\t\t\t\t\t]\n\t\t\t\t\t: selectedTerms.filter(\n\t\t\t\t\t\t\tselected => !terms.some(term => isSamePseudobulkSelection(selected, term))\n\t\t\t\t\t\t)\n\t\t\t\tawait this.app.dispatch({ type: 'app_refresh', state: { selectedTerms: nextSelectedTerms } })\n\t\t\t\tupdate()\n\t\t\t}\n\t\t})\n\n\t\tconst wrapper = holder.append('div').style('display', 'block').style('padding', '10px 15px 0px')\n\n\t\tconst termRows = wrapper\n\t\t\t.selectAll('.pseudobulk-term')\n\t\t\t.data(terms, term => term.id)\n\t\t\t.join(enter => {\n\t\t\t\tconst row = enter .append('div').attr('class', 'pseudobulk-term')\n\n\t\t\t\trow\n\t\t\t\t\t.append('div')\n\t\t\t\t\t.attr('class', 'termlabel sja_filter_tag_btn sja_tree_click_term ts_pill')\n\t\t\t\t\t.style('padding', '5px 8px')\n\t\t\t\t\t.style('margin', '1px 0px')\n\t\t\t\t\t.style('border-radius', '6px')\n\t\t\t\t\t.text(term => term.name)\n\n\t\t\t\trow.append('div').attr('class', 'termcheck').style('color', '#008000').html('&check;')\n\n\t\t\t\treturn row\n\t\t\t})\n\n\t\ttermRows.select('.ts_pill').on('click', async (_, term) => {\n\t\t\tawait setSelected(term, !isSelected(term))\n\t\t\tupdate()\n\t\t})\n\n\t\tconst update = () => {\n\t\t\ttermRows\n\t\t\t\t.select('.ts_pill')\n\t\t\t\t.style('background-color', term => (isSelected(term) ? '#FFC20A80' : '#cfe2f3'))\n\n\t\t\ttermRows.select('.termcheck').style('display', term => (isSelected(term) ? 'inline-block' : 'none'))\n\t\t\tconst selectedCount = terms.filter(isSelected).length\n\t\t\tselectAll\n\t\t\t\t.property('checked', terms.length > 0 && selectedCount === terms.length)\n\t\t\t\t.property('indeterminate', selectedCount > 0 && selectedCount < terms.length)\n\t\t}\n\n\t\tupdate()\n\t}\n}\n\n/** Create a pseudobulk term for the selected cell type and gene. */\nexport function createPseudobulkTerm(selectedTerm: PseudobulkSelection, gene: string): PseudobulkTerm {\n\tconst category = selectedTerm.category || selectedTerm.id\n\tconst name = `${selectedTerm.assay} ${category} ${gene}`\n\treturn { ...selectedTerm, id: name, category, gene, name }\n}\n"],
+  "mappings": 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+  "names": ["term"]
+}

package/dist/chunk-UTOWZWZ5.js

@@ -0,0 +1,243 @@
+import {
+  keyupEnter
+} from "./chunk-NQDF3U2C.js";
+import {
+  get_bin_label,
+  get_bin_range_equation
+} from "./chunk-GRVO7RW4.js";
+import {
+  toStoredUnit,
+  toUserUnit
+} from "./chunk-W5J3LTYS.js";
+
+// termsetting/handlers/NumCustomBinEditor.ts
+var NumCustomBinEditor = class {
+  constructor(editHandler) {
+    this.dom = {};
+    this.editHandler = editHandler;
+    this.opts = editHandler.opts;
+    this.tw = editHandler.tw;
+    this.termsetting = editHandler.termsetting;
+  }
+  /* bin boundaries are stored in the term's own unit but entered and shown in its user-facing one.
+  both are identity functions unless the term declares valueConversion{} */
+  toDisplay(v) {
+    return toUserUnit(v, this.tw.term);
+  }
+  toStored(v) {
+    return toStoredUnit(v, this.tw.term);
+  }
+  async render(div) {
+    this.tw = this.editHandler.tw;
+    const isRemounting = !!this.dom.inputsDiv && this.editHandler.dom.binsDiv?.node().contains(this.dom.inputsDiv.node());
+    if (!isRemounting) this.q = this.getDefaultQ();
+    await this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
+    if (isRemounting) return;
+    if (this.dom.inputsDiv) {
+      this.dom.inputsDiv.remove();
+      delete this.dom.inputsDiv;
+    }
+    this.dom.inputsDiv = div.append("div").style("display", "flex").style("width", "100%");
+    this.renderCustomBinInputs();
+  }
+  getBoundaryOpts() {
+    return {
+      values: this.q.lst.slice(1).map((bin) => ({ x: this.toDisplay(bin.startunbounded ? bin.stop : bin.start), isDraggable: true })),
+      // the dragged value arrives in display units, matching what the textarea holds
+      callback: (d, value) => {
+        const boundaryValues = this.q.lst.slice(1).map((d2) => "start" in d2 ? this.toDisplay(d2.start) : "");
+        boundaryValues[d.index] = value;
+        this.dom.customBinBoundaryInput.property("value", boundaryValues.join("\n"));
+        this.handleInputChange("drag");
+        return 0;
+      }
+    };
+  }
+  getDefaultQ() {
+    if (this.tw.q.mode == "discrete" && this.tw.q.type == "custom-bin") {
+      const copy = JSON.parse(JSON.stringify(this.tw.q));
+      copy.lst.forEach((bin) => {
+        if (!bin.label) bin.label = get_bin_label(bin, this.tw.q, this.tw.term.valueConversion);
+        bin.range = get_bin_range_equation(bin, this.tw.q, this.tw.term.valueConversion);
+      });
+      return copy;
+    }
+    const { min, max } = this.editHandler.handler.density_data;
+    const defaultCustomBoundary = (
+      /* when no sample is annotated by this term,
+      minvalue and maxvalue are both null
+      setting defaultCustomBoundary to arbitrary "0" will allow existing UI to work
+      but remains to be evaluated if is really okay to use 0
+      */
+      !Number.isFinite(min) || !Number.isFinite(max) ? 0 : (
+        // minvalue and maxvalue is valid number
+        max != min ? min + (max - min) / 2 : max
+      )
+    );
+    const firstBin = {
+      startunbounded: true,
+      startinclusive: false,
+      stopinclusive: false,
+      stop: +defaultCustomBoundary.toFixed(this.tw.term.type == "integer" ? 0 : 2)
+    };
+    const lastBin = {
+      stopunbounded: true,
+      startinclusive: true,
+      stopinclusive: false,
+      start: +defaultCustomBoundary.toFixed(this.tw.term.type == "integer" ? 0 : 2)
+    };
+    return {
+      mode: "discrete",
+      type: "custom-bin",
+      lst: [
+        // Type '{ label: any; range: any; startunbounded: boolean; startinclusive: boolean; stopinclusive: boolean; stop: number; }' is not assignable to type 'StartUnboundedBin | FullyBoundedBin'.
+        // Property 'start' is missing in type '{ label: any; range: any; startunbounded: boolean; startinclusive: boolean; stopinclusive: boolean; stop: number; }' but required in type 'FullyBoundedBin'.
+        {
+          ...firstBin,
+          label: get_bin_label(firstBin, this.tw.q, this.tw.term.valueConversion),
+          range: get_bin_range_equation(firstBin, this.tw.q, this.tw.term.valueConversion)
+        },
+        {
+          ...lastBin,
+          label: get_bin_label(lastBin, this.tw.q, this.tw.term.valueConversion),
+          range: get_bin_range_equation(lastBin, this.tw.q, this.tw.term.valueConversion)
+        }
+        //satisfies StopUnboundedBin
+      ]
+    };
+  }
+  /******************* Functions for Numerical Custom size bins *******************/
+  renderCustomBinInputs() {
+    const q = this.q;
+    const boundaryDiv = this.dom.inputsDiv.append("div").style("margin-right", "20px");
+    this.dom.rangeAndLabelDiv = this.dom.inputsDiv.append("div");
+    boundaryDiv.append("div").style("margin-bottom", "5px").style("color", "rgb(136, 136, 136)").text("Bin boundaries");
+    this.dom.customBinBoundaryInput = boundaryDiv.append("textarea").style("width", "100px").style("height", "70px").text(
+      q.lst.slice(1).map((d) => "start" in d ? this.toDisplay(d.start) : "").join("\n")
+    ).on("change", () => this.handleInputChange()).on("keyup", async (event) => {
+      if (!keyupEnter(event) && event.key != 8 && event.key != "Enter") return;
+      if (!this.dom.inputsDiv.selectAll("input").node().value) return;
+      this.handleInputChange();
+    });
+    boundaryDiv.append("div").style("font-size", ".6em").style("margin-left", "1px").style("color", "#858585").html("Enter numeric values </br>seperated by ENTER");
+    this.renderBoundaryInputDivs();
+  }
+  renderBoundaryInputDivs() {
+    const data = this.q.lst;
+    const holder = this.dom.rangeAndLabelDiv;
+    holder.selectAll("*").remove();
+    const grid = holder.append("div").style("display", "grid").style("grid-template-columns", "auto auto").style("column-gap", "20px").style("align-items", "center");
+    grid.append("div").style("margin-bottom", "3px").style("color", "rgb(136, 136, 136)").text("Range");
+    grid.append("div").style("margin-bottom", "3px").style("color", "rgb(136, 136, 136)").text("Bin label");
+    for (const d of data) {
+      grid.append("div").attr("name", "range").html(d.range);
+      grid.append("div").append("input").attr("type", "text").style("margin", "2px 0px").property("value", d.label).on("change", function() {
+        d.label = this.value;
+      });
+    }
+    this.dom.customBinRanges = this.dom.inputsDiv.selectAll('div[name="range"]').data(data);
+    this.dom.customBinLabelInput = this.dom.inputsDiv.selectAll("input").data(data);
+  }
+  handleInputChange(eventType = "") {
+    const self = this.tw;
+    const inputs = this.dom.inputsDiv.selectAll("input");
+    inputs.property("value", "");
+    const data = this.processCustomBinInputs();
+    if (data == void 0) {
+      return;
+    }
+    if (self.q.hiddenValues) this.tw.q.hiddenValues = self.q.hiddenValues;
+    if (this.binsChanged(data, this.q.lst)) {
+      this.q.lst = data;
+    }
+    this.renderBoundaryInputDivs();
+    if (eventType != "drag") this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
+  }
+  binsChanged(data, qlst) {
+    if (data.length != qlst.length) return true;
+    if (Object.keys(data[0]).length !== Object.keys(qlst[0]).length) return true;
+    for (const [i, bin] of qlst.entries()) {
+      for (const k of Object.keys(bin)) {
+        if (bin[k] && bin[k] !== data[i][k]) {
+          return true;
+        }
+      }
+    }
+    return false;
+  }
+  processCustomBinInputs() {
+    const self = this.termsetting;
+    const startinclusive = this.editHandler.boundaryInclusion == "startinclusive";
+    const stopinclusive = this.editHandler.boundaryInclusion == "stopinclusive";
+    const inputs = this.dom.inputsDiv.node().querySelectorAll("input");
+    const inputData = this.dom.customBinBoundaryInput.property("value").split("\n").filter((d) => d != "" && !isNaN(d));
+    const trackBins = new Set(inputData);
+    if (!trackBins.size) return this.tw.q.lst;
+    const sortedBins = Array.from(trackBins).map((v) => this.toStored(Number(v))).sort((a, b) => a - b);
+    const data = [
+      // first bin: StartUnbounded type
+      {
+        startunbounded: true,
+        stop: sortedBins[0],
+        startinclusive: false,
+        stopinclusive,
+        label: inputs[0].value
+      }
+    ];
+    if (!data[0].label) data[0].label = get_bin_label(data[0], self.q, self.term.valueConversion);
+    if (!data[0].range) data[0].range = get_bin_range_equation(data[0], self.q, self.term.valueConversion);
+    for (const [i, d] of sortedBins.entries()) {
+      let bin;
+      const label = inputs[i + 1]?.value || "";
+      if (i !== trackBins.size - 1) {
+        bin = {
+          start: +d,
+          startinclusive,
+          stopinclusive,
+          stop: sortedBins[i + 1],
+          label
+          //range: ''
+        };
+      } else {
+        bin = {
+          start: +d,
+          startinclusive,
+          stopinclusive: false,
+          stopunbounded: true,
+          label
+          //range: ''
+        };
+      }
+      if (bin.label === "" || bin.label === void 0) bin.label = get_bin_label(bin, self.q, self.term.valueConversion);
+      if (bin.range === "" || bin.range === void 0)
+        bin.range = get_bin_range_equation(bin, self.q, self.term.valueConversion);
+      data.push(bin);
+    }
+    return data;
+  }
+  getEditedQ(destroyDom = true) {
+    const lst = this.processCustomBinInputs();
+    if (destroyDom) {
+      for (const name of Object.keys(this.dom)) {
+        this.dom[name].remove();
+        delete this.dom[name];
+      }
+    }
+    return {
+      mode: "discrete",
+      type: "custom-bin",
+      lst
+    };
+  }
+  undoEdits() {
+    this.q = this.getDefaultQ();
+    this.dom.inputsDiv.selectAll("*").remove();
+    this.renderCustomBinInputs();
+    this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
+  }
+};
+
+export {
+  NumCustomBinEditor
+};
+//# sourceMappingURL=chunk-UTOWZWZ5.js.map