@sjcrh/proteinpaint-client 2.205.0 → 2.206.1

package/dist/DifferentialAnalysis-XGXHWGPI.js

@@ -1,237 +0,0 @@
-import {
-  getDefaultGseaSettings
-} from "./chunk-KTKZSYIH.js";
-import {
-  DATermTypes,
-  PlotBase,
-  Tabs,
-  enabledTermTypes,
-  getDefaultVolcanoSettings,
-  validateVolcanoSettings
-} from "./chunk-J7JDCNLU.js";
-import "./chunk-HJ6L54YS.js";
-import "./chunk-KV4W2ACA.js";
-import {
-  importPlot
-} from "./chunk-N635HDJ4.js";
-import "./chunk-T46FA72N.js";
-import {
-  Menu
-} from "./chunk-ELJX3QIQ.js";
-import "./chunk-EEB5VE2A.js";
-import "./chunk-6RRZRISL.js";
-import "./chunk-2KM4PRQM.js";
-import "./chunk-JYOIO5UY.js";
-import "./chunk-YN5NY3D3.js";
-import {
-  termType2label
-} from "./chunk-RN4BOWRH.js";
-import {
-  PROTEOME_DAP
-} from "./chunk-IK2BO37K.js";
-import {
-  copyMerge,
-  getCompInit
-} from "./chunk-WINIL2KN.js";
-import "./chunk-PF4DSFDR.js";
-import "./chunk-D6G64XPJ.js";
-import "./chunk-W5J3LTYS.js";
-import "./chunk-YLJOZP4P.js";
-import "./chunk-HDTFYTEL.js";
-import "./chunk-FXQXCOII.js";
-import "./chunk-TLT4YIG3.js";
-import "./chunk-5R63Q5KH.js";
-import "./chunk-I6Y4O3RR.js";
-import "./chunk-Q5RDQNIT.js";
-import "./chunk-DQC5FFGV.js";
-import "./chunk-HS5PO5ZQ.js";
-
-// plots/diffAnalysis/view/DiffAnalysisView.ts
-var DiffAnalysisView = class {
-  constructor(app, config, dom) {
-    this.app = app;
-    this.config = config;
-    this.dom = dom;
-    setRenderers(this);
-    this.tabsData = this.getTabsOptions(this);
-    this.tabs = new Tabs({ holder: this.dom.tabsDiv, tabs: this.tabsData });
-    this.tabs.main();
-  }
-  update(plotConfig) {
-    const activeTabIndex = this.tabsData.findIndex((tab) => tab.id == plotConfig.childType);
-    this.tabs.update(activeTabIndex);
-  }
-};
-function setRenderers(self) {
-  self.getTabsOptions = (self2) => {
-    const tabs = [
-      {
-        active: self2.config.childType === "volcano",
-        id: "volcano",
-        label: "Volcano",
-        isVisible: () => true,
-        // isVisible: () => self.config.termType === TermTypes.GENE_EXPRESSION,
-        getPlotConfig: () => {
-          return {
-            childType: "volcano"
-          };
-        },
-        callback: self2.tabCallback
-      },
-      {
-        active: self2.config.childType === "gsea",
-        id: "gsea",
-        label: "Gene Set Enrichment Analysis",
-        isVisible: () => self2.config.termType !== PROTEOME_DAP,
-        // isVisible: () => self.config.termType === TermTypes.GENE_EXPRESSION,
-        getPlotConfig: () => {
-          return {
-            childType: "gsea"
-          };
-        },
-        callback: self2.tabCallback
-      }
-    ];
-    return tabs;
-  };
-  self.tabCallback = async (event, tab) => {
-    if (!event || !tab || !tab.id) return;
-    const plotConfig = tab.getPlotConfig();
-    await self.app.dispatch({
-      type: "plot_edit",
-      id: self.config.id,
-      config: plotConfig
-    });
-  };
-}
-
-// plots/diffAnalysis/DifferentialAnalysis.ts
-var { SINGLECELL_CELLTYPE } = DATermTypes;
-var DifferentialAnalysis = class _DifferentialAnalysis extends PlotBase {
-  static {
-    this.type = "differentialAnalysis";
-  }
-  constructor(opts, api) {
-    super(opts, api);
-    this.type = _DifferentialAnalysis.type;
-    this.components = {
-      plots: {}
-    };
-    this.termType = opts.termType;
-    const holder = opts.holder.classed("sjpp-diff-analysis-main", true);
-    const controls = opts.controls ? holder : holder.append("div");
-    const div = holder.append("div").style("padding", "5px").style("display", "inline-block").style("vertical-align", "top");
-    const tabsDiv = div.append("div").attr("id", "sjpp-diff-analysis-tabs").style("display", "inline-block");
-    const plots = div.append("div").attr("id", "sjpp-diff-analysis-tabs-content");
-    this.dom = {
-      controls: controls.style("display", "inline-block"),
-      div,
-      tabsDiv,
-      plots,
-      tip: new Menu({ padding: "" })
-    };
-    this.plotsControlsDiv = {};
-    this.plotsDiv = {};
-    if (opts.parentId) this.parentId = opts.parentId;
-    if (opts.header) {
-      this.dom.header = {
-        title: opts.header.append("span").style("margin-right", "5px").style("color", "darkslategray"),
-        plot: opts.header.append("span").style("font-size", "0.7em").style("opacity", 0.6)
-      };
-    }
-  }
-  getState(appState) {
-    const config = appState.plots.find((p) => p.id === this.id);
-    if (!config) {
-      throw new Error(
-        `No plot with id='${this.id}' found. Did you set this.id before this.api = getComponentApi(this)?`
-      );
-    }
-    return {
-      config
-    };
-  }
-  reactsTo(action) {
-    if (action.type.startsWith("plot_")) {
-      return action.id === this.id || action.id == this.parentId;
-    }
-    if (action.type.startsWith("filter")) return true;
-    if (action.type.startsWith("cohort")) return true;
-    if (action.type == "app_refresh") return true;
-  }
-  async init(appState) {
-    const state = this.getState(appState);
-    const config = structuredClone(state.config);
-    this.plotTabs = new DiffAnalysisView(this.app, config, this.dom);
-  }
-  async setComponent(config) {
-    this.plotsControlsDiv[config.childType] = this.dom.controls.append("div");
-    this.plotsDiv[config.childType] = this.dom.plots.append("div");
-    const opts = {
-      app: this.app,
-      holder: this.plotsDiv[config.childType],
-      id: this.id,
-      parent: this.api,
-      controls: this.plotsControlsDiv[config.childType],
-      termType: config.termType
-    };
-    const _ = await importPlot(config.childType, `unsupported childType='${config.childType}'`);
-    this.components.plots[config.childType] = await _.componentInit(opts);
-  }
-  async main() {
-    const config = structuredClone(this.state.config);
-    if (config.chartType != this.type) return;
-    if (!this.components.plots[config.childType]) await this.setComponent(config);
-    for (const childType in this.components.plots) {
-      const chart = this.components.plots[childType];
-      if (chart.type != config.childType) {
-        this.plotsDiv[chart.type].style("display", "none");
-        this.plotsControlsDiv[chart.type].style("display", "none");
-      }
-    }
-    this.plotsDiv[config.childType].style("display", "");
-    this.plotsControlsDiv[config.childType].style("display", "");
-    if (this.dom.header) {
-      if (config.tw) this.dom.header.title.text(config.tw.term.name);
-      if (config.headerText) this.dom.header.title.text(config.headerText);
-      const typeStr = termType2label(config.termType).toUpperCase();
-      this.dom.header.plot.text(` DIFFERENTIAL ${typeStr} ANALYSIS`);
-    }
-    if (this.plotTabs) this.plotTabs.update(config);
-  }
-};
-var DiffAnalysisInit = getCompInit(DifferentialAnalysis);
-var componentInit = DiffAnalysisInit;
-function getPlotConfig(opts, app) {
-  if (!opts.termType) throw new Error(".termType is required");
-  if (!enabledTermTypes.has(opts.termType))
-    throw new Error(`termType = '${opts.termType}' not supported by Differential Analysis`);
-  const config = {
-    chartType: "differentialAnalysis",
-    childType: "volcano",
-    termType: opts.termType,
-    settings: {},
-    highlightedData: opts.highlightedData || [],
-    hidePlotFilter: true
-    //TODO: Support filtering and reactivity in child plots
-  };
-  if (opts?.tw?.term?.name && opts.headerText)
-    throw new Error("Cannot provide both tw.term.name and headerText. Please choose one to use as the plot title.");
-  if (opts.termType == SINGLECELL_CELLTYPE) {
-    Object.assign(config, {
-      categoryName: opts.categoryName || "",
-      termId: opts.termId || "",
-      sample: opts.sample || { sID: "", eID: "" }
-    });
-  }
-  config.settings.volcano = getDefaultVolcanoSettings(opts.overrides, { ...opts, app: opts.app || app });
-  config.settings.gsea = getDefaultGseaSettings(opts.overrides, opts);
-  validateVolcanoSettings(config, opts);
-  return copyMerge(config, opts);
-}
-export {
-  DiffAnalysisInit,
-  componentInit,
-  getPlotConfig
-};
-//# sourceMappingURL=DifferentialAnalysis-XGXHWGPI.js.map