@sjcrh/proteinpaint-client 2.197.0 → 2.198.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/2dmaf-R3PFZNRN.js +1373 -0
- package/dist/AIProjectAdmin-DM3KG6SR.js +958 -0
- package/dist/AppHeader-6DZQ6YZX.js +835 -0
- package/dist/BoxPlot-76NINVX4.js +1217 -0
- package/dist/CorrelationVolcano-U5UMJNH5.js +619 -0
- package/dist/DE-AXNYWIQK.js +95 -0
- package/dist/DEinput-JH6YY6LS.js +301 -0
- package/dist/DifferentialAnalysis-25P4CGIY.js +242 -0
- package/dist/Disco-NVMLF3BK.js +3392 -0
- package/dist/Disco-NVMLF3BK.js.map +7 -0
- package/dist/Disco.UI-C7CZINUQ.js +249 -0
- package/dist/DmrPlot-WROR4ENM.js +642 -0
- package/dist/GB-JUABODPH.js +1394 -0
- package/dist/GB-JUABODPH.js.map +7 -0
- package/dist/GSEA-Y5R2THIJ.js +846 -0
- package/dist/GeneExpInput-JDU6EI7K.js +367 -0
- package/dist/Geomap-J763OK2F.js +89 -0
- package/dist/Geomap-J763OK2F.js.map +7 -0
- package/dist/HicApp-UNIJLH4B.js +2250 -0
- package/dist/IDCViewer-KVPCIUDW.js +10803 -0
- package/dist/IDCViewer-KVPCIUDW.js.map +7 -0
- package/dist/NumBinaryEditor-WMN2GGO4.js +271 -0
- package/dist/NumBinaryEditor.unit.spec-TAMXV6SE.js +286 -0
- package/dist/NumContEditor-XYIOJY4E.js +109 -0
- package/dist/NumContEditor.unit.spec-WDZ75BHO.js +169 -0
- package/dist/NumCustomBinEditor-5SY3C4TY.js +38 -0
- package/dist/NumCustomBinEditor.unit.spec-XHTAIXR3.js +284 -0
- package/dist/NumDiscreteEditor-NRDRX4FD.js +179 -0
- package/dist/NumDiscreteEditor.unit.spec-2CJW7OAT.js +202 -0
- package/dist/NumRegularBinEditor-DUDVTNDC.js +38 -0
- package/dist/NumRegularBinEditor.unit.spec-H3GNQHMN.js +227 -0
- package/dist/NumSplineEditor-7Q4AC7KH.js +198 -0
- package/dist/NumSplineEditor.unit.spec-YRZK5PH5.js +199 -0
- package/dist/NumericDensity-NTNWUESG.js +38 -0
- package/dist/NumericDensity.unit.spec-5I5U6T6P.js +221 -0
- package/dist/NumericHandler-MEW2KMPX.js +39 -0
- package/dist/NumericHandler.unit.spec-JFX4BPRG.js +219 -0
- package/dist/ProteomeInput-K2ZHR2U6.js +395 -0
- package/dist/RunChart2-BEBDU7RC.js +758 -0
- package/dist/SC-XCBFJVUJ.js +1120 -0
- package/dist/Volcano-4Y4TP3UX.js +1385 -0
- package/dist/WSIViewer-ZLQU62PD.js +48562 -0
- package/dist/WsiSamplesPlot-JMBSITOM.js +165 -0
- package/dist/adSandbox-664IRCRL.js +38 -0
- package/dist/animatedBubbleChart-TX7NW34K.js +555 -0
- package/dist/app-63WJ3BMP.js +37 -0
- package/dist/app-77FIZHCG.js +49 -0
- package/dist/app.js +19 -19
- package/dist/bam-IETNVAYD.js +860 -0
- package/dist/barchart-YUVXJNH4.js +47 -0
- package/dist/barchart.data-P4EIQXGE.js +22 -0
- package/dist/barchart.events-JPVCLTIG.js +47 -0
- package/dist/barchart.integration.spec-ZH7DEQI2.js +2196 -0
- package/dist/barchart2-XO2FG76J.js +314 -0
- package/dist/bars.renderer-AUIWUJDH.js +12 -0
- package/dist/block-NBTCOT3H.js +6255 -0
- package/dist/block.init-X7Y2EEVR.js +38 -0
- package/dist/block.mds.expressionrank-BIAOZIZ3.js +359 -0
- package/dist/block.mds.geneboxplot-CNICDVLK.js +828 -0
- package/dist/block.mds.junction-PQXCTSUI.js +1545 -0
- package/dist/block.mds.svcnv-32KMVTCT.js +6801 -0
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- package/dist/block.tk.aicheck-HDV7ZIUD.js +283 -0
- package/dist/block.tk.ase-JIDWKMYI.js +365 -0
- package/dist/block.tk.bam-5X3OS5HB.js +1906 -0
- package/dist/block.tk.bedgraphdot-T7JX7YQL.js +384 -0
- package/dist/block.tk.bigwig.ui-OSAYEBAE.js +212 -0
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- package/dist/block.tk.junction-7UAFEZSJ.js +2364 -0
- package/dist/block.tk.junction.textmatrixui-27LHS33U.js +199 -0
- package/dist/block.tk.ld-DF2PI7OO.js +99 -0
- package/dist/block.tk.menu-L2D5KBIV.js +1029 -0
- package/dist/block.tk.pgv-QO56SKBV.js +944 -0
- package/dist/brainImaging-NIPQWFWO.js +423 -0
- package/dist/brainRegions-ZNZ2WHSU.js +221 -0
- package/dist/bubbleHeatmap-ERWNEKZB.js +383 -0
- package/dist/chunk-2GYWFQML.js +299 -0
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- package/dist/condition-2PASYSUC.js +332 -0
- package/dist/controls-5IMJ6K5L.js +41 -0
- package/dist/controls.config-P5PG2DHW.js +39 -0
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- package/dist/cuminc-2HUFEROK.js +1149 -0
- package/dist/cuminc.integration.spec-WFWAPTDA.js +678 -0
- package/dist/customdata.inputui-ZHWNEPFH.js +289 -0
- package/dist/dataDownload-VBSJBKMP.js +330 -0
- package/dist/dataDownload.integration.spec-LUFSETOP.js +193 -0
- package/dist/databrowser.ui-6H2KMSTJ.js +433 -0
- package/dist/dictionary-V37LXFIP.js +118 -0
- package/dist/dnaMethylation-OIZMHMLK.js +38 -0
- package/dist/dnaMethylation.integration.spec-CWPTJ74H.js +203 -0
- package/dist/dofetch-IWPZQB5N.js +51 -0
- package/dist/e2pca-7SLIAGYW.js +350 -0
- package/dist/ep-7L6KF6K4.js +1256 -0
- package/dist/expclust.gdc.spec-JT452Q3G.js +307 -0
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- package/dist/forms2-VPNCLQOY.js +539 -0
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- package/dist/geneExpClustering-FQTCKRJJ.js +249 -0
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- package/dist/geneRanking-SFK4UBKQ.js +553 -0
- package/dist/geneVariant-IYEHB4H7.js +41 -0
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- package/dist/geneset-A6VUFX63.js +208 -0
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- /package/dist/{radarFacility2-O6GQLBBN.js.map → radarFacility2-3SBR2JJ3.js.map} +0 -0
- /package/dist/{regression-CLG6NYVF.js.map → regression-WMRPQJW2.js.map} +0 -0
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- /package/dist/{regression.inputs.term-ZKIP6KDO.js.map → regression.inputs.term-OWE6GWHM.js.map} +0 -0
- /package/dist/{regression.inputs.values.table-2VD4AO5T.js.map → regression.inputs.values.table-4INNZQI2.js.map} +0 -0
- /package/dist/{regression.integration.spec-JEIMN7MS.js.map → regression.integration.spec-XKQ2JOOT.js.map} +0 -0
- /package/dist/{regression.results-FT6VSWGR.js.map → regression.results-VZBYMBYC.js.map} +0 -0
- /package/dist/{regression.spec-V4S52JQM.js.map → regression.spec-DU3UTDCJ.js.map} +0 -0
- /package/dist/{sampleView-JIGZ7GTP.js.map → render-N5FOF247.js.map} +0 -0
- /package/dist/{report-UPQFSI4D.js.map → report-DW3OHB67.js.map} +0 -0
- /package/dist/{sampleScatter.spec-QSRF3STG.js.map → sampleScatter.spec-REFSK2V4.js.map} +0 -0
- /package/dist/{singleCellCellType-FJ53DRXD.js.map → sampleView-ICOT2R6O.js.map} +0 -0
- /package/dist/{samplelst-VJMYHVXI.js.map → samplelst-TJEVASYG.js.map} +0 -0
- /package/dist/{samplematrix-LO4QB37V.js.map → samplematrix-6DAWCXQ3.js.map} +0 -0
- /package/dist/{sc-4VZBGFZP.js.map → sc-53LNOB7N.js.map} +0 -0
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- /package/dist/{selectGenomeWithTklst-IJTCLRIN.js.map → selectGenomeWithTklst-WTX66TV3.js.map} +0 -0
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- /package/dist/{singleCellPlot-Q5UNIW3M.js.map → singleCellGeneExpression-YR2ZT34W.js.map} +0 -0
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- /package/dist/{snp-S4O7SVDD.js.map → singleCellPlot-3ICIOILE.js.map} +0 -0
- /package/dist/{singlecell-TX5AQ4WM.js.map → singlecell-6ZUFA3BQ.js.map} +0 -0
- /package/dist/{singlecell-N7F5KVIB.js.map → singlecell-KX7W4U57.js.map} +0 -0
- /package/dist/{ssGSEA-BH53XGEZ.js.map → snp-VIURB7L3.js.map} +0 -0
- /package/dist/{snp.unit.spec-WSQMZSTE.js.map → snp.unit.spec-ACZNZUNS.js.map} +0 -0
- /package/dist/{snplocus-Y2R5C4ZP.js.map → snplocus-3LW4ZUZR.js.map} +0 -0
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- /package/dist/{summarizeMutationDiagnosis-EUZXCSZP.js.map → ssGSEA-THW4WFMI.js.map} +0 -0
- /package/dist/{ssGSEA.unit.spec-BYIVB7FZ.js.map → ssGSEA.unit.spec-HTRGQI2K.js.map} +0 -0
- /package/dist/{summarizeCnvGeneexp-IZNOX4E7.js.map → summarizeCnvGeneexp-RFYC3H2Z.js.map} +0 -0
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- /package/dist/{summarizeMutationSurvival-CXFT3HWL.js.map → summarizeMutationSurvival-QJHZRQBZ.js.map} +0 -0
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- /package/dist/{termCollection-JOLQJYJ3.js.map → survival-QNEI6YVK.js.map} +0 -0
- /package/dist/{survival-XFVYNI6S.js.map → survival-UI74VXSM.js.map} +0 -0
- /package/dist/{survival.integration.spec-KVXHHAA3.js.map → survival.integration.spec-X5N3JQXS.js.map} +0 -0
- /package/dist/{svgraph-ACEBMDIX.js.map → svgraph-PSX2NER3.js.map} +0 -0
- /package/dist/{svmr-IQEDSZ2C.js.map → svmr-QDQ33EFX.js.map} +0 -0
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- /package/dist/{termCollection-PSXFFR32.js.map → termCollection-3JHR74FG.js.map} +0 -0
- /package/dist/{tk-AAIHEQO6.js.map → termCollection-CDF5LYUG.js.map} +0 -0
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- /package/dist/{tvs.dt-FSA7KPSQ.js.map → tk-OEQFO73V.js.map} +0 -0
- /package/dist/{tp.ui-6STLQEXX.js.map → tp.ui-SHNERDGC.js.map} +0 -0
- /package/dist/{tvs.numeric-KYAU5OV3.js.map → tvs.dt-CZDC4TSR.js.map} +0 -0
- /package/dist/{tvs.dtcnv.categorical-FSPGH7DP.js.map → tvs.dtcnv.categorical-OPBDHZGB.js.map} +0 -0
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- /package/dist/{tvs.dtsv-OTNHXYOJ.js.map → tvs.dtsv-3UMCW65O.js.map} +0 -0
- /package/dist/{violin-HEFFKPL5.js.map → tvs.numeric-TOEPASWN.js.map} +0 -0
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- /package/dist/{tvs.termCollection-ZAPCUMUW.js.map → tvs.termCollection-WT4WZMYR.js.map} +0 -0
- /package/dist/{violin.interactivity-XNYJSK53.js.map → violin-2YGXTBDS.js.map} +0 -0
- /package/dist/{violin.integration.spec-774N4G5A.js.map → violin.integration.spec-YWNHVAGS.js.map} +0 -0
- /package/dist/{violin.renderer-R74VSGRC.js.map → violin.interactivity-J6BE2UQL.js.map} +0 -0
- /package/dist/{vocabulary-OHMC6NWL.js.map → violin.renderer-3GRUWP2U.js.map} +0 -0
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// termsetting/handlers/NumBinaryEditor.ts
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constructor(opts, handler) {
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async showEditMenu(div) {
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getBoundaryInclusion() {
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}
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renderBoundaryInclusionSelect() {
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this.dom.boundaryInclusionDiv.selectAll("*").remove();
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this.dom.boundaryInclusionDiv.append("span").style("padding", "5px").style("color", "rgb(136, 136, 136)").html("Boundary Inclusion");
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const x = '<span style="font-family:Times;font-style:italic">x</span>';
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this.dom.boundaryInclusionSelect = this.dom.boundaryInclusionDiv.append("select").style("margin-left", "10px").on("change", () => {
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this.renderBoundaryInputDivs();
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this.dom.boundaryInclusionSelect.selectAll("option").data([
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{ value: "stopinclusive", html: `start < ${x} ≤ end` },
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{ value: "startinclusive", html: `start ≤ ${x} < end` }
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]).enter().append("option").property("value", (d) => d.value).property("selected", (d) => this.tw.q.lst?.[0]?.[d.value] == true).html((d) => d.html);
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}
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async renderCutoffInput() {
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this.dom.cutoff_div.append("span").style("margin-right", "5px").style("opacity", 0.5).text("Boundary value");
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const q = this.q;
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this.dom.cutoffInput = this.dom.cutoff_div.append("input").style("width", "100px").attr("type", "number").style("margin-right", "10px").attr("value", q.lst[0].stop).on("change", () => this.renderBoundaryInputDivs());
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this.dom.cutoffPercentileCheckbox = make_one_checkbox({
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divstyle: { display: "inline-block" },
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callback: async (checked) => {
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this.dom.cutoffInput.property("disabled", checked == true);
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this.dom.cutoffInputPercentile.style("display", checked ? "" : "none");
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this.handlePercentileChange();
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}
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});
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|
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this.dom.cutoffInputPercentile = this.dom.cutoff_div.append("input").attr("type", "number").attr("value", this.cutoffPercentile).style("display", "none").style("width", "100px").style("margin-right", "10px").on("change", () => this.handlePercentileChange());
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}
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async handlePercentileChange() {
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try {
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const cutoffPercentile = Number(this.dom.cutoffInputPercentile.property("value"));
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this.q.cutoffPercentile = cutoffPercentile;
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const data = await this.termsetting.vocabApi.getPercentile(
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this.tw.term,
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[cutoffPercentile],
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this.termsetting.vocabApi.state?.termfilter
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);
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this.dom.cutoffInput.property("value", data.values[0]);
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} catch (e) {
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}
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}
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renderBoundaryInputDivs() {
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const cutoff = this.dom.cutoffInput.property("value");
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this.q.lst[0].stop = cutoff;
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this.q.lst[1].start = cutoff;
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this.q.lst = this.processBinaryBinInputs();
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const data = this.q.lst;
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holder.selectAll("*").remove();
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const grid = holder.append("div").style("display", "grid").style("grid-template-columns", "auto auto").style("column-gap", "20px").style("align-items", "center");
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grid.append("div").style("margin-bottom", "3px").style("color", "rgb(136, 136, 136)").text("Range");
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grid.append("div").style("margin-bottom", "3px").style("color", "rgb(136, 136, 136)").text("Bin label");
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for (const d of data) {
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grid.append("div").datum(d).attr("name", "range").html(d.range);
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grid.append("div").append("input").datum(d).attr("type", "text").style("margin", "2px 0px").property("value", d.label).on("change", function() {
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d.label = this.value;
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});
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}
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this.dom.customBinRanges = this.dom.inputsDiv.selectAll('div[name="range"]');
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this.dom.customBinLabelInput = this.dom.inputsDiv.selectAll("input");
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this.handler.density.setBinLines(this.getBoundaryOpts());
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}
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processBinaryBinInputs() {
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const inclusive = this.dom.boundaryInclusionSelect.property("value");
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const startinclusive = inclusive == "startinclusive";
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startunbounded: true,
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stopinclusive
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};
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start: Number(val),
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startinclusive,
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stopunbounded: true
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};
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const bins = [
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{
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...firstBin,
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label: get_bin_label(firstBin, this.q),
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range: get_bin_range_equation(firstBin, this.tw.q)
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},
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{
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label: get_bin_label(lastBin, this.q),
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range: get_bin_range_equation(lastBin, this.tw.q)
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}
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];
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return bins;
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}
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getEditedQ(destroyDom = true) {
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const lst = this.processBinaryBinInputs();
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if (destroyDom) {
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for (const name of Object.keys(this.dom)) {
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this.dom[name].remove();
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delete this.dom[name];
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}
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}
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return {
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mode: "binary",
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type: "custom-bin",
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lst
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};
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}
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async undoEdits() {
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this.q = this.getDefaultQ();
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await this.handler.density.setBinLines(this.getBoundaryOpts());
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this.dom.inputsDiv.selectAll("*").remove();
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this.renderBoundaryInclusionSelect();
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this.renderCutoffInput();
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this.renderBoundaryInputDivs();
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}
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};
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export {
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NumBinaryEditor
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};
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//# sourceMappingURL=NumBinaryEditor-AL2NWII2.js.map
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@@ -1,286 +0,0 @@
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import {
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agedx
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} from "./chunk-32AI7I4C.js";
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import {
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NumericHandler
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} from "./chunk-PJSOYF5U.js";
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import "./chunk-MNIBZTQE.js";
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import {
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termjson
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} from "./chunk-DHPLHIVP.js";
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import {
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sleep
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} from "./chunk-ECIBJXFT.js";
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require_tape
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} from "./chunk-TUMA63WX.js";
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import {
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TwRouter
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} from "./chunk-JHZK6IDA.js";
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import "./chunk-KYBIQBXE.js";
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import {
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|
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select_default
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|
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} from "./chunk-I6Y4O3RR.js";
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|
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import "./chunk-OMR2DT66.js";
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import "./chunk-DQC5FFGV.js";
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import {
|
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|
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__toESM
|
|
53
|
-
} from "./chunk-HFNDKYVF.js";
|
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|
-
|
|
55
|
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// termsetting/handlers/test/NumBinaryEditor.unit.spec.ts
|
|
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|
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var import_tape = __toESM(require_tape(), 1);
|
|
57
|
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var pct50 = 6.3475409836;
|
|
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|
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var pct70 = 1000.36986301355;
|
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|
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async function getNumericHandler(opts = {}) {
|
|
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|
-
const term = JSON.parse(JSON.stringify(termjson.agedx));
|
|
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|
-
const rawTw = {
|
|
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|
-
term,
|
|
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|
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q: {
|
|
64
|
-
mode: "binary"
|
|
65
|
-
}
|
|
66
|
-
};
|
|
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|
-
let handler = {};
|
|
68
|
-
const vocabApi = {
|
|
69
|
-
state: {
|
|
70
|
-
termfilter: { filter: { type: "tvslst", in: "", lst: [] } }
|
|
71
|
-
},
|
|
72
|
-
getViolinBox() {
|
|
73
|
-
return agedx;
|
|
74
|
-
},
|
|
75
|
-
getPercentile() {
|
|
76
|
-
return {
|
|
77
|
-
values: handler?.editHandler?.q.cutoffPercentile === 70 ? [pct70] : [pct50]
|
|
78
|
-
};
|
|
79
|
-
}
|
|
80
|
-
};
|
|
81
|
-
const tw = await TwRouter.initRaw(rawTw, { vocabApi });
|
|
82
|
-
handler = new NumericHandler({
|
|
83
|
-
termsetting: {
|
|
84
|
-
tw,
|
|
85
|
-
term: rawTw.term,
|
|
86
|
-
q: rawTw.q,
|
|
87
|
-
opts: {
|
|
88
|
-
numericEditMenuVersion: ["binary"],
|
|
89
|
-
usecase: opts.usecase
|
|
90
|
-
},
|
|
91
|
-
api: {
|
|
92
|
-
runCallback() {
|
|
93
|
-
}
|
|
94
|
-
},
|
|
95
|
-
dom: {
|
|
96
|
-
tip: {
|
|
97
|
-
hide() {
|
|
98
|
-
}
|
|
99
|
-
}
|
|
100
|
-
},
|
|
101
|
-
vocabApi
|
|
102
|
-
}
|
|
103
|
-
});
|
|
104
|
-
handler.density_data = { min: 0, max: 100 };
|
|
105
|
-
const holder = select_default("body").append("div").style("position", "relative").style("width", "fit-content").style("margin", "20px").style("padding", "5px").style("border", "1px solid #000");
|
|
106
|
-
handler.dom.editDiv = holder;
|
|
107
|
-
await handler.setEditHandler(handler.tabs[0]);
|
|
108
|
-
return {
|
|
109
|
-
rawTw,
|
|
110
|
-
tw,
|
|
111
|
-
handler,
|
|
112
|
-
editHandler: handler.editHandler,
|
|
113
|
-
holder,
|
|
114
|
-
destroy: () => {
|
|
115
|
-
if ("destroy" in handler.editHandler) handler.editHandler.destroy();
|
|
116
|
-
if (typeof handler.destroy == "function") handler.destroy();
|
|
117
|
-
holder.remove();
|
|
118
|
-
}
|
|
119
|
-
};
|
|
120
|
-
}
|
|
121
|
-
(0, import_tape.default)("\n", (test) => {
|
|
122
|
-
test.comment("-***- NumBinaryEditor.unit.spec -***-");
|
|
123
|
-
test.end();
|
|
124
|
-
});
|
|
125
|
-
(0, import_tape.default)("handler methods", async (test) => {
|
|
126
|
-
const { editHandler, destroy } = await getNumericHandler();
|
|
127
|
-
editHandler.termsetting.tw.q = { mode: "continuous" };
|
|
128
|
-
test.deepEqual(
|
|
129
|
-
await editHandler.getDefaultQ(),
|
|
130
|
-
{
|
|
131
|
-
mode: "binary",
|
|
132
|
-
type: "custom-bin",
|
|
133
|
-
lst: [
|
|
134
|
-
{
|
|
135
|
-
startunbounded: true,
|
|
136
|
-
startinclusive: false,
|
|
137
|
-
stopinclusive: false,
|
|
138
|
-
stop: 50,
|
|
139
|
-
label: "<50",
|
|
140
|
-
range: '<span style="font-family:Times;font-style:italic;">x</span> <50'
|
|
141
|
-
},
|
|
142
|
-
{
|
|
143
|
-
stopunbounded: true,
|
|
144
|
-
startinclusive: true,
|
|
145
|
-
stopinclusive: false,
|
|
146
|
-
start: 50,
|
|
147
|
-
label: "\u226550",
|
|
148
|
-
range: '<span style="font-family:Times;font-style:italic;">x</span> \u226550'
|
|
149
|
-
}
|
|
150
|
-
],
|
|
151
|
-
cutoffType: "normal"
|
|
152
|
-
},
|
|
153
|
-
"should give the expected defaultQ"
|
|
154
|
-
);
|
|
155
|
-
if (test._ok) destroy();
|
|
156
|
-
test.end();
|
|
157
|
-
});
|
|
158
|
-
(0, import_tape.default)("initial rendered UI", async (test) => {
|
|
159
|
-
const { editHandler, holder, destroy } = await getNumericHandler();
|
|
160
|
-
await editHandler.showEditMenu(holder);
|
|
161
|
-
test.equal(editHandler.dom?.density_div.selectAll("svg").size(), 1, `should render a density plot svg`);
|
|
162
|
-
test.equal(
|
|
163
|
-
editHandler.dom.boundaryInclusionDiv.selectAll("option").size(),
|
|
164
|
-
2,
|
|
165
|
-
`should render a boundary inclusion dropdown with 2 options`
|
|
166
|
-
);
|
|
167
|
-
test.equal(
|
|
168
|
-
editHandler.dom.cutoff_div.selectAll(`input[type='number']`).size(),
|
|
169
|
-
2,
|
|
170
|
-
`should render cutoff inputs, absolute and in percentile`
|
|
171
|
-
);
|
|
172
|
-
test.equal(
|
|
173
|
-
editHandler.dom.cutoff_div.selectAll(`input[type='checkbox']`).size(),
|
|
174
|
-
1,
|
|
175
|
-
`should render cutoff option for percentile`
|
|
176
|
-
);
|
|
177
|
-
test.equal(editHandler.dom.cutoffInputPercentile.style("display"), "none", `should hide percentile input by default`);
|
|
178
|
-
editHandler.dom.cutoffPercentileCheckbox.property("checked", true);
|
|
179
|
-
editHandler.dom.cutoffPercentileCheckbox.node().dispatchEvent(new Event("input", { bubbles: true }));
|
|
180
|
-
await sleep(0);
|
|
181
|
-
test.equal(
|
|
182
|
-
editHandler.dom.cutoffInputPercentile.style("display"),
|
|
183
|
-
"inline-block",
|
|
184
|
-
`should show the percentile input when the checkbox is checked`
|
|
185
|
-
);
|
|
186
|
-
test.equal(
|
|
187
|
-
editHandler.dom.cutoffInputPercentile.property("value"),
|
|
188
|
-
"50",
|
|
189
|
-
`should default to 50% percentile input value`
|
|
190
|
-
);
|
|
191
|
-
const newCutoff = 6.3475409836;
|
|
192
|
-
const ranges = editHandler.dom.inputsDiv.node().querySelectorAll('div[name="range"]');
|
|
193
|
-
test.equal(ranges[0].innerText, `x \u2264${newCutoff}`, `should render the expected first bin range`);
|
|
194
|
-
test.equal(ranges[1].innerText, `x >${newCutoff}`, `should render the expected last bin range`);
|
|
195
|
-
const binInputs = editHandler.dom.inputsDiv.node().querySelectorAll("input");
|
|
196
|
-
test.equal(binInputs[0].value, `\u2264${newCutoff}`, `should render the expected first bin input value`);
|
|
197
|
-
test.equal(binInputs[1].value, `>${newCutoff}`, `should render the expected last bin input value`);
|
|
198
|
-
if (test._ok) destroy();
|
|
199
|
-
test.end();
|
|
200
|
-
});
|
|
201
|
-
(0, import_tape.default)("cutoff interactivity", async (test) => {
|
|
202
|
-
const { editHandler, holder, destroy } = await getNumericHandler();
|
|
203
|
-
await editHandler.showEditMenu(holder);
|
|
204
|
-
const lines = editHandler.handler.density.dom.binsize_g.selectAll("line");
|
|
205
|
-
test.equal(lines.size(), 1, `should render only one draggable line in the density plot`);
|
|
206
|
-
const line = lines.node();
|
|
207
|
-
const x1 = Number(line.getAttribute("x1"));
|
|
208
|
-
editHandler.dom.boundaryInclusionSelect.property("value", "startinclusive");
|
|
209
|
-
editHandler.dom.boundaryInclusionSelect.node().dispatchEvent(new Event("change", { bubbles: true }));
|
|
210
|
-
const newCutoff = 500;
|
|
211
|
-
editHandler.dom.cutoffInput.property("value", newCutoff);
|
|
212
|
-
editHandler.dom.cutoffInput.node().dispatchEvent(new Event("change", { bubbles: true }));
|
|
213
|
-
const ranges = editHandler.dom.inputsDiv.node().querySelectorAll('div[name="range"]');
|
|
214
|
-
test.equal(ranges[0].innerText, `x <${newCutoff}`, `should render the expected first bin range`);
|
|
215
|
-
test.equal(ranges[1].innerText, `x \u2265${newCutoff}`, `should render the expected last bin range`);
|
|
216
|
-
const binInputs = editHandler.dom.inputsDiv.node().querySelectorAll("input");
|
|
217
|
-
test.equal(binInputs[0].value, `<${newCutoff}`, `should render the expected first bin input value`);
|
|
218
|
-
test.equal(binInputs[1].value, `\u2265${newCutoff}`, `should render the expected last bin input value`);
|
|
219
|
-
const line2 = editHandler.handler.density.dom.binsize_g.select("line").node();
|
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|
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test.true(x1 <= Number(line2.getAttribute("x1")), "should trigger the density line to move to the right");
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editHandler.dom.cutoffPercentileCheckbox.property("checked", true);
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editHandler.dom.cutoffPercentileCheckbox.node().dispatchEvent(new Event("input", { bubbles: true }));
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editHandler.dom.cutoffInputPercentile.property("value", 70);
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editHandler.dom.cutoffInputPercentile.node().dispatchEvent(new Event("change", { bubbles: true }));
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await sleep(0);
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{
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const lines2 = [...editHandler.handler.density.dom.binsize_g.node().querySelectorAll("line")];
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test.deepEqual(
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|
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lines2.map((l) => l.getAttribute("x1")),
|
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["116"],
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`should re-render a draggable line in the updated x-position`
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);
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const ranges2 = editHandler.dom.inputsDiv.node().querySelectorAll('div[name="range"]');
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test.equal(ranges2[0].innerText, `x <${pct70}`, `should render the expected first bin range`);
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test.equal(ranges2[1].innerText, `x \u2265${pct70}`, `should render the expected last bin range`);
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const binInputs2 = editHandler.dom.inputsDiv.node().querySelectorAll("input");
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test.equal(binInputs2[0].value, `<${pct70}`, `should render the expected first bin input value`);
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test.equal(binInputs2[1].value, `\u2265${pct70}`, `should render the expected last bin input value`);
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|
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}
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test.deepEqual(
|
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|
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editHandler.getEditedQ(false),
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{
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mode: "binary",
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type: "custom-bin",
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|
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lst: [
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|
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{
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startunbounded: true,
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stop: pct70,
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startinclusive: false,
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stopinclusive: false,
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label: `<${pct70}`,
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range: `<span style="font-family:Times;font-style:italic;">x</span> <${pct70}`
|
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|
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},
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|
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{
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|
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start: pct70,
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|
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startinclusive: true,
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|
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|
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stopinclusive: false,
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|
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stopunbounded: true,
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|
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label: `\u2265${pct70}`,
|
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|
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range: `<span style="font-family:Times;font-style:italic;">x</span> \u2265${pct70}`
|
|
261
|
-
}
|
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262
|
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]
|
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|
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},
|
|
264
|
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`should give the expected edited q object`
|
|
265
|
-
);
|
|
266
|
-
const density_div = editHandler.dom.density_div.node();
|
|
267
|
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await editHandler.showEditMenu(holder);
|
|
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|
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test.equal(
|
|
269
|
-
density_div,
|
|
270
|
-
editHandler.dom.density_div.node(),
|
|
271
|
-
`should not re-render the menu when the holder has not changed`
|
|
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|
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);
|
|
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|
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await editHandler.undoEdits();
|
|
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|
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await sleep(0);
|
|
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|
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{
|
|
276
|
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const lines2 = [...editHandler.handler.density.dom.binsize_g.node().querySelectorAll("line")];
|
|
277
|
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test.deepEqual(
|
|
278
|
-
lines2.map((l) => l.getAttribute("x1")),
|
|
279
|
-
["11"],
|
|
280
|
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`should render a draggable line in the expected x-position`
|
|
281
|
-
);
|
|
282
|
-
}
|
|
283
|
-
if (test._ok) destroy();
|
|
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|
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test.end();
|
|
285
|
-
});
|
|
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|
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//# sourceMappingURL=NumBinaryEditor.unit.spec-NFRJHFNX.js.map
|
|
@@ -1,109 +0,0 @@
|
|
|
1
|
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import {
|
|
2
|
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make_one_checkbox
|
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3
|
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} from "./chunk-JHZK6IDA.js";
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|
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import "./chunk-HJ6L54YS.js";
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import {
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HandlerBase
|
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|
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} from "./chunk-LSEFWW72.js";
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import "./chunk-FYY3T565.js";
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import "./chunk-HYOEWQ5P.js";
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import "./chunk-HBW42TDT.js";
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|
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import "./chunk-FN5XPUPH.js";
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import "./chunk-LQJMCE7G.js";
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import "./chunk-IIT367QZ.js";
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import "./chunk-RZGEKL77.js";
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import "./chunk-7Z6E3NA5.js";
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import "./chunk-V2ET64EJ.js";
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import "./chunk-5ERYRSVV.js";
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|
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import "./chunk-7IYJZZQI.js";
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|
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import "./chunk-M3J4MINX.js";
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|
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import "./chunk-PF4DSFDR.js";
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|
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import "./chunk-23AEAG37.js";
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|
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import "./chunk-M2PPUO4E.js";
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|
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import "./chunk-ZRSJVACE.js";
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|
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import "./chunk-BKPDYW5T.js";
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|
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|
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import "./chunk-JNITUVXP.js";
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|
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|
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import "./chunk-TJYRBEBK.js";
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|
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|
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import "./chunk-LOZEKOES.js";
|
|
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|
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import "./chunk-VQZ2Z5YU.js";
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|
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|
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import "./chunk-SOTB4FRE.js";
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|
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|
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import "./chunk-TLT4YIG3.js";
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|
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|
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import "./chunk-KYBIQBXE.js";
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|
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|
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import "./chunk-I6Y4O3RR.js";
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|
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import "./chunk-OMR2DT66.js";
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|
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|
-
import "./chunk-DQC5FFGV.js";
|
|
35
|
-
import "./chunk-HFNDKYVF.js";
|
|
36
|
-
|
|
37
|
-
// termsetting/handlers/NumContEditor.ts
|
|
38
|
-
var NumContEditor = class extends HandlerBase {
|
|
39
|
-
constructor(opts, handler) {
|
|
40
|
-
super(opts);
|
|
41
|
-
this.dom = {};
|
|
42
|
-
this.termsetting = opts.termsetting;
|
|
43
|
-
this.tw = opts.termsetting.tw;
|
|
44
|
-
this.handler = handler;
|
|
45
|
-
this.q = this.setDefaultQ();
|
|
46
|
-
}
|
|
47
|
-
setDefaultQ() {
|
|
48
|
-
if (this.tw.q.mode == "continuous") return JSON.parse(JSON.stringify(this.tw.q));
|
|
49
|
-
return { mode: "continuous" };
|
|
50
|
-
}
|
|
51
|
-
async showEditMenu(div) {
|
|
52
|
-
this.tw = this.handler.tw;
|
|
53
|
-
this.q = this.setDefaultQ();
|
|
54
|
-
if (this.dom.inputsDiv) {
|
|
55
|
-
if (div.node().contains(this.dom.inputsDiv.node())) return;
|
|
56
|
-
else delete this.dom.inputsDiv;
|
|
57
|
-
}
|
|
58
|
-
this.dom.density_div = div.append("div");
|
|
59
|
-
await this.handler.density.showViolin(this.dom.density_div);
|
|
60
|
-
this.dom.inputsDiv = div.append("div");
|
|
61
|
-
if (this.termsetting.opts.usecase?.target == "matrix") {
|
|
62
|
-
this.dom.convert2ZCheckbox = await make_one_checkbox({
|
|
63
|
-
holder: this.dom.inputsDiv.append("div"),
|
|
64
|
-
labeltext: "Convert to Z-score",
|
|
65
|
-
checked: this.q.convert2ZScore ? true : false,
|
|
66
|
-
divstyle: { display: "inline-block", padding: "3px 10px" },
|
|
67
|
-
callback: (checked) => {
|
|
68
|
-
this.q.convert2ZScore = checked;
|
|
69
|
-
if (checked) {
|
|
70
|
-
this.dom.scaleSelect.property("value", 1);
|
|
71
|
-
delete this.q.scale;
|
|
72
|
-
}
|
|
73
|
-
}
|
|
74
|
-
});
|
|
75
|
-
}
|
|
76
|
-
const selectDiv = this.dom.inputsDiv.append("div").style("display", "inline-block");
|
|
77
|
-
selectDiv.append("div").style("display", "inline-block").style("padding", "3px 10px").html("Scale values");
|
|
78
|
-
this.dom.scaleSelect = selectDiv.append("select").on("change", (event) => {
|
|
79
|
-
if (event.target.value == "1") delete this.q.scale;
|
|
80
|
-
else {
|
|
81
|
-
if (this.dom.convert2ZCheckbox) this.dom.convert2ZCheckbox.property("checked", false);
|
|
82
|
-
this.q.scale = Number(event.target.value);
|
|
83
|
-
}
|
|
84
|
-
});
|
|
85
|
-
this.dom.scaleSelect.selectAll("option").data([
|
|
86
|
-
{ html: "No Scaling", value: 1 },
|
|
87
|
-
{ html: "Per 10", value: 10 },
|
|
88
|
-
{ html: "Per 100", value: 100 },
|
|
89
|
-
{ html: "Per 1000", value: 1e3 }
|
|
90
|
-
]).enter().append("option").attr("value", (d) => d.value).html((d) => d.html).property("selected", (d) => "scale" in this.q && d.value == this.q.scale);
|
|
91
|
-
}
|
|
92
|
-
getEditedQ() {
|
|
93
|
-
const scaleValue = this.dom.scaleSelect.property("value");
|
|
94
|
-
if (scaleValue == "1") delete this.q.scale;
|
|
95
|
-
else this.q.scale = Number(scaleValue);
|
|
96
|
-
if (this.dom.convert2ZCheckbox) this.q.convert2ZScore = this.dom.convert2ZCheckbox.property("checked");
|
|
97
|
-
return this.q;
|
|
98
|
-
}
|
|
99
|
-
destroy() {
|
|
100
|
-
for (const name of Object.keys(this.dom)) {
|
|
101
|
-
this.dom[name].remove();
|
|
102
|
-
delete this.dom[name];
|
|
103
|
-
}
|
|
104
|
-
}
|
|
105
|
-
};
|
|
106
|
-
export {
|
|
107
|
-
NumContEditor
|
|
108
|
-
};
|
|
109
|
-
//# sourceMappingURL=NumContEditor-CTFJVIHU.js.map
|