@sjcrh/proteinpaint-client 2.195.0 → 2.196.0

package/dist/chunk-JFRSVFWO.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../plots/gsea.js"],
+  "sourcesContent": ["import * as d3axis from 'd3-axis'\nimport { Menu, renderTable, table2col, axisstyle, sayerror } from '#dom'\nimport { dofetch3 } from '#common/dofetch'\nimport { controlsInit } from './controls'\nimport { getCompInit, copyMerge } from '#rx'\nimport { scaleLinear } from 'd3-scale'\nimport { roundValueAuto } from '#shared/roundValue.js'\nimport { VolcanoModel } from '#plots/volcano/model/VolcanoModel.ts'\nimport { getDefaultVolcanoSettings } from '#plots/volcano/settings/defaults.ts'\nimport { PlotBase } from '#plots/PlotBase.js'\nimport { getCombinedTermFilter } from '#filter'\nimport { PROTEOME_DAP, SINGLECELL_CELLTYPE } from '#types'\n\nconst tip = new Menu()\n\nclass gsea extends PlotBase {\n\tstatic type = 'gsea'\n\n\tconstructor(opts) {\n\t\tsuper(opts)\n\t\tthis.type = gsea.type\n\t\tthis.opts = opts\n\t\tthis.components = {\n\t\t\tcontrols: {}\n\t\t}\n\t\t//Either allow a node to be passed or create a new div\n\t\tconst controlsDiv =\n\t\t\ttypeof opts.controls == 'object' ? opts.controls : opts.holder.append('div').style('display', 'inline-block')\n\t\tconst main = opts.holder.append('div').style('display', 'inline-block')\n\t\tconst actionsDiv = main\n\t\t\t.append('div')\n\t\t\t.attr('data-testid', 'sjpp-gsea-actions')\n\t\t\t.style('margin', '10px')\n\t\t\t.style('text-align', 'left')\n\t\tconst loadingDiv = main\n\t\t\t.append('div')\n\t\t\t.attr('data-testid', 'sjpp-gsea-loading')\n\t\t\t.style('text-align', 'center')\n\t\t\t.style('display', 'none')\n\t\t\t.style('margin', '10px')\n\t\t\t.style('text-align', 'left')\n\t\t\t.text('Loading...')\n\t\tconst holder = main\n\t\t\t.append('div')\n\t\t\t.style('margin-left', '50px')\n\t\t\t.style('display', 'inline-block')\n\t\t\t.attr('data-testid', 'sjpp-gsea-holder')\n\t\tconst detailsDiv = main\n\t\t\t.append('div')\n\t\t\t.attr('data-testid', 'sjpp-gsea-details')\n\t\t\t.style('display', 'inline-block')\n\t\t\t.style('vertical-align', 'top')\n\t\t\t.style('margin-top', '50px')\n\n\t\tconst tableDiv = main.append('div').style('margin', '10px').attr('data-testid', 'sjpp-gsea-results-table')\n\n\t\tthis.dom = {\n\t\t\tholder,\n\t\t\theader: opts.header,\n\t\t\tactionsDiv,\n\t\t\tloadingDiv,\n\t\t\tcontrolsDiv,\n\t\t\tdetailsDiv,\n\t\t\ttableDiv\n\t\t}\n\t}\n\n\tasync setControls() {\n\t\tthis.dom.controlsDiv.selectAll('*').remove()\n\t\tconst inputs = [\n\t\t\t{\n\t\t\t\tlabel: 'Minimum Gene Set Size Filter Cutoff',\n\t\t\t\ttype: 'number',\n\t\t\t\tchartType: 'gsea',\n\t\t\t\tsettingsKey: 'min_gene_set_size_cutoff',\n\t\t\t\ttitle: 'Minimum Gene set size cutoff. Helps in filtering out small gene sets',\n\t\t\t\tmin: 0\n\t\t\t},\n\t\t\t{\n\t\t\t\tlabel: 'Maximum Gene Set Size Filter Cutoff',\n\t\t\t\ttype: 'number',\n\t\t\t\tchartType: 'gsea',\n\t\t\t\tsettingsKey: 'max_gene_set_size_cutoff',\n\t\t\t\ttitle: 'Maximum Gene set size cutoff. Helps in filtering out large gene sets',\n\t\t\t\tmax: 25000\n\t\t\t},\n\t\t\t{\n\t\t\t\tlabel: 'Filter Non-coding Genes',\n\t\t\t\ttype: 'checkbox',\n\t\t\t\tchartType: 'gsea',\n\t\t\t\tsettingsKey: 'filter_non_coding_genes',\n\t\t\t\ttitle: 'Filter non-coding genes',\n\t\t\t\tboxLabel: ''\n\t\t\t},\n\t\t\t{\n\t\t\t\tlabel: 'FDR or Top Gene Sets',\n\t\t\t\ttype: 'radio',\n\t\t\t\tchartType: 'gsea',\n\t\t\t\tsettingsKey: 'fdr_or_top',\n\t\t\t\ttitle: 'Toggle between FDR cutoff and top gene sets in ascending order of FDR',\n\t\t\t\toptions: [\n\t\t\t\t\t{ label: 'FDR', value: 'fdr' },\n\t\t\t\t\t{ label: 'Top Gene Sets', value: 'top' }\n\t\t\t\t]\n\t\t\t}\n\t\t]\n\n\t\tif (JSON.parse(sessionStorage.getItem('optionalFeatures')).gsea_test) {\n\t\t\tinputs.push({\n\t\t\t\tlabel: 'GSEA method',\n\t\t\t\ttype: 'radio',\n\t\t\t\tchartType: 'gsea',\n\t\t\t\tsettingsKey: 'gsea_method',\n\t\t\t\ttitle: 'Toggle between blitzgsea and CERNO method',\n\t\t\t\toptions: [\n\t\t\t\t\t{ label: 'blitzgsea', value: 'blitzgsea' },\n\t\t\t\t\t{ label: 'CERNO', value: 'cerno' }\n\t\t\t\t]\n\t\t\t})\n\t\t}\n\t\tif (this.settings.gsea_method == 'blitzgsea') {\n\t\t\tinputs.push({\n\t\t\t\tlabel: 'Number of Permutations',\n\t\t\t\ttype: 'number',\n\t\t\t\tchartType: 'gsea',\n\t\t\t\tsettingsKey: 'num_permutations',\n\t\t\t\ttitle: 'Number of permutations to be used for GSEA. Higher number increases accuracy but also compute time.',\n\t\t\t\tmin: 0,\n\t\t\t\tmax: 40000 // Setting it to pretty lenient limit for testing\n\t\t\t})\n\t\t}\n\t\tif (this.settings.fdr_or_top == 'fdr') {\n\t\t\tinputs.push({\n\t\t\t\tlabel: 'FDR Filter Cutoff (Linear Scale)',\n\t\t\t\ttype: 'number',\n\t\t\t\tchartType: 'gsea',\n\t\t\t\tsettingsKey: 'fdr_cutoff',\n\t\t\t\ttitle: 'P-value significance',\n\t\t\t\tmin: 0,\n\t\t\t\tmax: 1\n\t\t\t})\n\t\t} else if (this.settings.fdr_or_top == 'top') {\n\t\t\tinputs.push({\n\t\t\t\tlabel: 'Number of top Gene Sets by FDR',\n\t\t\t\ttype: 'number',\n\t\t\t\tchartType: 'gsea',\n\t\t\t\tsettingsKey: 'top_genesets',\n\t\t\t\ttitle: 'Number of top gene sets to be displayed in ascending order of FDR',\n\t\t\t\tmin: 0,\n\t\t\t\tmax: 5000\n\t\t\t})\n\t\t} else {\n\t\t\tthrow 'unknown FDR/top option'\n\t\t}\n\n\t\tthis.components.controls = await controlsInit({\n\t\t\tapp: this.app,\n\t\t\tid: this.id,\n\t\t\tholder: this.dom.controlsDiv,\n\t\t\tinputs: inputs\n\t\t})\n\n\t\tthis.components.controls.on('downloadClick.gsea', () => {\n\t\t\tif (!this.imageUrl) return alert('No image to download')\n\t\t\tconst dataUrl = this.imageUrl\n\t\t\tconst downloadImgName = `${this.state.config.gsea_params.geneset_name || ''}_GSEA_IMG`\n\t\t\tconst a = document.createElement('a')\n\t\t\tdocument.body.appendChild(a)\n\n\t\t\ta.addEventListener(\n\t\t\t\t'click',\n\t\t\t\t() => {\n\t\t\t\t\t// Download the image\n\t\t\t\t\ta.download = downloadImgName + '.png'\n\t\t\t\t\ta.href = dataUrl\n\t\t\t\t\tdocument.body.removeChild(a)\n\t\t\t\t},\n\t\t\t\tfalse\n\t\t\t)\n\t\t\ta.click()\n\t\t})\n\t}\n\n\tgetState(appState) {\n\t\tconst config = appState.plots.find(p => p.id === this.id)\n\t\tif (!config) throw `No plot with id='${this.id}' found`\n\t\tconst parentConfig = appState.plots.find(p => p.id === this.parentId)\n\t\tconst termfilter = getCombinedTermFilter(appState, config.filter || parentConfig?.filter)\n\n\t\treturn {\n\t\t\tconfig,\n\t\t\ttermfilter\n\t\t}\n\t}\n\n\t/** This allows the gsea to run independently. If the DE data\n\t * was already requested (e.g. in the DA from the volcano plot),\n\t * the cached response returns rather than running the DE\n\t * route again.\n\t *\n\t * Also allows loading the gsea from a mass session file without\n\t * error. */\n\tasync init(appState) {\n\t\tconst config = appState.plots.find(p => p.id === this.id)\n\t\tif (!config.gsea_params) {\n\t\t\ttry {\n\t\t\t\tif (config.termType === PROTEOME_DAP) {\n\t\t\t\t\tawait this.app.save({\n\t\t\t\t\t\ttype: 'plot_edit',\n\t\t\t\t\t\tid: this.id,\n\t\t\t\t\t\tconfig: {\n\t\t\t\t\t\t\tgsea_params: {\n\t\t\t\t\t\t\t\tdapParams: config.proteomeDetails,\n\t\t\t\t\t\t\t\tgenome: this.app.vocabApi.opts.state.vocab.genome,\n\t\t\t\t\t\t\t\tdslabel: this.app.vocabApi.vocab.dslabel\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t})\n\t\t\t\t} else if (config.termType === SINGLECELL_CELLTYPE) {\n\t\t\t\t\t// SCCT has no DA cache \u2014 fetch the full DE gene list for the\n\t\t\t\t\t// chosen cluster (omit volcanoRender so the route returns the\n\t\t\t\t\t// raw gene array, not the threshold-passing `dots` subset)\n\t\t\t\t\t// and pass genes + fold_change inline. `render_gsea` takes\n\t\t\t\t\t// this path when neither cacheId nor dapParams is set.\n\t\t\t\t\tconst body = {\n\t\t\t\t\t\tgenome: this.app.vocabApi.vocab.genome,\n\t\t\t\t\t\tdslabel: this.app.vocabApi.vocab.dslabel,\n\t\t\t\t\t\tsample: config.sample,\n\t\t\t\t\t\ttermId: config.termId,\n\t\t\t\t\t\tcategoryName: config.categoryName\n\t\t\t\t\t}\n\t\t\t\t\tconst response = await dofetch3('termdb/singlecellDEgenes', { body, signal: this.api?.getAbortSignal() })\n\t\t\t\t\tif (response.error) throw response.error\n\t\t\t\t\tif (!Array.isArray(response.data) || response.data.length === 0) throw 'No DE genes returned for this cluster'\n\t\t\t\t\tconst genes = []\n\t\t\t\t\tconst fold_change = []\n\t\t\t\t\tfor (const g of response.data) {\n\t\t\t\t\t\tgenes.push(g.gene_name)\n\t\t\t\t\t\tfold_change.push(g.fold_change)\n\t\t\t\t\t}\n\t\t\t\t\tawait this.app.save({\n\t\t\t\t\t\ttype: 'plot_edit',\n\t\t\t\t\t\tid: this.id,\n\t\t\t\t\t\tconfig: {\n\t\t\t\t\t\t\tgsea_params: {\n\t\t\t\t\t\t\t\tgenes,\n\t\t\t\t\t\t\t\tfold_change,\n\t\t\t\t\t\t\t\tgenes_length: genes.length,\n\t\t\t\t\t\t\t\tgenome: this.app.vocabApi.opts.state.vocab.genome\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t})\n\t\t\t\t} else {\n\t\t\t\t\tconst volcanoSettings =\n\t\t\t\t\t\tconfig.settings?.volcano || getDefaultVolcanoSettings({}, { termType: 'geneExpression' })\n\t\t\t\t\tconst model = new VolcanoModel(this, config.termType)\n\t\t\t\t\tconst response = await model.getData(config, volcanoSettings)\n\t\t\t\t\tif (!response?.data?.cacheId || response.error) {\n\t\t\t\t\t\tthrow response.error || 'No DE cacheId returned from volcano model'\n\t\t\t\t\t}\n\t\t\t\t\tawait this.app.save({\n\t\t\t\t\t\ttype: 'plot_edit',\n\t\t\t\t\t\tid: this.id,\n\t\t\t\t\t\tconfig: {\n\t\t\t\t\t\t\tgsea_params: {\n\t\t\t\t\t\t\t\tcacheId: response.data.cacheId,\n\t\t\t\t\t\t\t\t// Snapshot of the DE request so the server can regenerate\n\t\t\t\t\t\t\t\t// the cache if this GSEA request lands on a peer node or\n\t\t\t\t\t\t\t\t// arrives after the cache TTL has expired.\n\t\t\t\t\t\t\t\tdaRequest: response.daRequest,\n\t\t\t\t\t\t\t\tgenes_length: response.data.totalRows,\n\t\t\t\t\t\t\t\tgenome: this.app.vocabApi.opts.state.vocab.genome,\n\t\t\t\t\t\t\t\t// Sending dslabel at the top level makes the global\n\t\t\t\t\t\t\t\t// auth middleware populate clientAuthResult on this\n\t\t\t\t\t\t\t\t// request the same way it did for the volcano\n\t\t\t\t\t\t\t\t// request, so the server can re-apply the same\n\t\t\t\t\t\t\t\t// auth-filter injection to daRequest before hashing.\n\t\t\t\t\t\t\t\tdslabel: this.app.vocabApi.vocab.dslabel\n\t\t\t\t\t\t\t}\n\t\t\t\t\t\t}\n\t\t\t\t\t})\n\t\t\t\t}\n\t\t\t} catch (e) {\n\t\t\t\tif (e instanceof Error) console.error(e.message || e)\n\t\t\t\telse if (e.stack) console.log(e.stack)\n\t\t\t\tthrow e\n\t\t\t}\n\t\t}\n\t}\n\n\treactsTo(action) {\n\t\tif (action.type.startsWith('plot_')) {\n\t\t\treturn (\n\t\t\t\t(action.id === this.id || action.id == this.parentId) &&\n\t\t\t\t(!action.config?.childType || action.config?.childType == this.type)\n\t\t\t)\n\t\t}\n\t}\n\n\tasync main() {\n\t\t//Not not use structuredClone(this.state.config)\n\t\t//Does not include the plot config changes in init()\n\t\tconst config = this.app.getState().plots.find(p => p.id === this.id)\n\t\tthis.config = structuredClone(config)\n\t\tif (this.config.chartType != this.type && this.config.childType != this.type) return\n\t\tthis.settings = this.config.settings.gsea\n\n\t\tthis.imageUrl = null // Reset the image URL\n\t\tawait this.setControls()\n\t\tif (this.dom.header) {\n\t\t\tconst geneCount = this.config.gsea_params.genes_length ?? this.config.gsea_params.genes?.length ?? 0\n\t\t\tthis.dom.header.html(\n\t\t\t\tgeneCount + ' genes <span style=\"font-size:.8em;opacity:.7\">GENE SET ENRICHMENT ANALYSIS</span>'\n\t\t\t)\n\t\t}\n\t\trender_gsea(this)\n\t}\n}\n\nasync function renderPathwayDropdown(self) {\n\tconst settings = structuredClone(self.settings)\n\tconst pathwayOpts = structuredClone(self.app.opts.genome.termdbs.msigdb.analysisGenesetGroups) // duplicate to avoid repeated insertion on each app launch\n\n\tif (JSON.parse(sessionStorage.getItem('optionalFeatures')).gsea_test && self.settings.gsea_method == 'blitzgsea') {\n\t\t// This contains geneset groups that are specific to blitzgsea itself\n\t\t// TEMPORARY FIX to test this library that will trigger auto download support files in python\n\t\t// NEVER ENABLE ON PROD especially gdc prod, where container has firewall and it crashes..\n\t\t// delete this if library is replaced\n\t\tpathwayOpts.push(\n\t\t\t{ label: 'REACTOME (blitzgsea)', value: 'REACTOME--blitzgsea' },\n\t\t\t{ label: 'KEGG (blitzgsea)', value: 'KEGG--blitzgsea' },\n\t\t\t{ label: 'WikiPathways (blitzgsea)', value: 'WikiPathways--blitzgsea' }\n\t\t)\n\t}\n\n\tif (settings.pathway) {\n\t\tpathwayOpts.shift()\n\t\tpathwayOpts.find(opt => opt.value == settings.pathway).selected = true\n\t}\n\n\tself.dom.actionsDiv\n\t\t.append('span')\n\t\t.attr('data-testid', 'sjpp-gsea-pathway')\n\t\t.style('margin-right', '10px')\n\t\t.text('Select a gene set group:')\n\n\tconst dropdown = self.dom.actionsDiv.append('select').on('change', event => {\n\t\tif (!settings.pathway) {\n\t\t\t//Remove placeholder from dropdown on first change\n\t\t\tconst placeholder = dropdown.select('option[value=\"-\"]')\n\t\t\tplaceholder.remove()\n\t\t\tpathwayOpts.shift()\n\t\t}\n\n\t\tconst idx = event.target.selectedIndex\n\t\tsettings.pathway = pathwayOpts[idx].value\n\t\tself.app.dispatch({\n\t\t\ttype: 'plot_edit',\n\t\t\tid: self.id,\n\t\t\tconfig: {\n\t\t\t\t//Need to clear the gsea_params completely\n\t\t\t\tgsea_params: {\n\t\t\t\t\tgeneset_name: null,\n\t\t\t\t\tpathway: pathwayOpts[idx].value\n\t\t\t\t},\n\t\t\t\thighlightGenes: [],\n\t\t\t\tsettings: {\n\t\t\t\t\tgsea: settings\n\t\t\t\t}\n\t\t\t}\n\t\t})\n\t})\n\tfor (const opt of pathwayOpts) {\n\t\tdropdown\n\t\t\t.append('option')\n\t\t\t.text(opt.label)\n\t\t\t.attr('value', opt.value)\n\t\t\t.attr('selected', opt.selected ? true : null)\n\t}\n}\n\nasync function render_gsea(self) {\n\t/*\nm {}\n- gene\n- logfoldchange\n- averagevalue\n- pvalue\n\nadd:\n- vo_circle\n\t*/\n\n\t//Render the dropdown if launched from state\n\t//Otherwise will persist on load\n\tself.dom.actionsDiv.selectAll('*').remove()\n\trenderPathwayDropdown(self)\n\tif (self.settings.pathway == '-' || self.settings.pathway == undefined) return\n\tself.dom.detailsDiv.selectAll('*').remove()\n\tself.dom.holder.selectAll('*').remove()\n\tself.dom.tableDiv.selectAll('*').remove()\n\tself.config.gsea_params.geneSetGroup = self.settings.pathway\n\tself.config.gsea_params.filter_non_coding_genes = self.settings.filter_non_coding_genes\n\tself.config.gsea_params.num_permutations = self.settings.num_permutations\n\n\tlet output\n\ttry {\n\t\tconst p = self.config.gsea_params\n\t\tconst body = {\n\t\t\tgenome: p.genome,\n\t\t\tgeneSetGroup: self.settings.pathway,\n\t\t\tfilter_non_coding_genes: self.settings.filter_non_coding_genes,\n\t\t\tmethod: self.settings.gsea_method\n\t\t}\n\t\tif (p.cacheId) {\n\t\t\tbody.cacheId = p.cacheId\n\t\t\t// Sending the DE request snapshot lets the server regenerate the\n\t\t\t// cache on miss (farm node without the file, TTL-expired).\n\t\t\tif (p.daRequest) body.daRequest = p.daRequest\n\t\t\t// Top-level dslabel makes the global auth middleware populate\n\t\t\t// clientAuthResult so the server can re-apply the same\n\t\t\t// auth-filter injection to daRequest before hashing.\n\t\t\tif (p.dslabel) body.dslabel = p.dslabel\n\t\t} else if (p.dapParams) {\n\t\t\tbody.dapParams = p.dapParams\n\t\t\tbody.dslabel = p.dslabel\n\t\t} else {\n\t\t\tbody.genes = p.genes\n\t\t\tbody.fold_change = p.fold_change\n\t\t}\n\n\t\tif (self.settings.gsea_method == 'blitzgsea') {\n\t\t\tbody.num_permutations = self.settings.num_permutations\n\t\t}\n\t\toutput = await rungsea(body, self.dom)\n\t\tif (output.error) {\n\t\t\tthrow Object.assign(new Error(output.error), { code: output.code })\n\t\t}\n\t} catch (e) {\n\t\t// Inline error block instead of alert(). Mirror the detail-plot\n\t\t// branch below so the GSEA pane shows the failure in-context (e.g.\n\t\t// blitzgsea calibration failures on small/degenerate signatures\n\t\t// from gsea.py's _safe_blitz_gsea, or daCacheMissing on a\n\t\t// stale-session cache regen).\n\t\tself.dom.holder.selectAll('*').remove()\n\t\tconst msg = String(e?.message || e)\n\t\tif (e?.code === 'CACHE_BUSY') {\n\t\t\tif (window.confirm(msg)) render_gsea(self)\n\t\t\treturn\n\t\t}\n\t\tconst userMsg = /daCacheMissing|ENOENT|no such file/i.test(msg)\n\t\t\t? 'The differential-analysis cache for this GSEA is no longer available. Reopen the volcano plot to regenerate it.'\n\t\t\t: msg\n\t\tsayerror(self.dom.holder, userMsg)\n\t\treturn\n\t}\n\n\t//Ensure the image renders when toggling between tabs\n\tif (self.config.gsea_params.geneset_name != null) {\n\t\ttry {\n\t\t\tif (self.settings.gsea_method == 'blitzgsea') {\n\t\t\t\tself.config.gsea_params.method = self.settings.gsea_method\n\t\t\t\tconst image = await rungsea(self.config.gsea_params, self.dom)\n\t\t\t\t// //render_gsea_plot(self, plot_data)\n\t\t\t\tif (image.error) throw image.error\n\t\t\t\tself.imageUrl = URL.createObjectURL(image)\n\t\t\t\tconst png_width = 600\n\t\t\t\tconst png_height = 400\n\t\t\t\tself.dom.holder.append('img').attr('width', png_width).attr('height', png_height).attr('src', self.imageUrl)\n\t\t\t} else if (self.settings.gsea_method == 'cerno') {\n\t\t\t\tif (!self.rankedDE && (self.config.gsea_params.cacheId || self.config.gsea_params.dapParams)) {\n\t\t\t\t\tconst fetchBody = {\n\t\t\t\t\t\tgenome: self.config.gsea_params.genome,\n\t\t\t\t\t\tdslabel: self.config.gsea_params.dslabel,\n\t\t\t\t\t\tfetchDE: true,\n\t\t\t\t\t\tgeneSetGroup: '-',\n\t\t\t\t\t\tfilter_non_coding_genes: false,\n\t\t\t\t\t\tmethod: 'cerno'\n\t\t\t\t\t}\n\t\t\t\t\tif (self.config.gsea_params.cacheId) {\n\t\t\t\t\t\tfetchBody.cacheId = self.config.gsea_params.cacheId\n\t\t\t\t\t\tfetchBody.daRequest = self.config.gsea_params.daRequest\n\t\t\t\t\t} else if (self.config.gsea_params.dapParams) {\n\t\t\t\t\t\tfetchBody.dapParams = self.config.gsea_params.dapParams\n\t\t\t\t\t}\n\t\t\t\t\tconst deResp = await dofetch3('genesetEnrichment', {\n\t\t\t\t\t\tbody: fetchBody\n\t\t\t\t\t})\n\t\t\t\t\tif (deResp.error) throw Object.assign(new Error(deResp.error), { code: deResp.code })\n\t\t\t\t\tself.rankedDE = deResp.data\n\t\t\t\t}\n\t\t\t\trender_cerno_plot(self, output)\n\t\t\t} else {\n\t\t\t\tthrow 'Unknown method:' + self.settings.gsea_method\n\t\t\t}\n\t\t} catch (e) {\n\t\t\tself.dom.holder.selectAll('*').remove()\n\t\t\tconst msg = String(e?.message || e)\n\t\t\tif (e?.code === 'CACHE_BUSY') {\n\t\t\t\tif (window.confirm(msg)) render_gsea(self)\n\t\t\t\treturn\n\t\t\t}\n\t\t\tconst userMsg = /daCacheMissing|ENOENT|no such file/i.test(msg)\n\t\t\t\t? 'The differential-analysis cache for this GSEA is no longer available. Reopen the volcano plot to regenerate it.'\n\t\t\t\t: msg\n\t\t\tsayerror(self.dom.holder, userMsg)\n\t\t\treturn\n\t\t}\n\t}\n\n\tconst table_stats = table2col({ holder: self.dom.detailsDiv.attr('data-testid', 'sjpp-gsea-stats') })\n\tconst [t1, t2] = table_stats.addRow()\n\tt2.style('text-align', 'center').style('font-size', '0.8em').style('opacity', '0.8').text('COUNT')\n\tlet addStats\n\tif (self.settings.gsea_method == 'blitzgsea') {\n\t\taddStats = [\n\t\t\t{\n\t\t\t\tlabel: 'Gene sets analyzed',\n\t\t\t\tvalues: Object.keys(output.data).length\n\t\t\t}\n\t\t]\n\t} else if (self.settings.gsea_method == 'cerno') {\n\t\taddStats = [\n\t\t\t{\n\t\t\t\tlabel: 'Gene sets analyzed',\n\t\t\t\tvalues: Object.keys(output).length\n\t\t\t}\n\t\t]\n\t} else {\n\t\tthrow 'Unknown method:' + self.settings.gsea_method\n\t}\n\n\tfor (const dataRow of addStats) {\n\t\tconst [td1, td2] = table_stats.addRow()\n\t\ttd1.text(dataRow.label)\n\t\ttd2.style('text-align', 'end').text(dataRow.values)\n\t}\n\n\t// Generating the table\n\tself.gsea_table_rows = []\n\tlet output_keys\n\tif (self.settings.gsea_method == 'blitzgsea') {\n\t\toutput_keys = Object.entries(output.data).map(([key, value]) => {\n\t\t\treturn { key, value } // Convert to an array of objects\n\t\t})\n\t} else if (self.settings.gsea_method == 'cerno') {\n\t\toutput_keys = Object.entries(output).map(([key, value]) => {\n\t\t\treturn { key, value } // Convert to an array of objects\n\t\t})\n\t} else {\n\t\tthrow 'Unknown method:' + self.settings.gsea_method\n\t}\n\n\tif (self.settings.fdr_or_top == 'top') {\n\t\t// Sorting the top (top_genesets) genesets in decreasing order\n\t\toutput_keys.sort((i, j) => Number(i.value.fdr) - Number(j.value.fdr))\n\t\tconst top_genesets = Math.min(self.settings.top_genesets, output_keys.length) // If the length of the table is less than the top cutoff, only iterate till the end of the table\n\t\tfor (let iter = 0; iter < top_genesets; iter++) {\n\t\t\tif (\n\t\t\t\tself.settings.max_gene_set_size_cutoff >= output_keys[iter].value.geneset_size &&\n\t\t\t\tself.settings.min_gene_set_size_cutoff <= output_keys[iter].value.geneset_size\n\t\t\t) {\n\t\t\t\tsetResultsRows(output_keys, iter, self)\n\t\t\t}\n\t\t}\n\t} else if (self.settings.fdr_or_top == 'fdr') {\n\t\tfor (let iter = 0; iter < output_keys.length; iter++) {\n\t\t\tif (\n\t\t\t\tself.settings.fdr_cutoff >= output_keys[iter].value.fdr &&\n\t\t\t\tself.settings.max_gene_set_size_cutoff >= output_keys[iter].value.geneset_size &&\n\t\t\t\tself.settings.min_gene_set_size_cutoff <= output_keys[iter].value.geneset_size\n\t\t\t) {\n\t\t\t\tsetResultsRows(output_keys, iter, self)\n\t\t\t}\n\t\t}\n\t}\n\n\tself.dom.tableDiv.selectAll('*').remove()\n\tconst d_gsea = self.dom.tableDiv.append('div')\n\t// table columns showing analysis results for each gene set\n\tself.gsea_table_cols = []\n\tif (self.settings.gsea_method == 'blitzgsea') {\n\t\tself.gsea_table_cols = [\n\t\t\t{ label: 'Gene Set', sortable: true },\n\t\t\t//{ label: 'Enrichment Score' },\n\t\t\t{ label: 'Normalized Enrichment Score', barplot: { axisWidth: 200 }, sortable: true },\n\t\t\t{ label: 'Gene Set Size', sortable: true },\n\t\t\t{ label: 'P value', sortable: true },\n\t\t\t//{ label: 'Sidak' },\n\t\t\t{ label: 'FDR', sortable: true },\n\t\t\t{ label: 'Leading Edge' }\n\t\t]\n\t} else if (self.settings.gsea_method == 'cerno') {\n\t\tself.gsea_table_cols = [\n\t\t\t{ label: 'Gene Set', sortable: true },\n\t\t\t{ label: 'Area Under Curve', barplot: { axisWidth: 200 }, sortable: true },\n\t\t\t{ label: 'Enrichment Score', barplot: { axisWidth: 200 }, sortable: true },\n\t\t\t{ label: 'Total Gene Set Size', sortable: true },\n\t\t\t{ label: 'P value', sortable: true },\n\t\t\t{ label: 'FDR', sortable: true },\n\t\t\t{ label: 'Gene Set Hits' }\n\t\t]\n\t} else {\n\t\tthrow 'Unknown method:' + self.settings.gsea_method\n\t}\n\tlet download = {}\n\n\tif (self.config.chartType == 'differentialAnalysis') {\n\t\t//Highlight genes button\n\t\tself.dom.detailsDiv\n\t\t\t.append('button')\n\t\t\t.style('margin-left', '10px')\n\t\t\t.style(\n\t\t\t\t'display',\n\t\t\t\tself.config.chartType == 'differentialAnalysis' && self.config.gsea_params.geneset_name == null\n\t\t\t\t\t? 'none'\n\t\t\t\t\t: 'block'\n\t\t\t)\n\t\t\t.attr('aria-label', 'Highlight genes in the volcano plot')\n\t\t\t.text('Highlight genes')\n\t\t\t.on('click', () => {\n\t\t\t\tself.app.dispatch({\n\t\t\t\t\ttype: 'plot_edit',\n\t\t\t\t\tid: self.id,\n\t\t\t\t\tconfig: {\n\t\t\t\t\t\tchildType: 'volcano',\n\t\t\t\t\t\thighlightedData: self.config.highlightGenes\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t})\n\t}\n\n\tif (self.state.config.downloadFilename) download.fileName = self.state.config.downloadFilename\n\n\t//Table rerenders when main is called\n\t//Fix to show which gene set is selected after rerender\n\tconst geneSetIdx = self.gsea_table_rows.findIndex(row => row[0].value == self.config.gsea_params.geneset_name)\n\tconst selectedRows = geneSetIdx > -1 ? [geneSetIdx] : []\n\n\trenderTable({\n\t\tdownload,\n\t\tcolumns: self.gsea_table_cols,\n\t\trows: self.gsea_table_rows,\n\t\tdiv: d_gsea,\n\t\tshowLines: true,\n\t\tmaxHeight: '30vh',\n\t\tsingleMode: true,\n\t\tresize: true,\n\t\theader: { allowSort: true },\n\t\tselectedRows: selectedRows,\n\t\tnoButtonCallback: async index => {\n\t\t\tconst config = {\n\t\t\t\tgsea_params: {\n\t\t\t\t\tgeneset_name: self.gsea_table_rows[index][0].value\n\t\t\t\t}\n\t\t\t}\n\t\t\tif (self.config.chartType == 'differentialAnalysis') {\n\t\t\t\t//Saves the data to highlight in the volcano plot\n\t\t\t\tlet genes\n\t\t\t\tif (self.settings.gsea_method == 'blitzgsea') {\n\t\t\t\t\tgenes = [...self.gsea_table_rows[index][5].value.split(',')]\n\t\t\t\t} else if (self.settings.gsea_method == 'cerno') {\n\t\t\t\t\tgenes = [...self.gsea_table_rows[index][6].value.split(',')]\n\t\t\t\t} else {\n\t\t\t\t\tthrow 'Unknown method:' + self.settings.gsea_method\n\t\t\t\t}\n\t\t\t\tif (genes) config.highlightGenes = genes\n\t\t\t}\n\t\t\tawait self.app.dispatch({\n\t\t\t\ttype: 'plot_edit',\n\t\t\t\tid: self.id,\n\t\t\t\tconfig\n\t\t\t})\n\t\t}\n\t})\n}\n\nfunction setResultsRows(output_keys, iter, self) {\n\tconst pathway_name = output_keys[iter].key\n\tconst pval = output_keys[iter].value.pval\n\t\t? roundValueAuto(output_keys[iter].value.pval)\n\t\t: output_keys[iter].value.pval\n\tconst fdr = output_keys[iter].value.fdr ? roundValueAuto(output_keys[iter].value.fdr) : output_keys[iter].value.fdr\n\tif (self.settings.gsea_method == 'blitzgsea') {\n\t\tconst nes = output_keys[iter].value.nes ? roundValueAuto(output_keys[iter].value.nes) : output_keys[iter].value.nes\n\t\t// const sidak = output_keys[iter].value.sidak\n\t\t// \t? roundValueAuto(output_keys[iter].value.sidak)\n\t\t// \t: output_keys[iter].value.sidak\n\t\tself.gsea_table_rows.push([\n\t\t\t{ value: pathway_name },\n\t\t\t{ value: nes },\n\t\t\t{ value: output_keys[iter].value.geneset_size },\n\t\t\t{ value: pval },\n\t\t\t//{ value: sidak },\n\t\t\t{ value: fdr },\n\t\t\t{ value: output_keys[iter].value.leading_edge }\n\t\t])\n\t} else if (self.settings.gsea_method == 'cerno') {\n\t\tconst auc = output_keys[iter].value.auc ? roundValueAuto(output_keys[iter].value.auc) : output_keys[iter].value.auc\n\t\tconst es = output_keys[iter].value.es ? roundValueAuto(output_keys[iter].value.es) : output_keys[iter].value.es\n\t\tself.gsea_table_rows.push([\n\t\t\t{ value: pathway_name },\n\t\t\t{ value: auc },\n\t\t\t{ value: es },\n\t\t\t{ value: output_keys[iter].value.geneset_size },\n\t\t\t{ value: pval },\n\t\t\t{ value: fdr },\n\t\t\t{ value: output_keys[iter].value.leading_edge }\n\t\t])\n\t} else {\n\t\tthrow 'Unknown method:' + self.settings.gsea_method\n\t}\n}\n\nfunction render_cerno_plot(self, cerno_output) {\n\tconst holder = self.dom.holder\n\tholder.selectAll('*').remove()\n\tconst svg_width = 400\n\tconst svg_height = 400\n\tconst svg = holder.append('svg').attr('width', svg_width).attr('height', svg_height)\n\tconst toppad = 20\n\tconst rightpad = 5\n\tconst yaxisw = 50 //Math.max(50, svg_width / 8)\n\tconst xaxish = 50 //Math.max(50, svg_height / 8)\n\tconst yaxisg = svg.append('g')\n\tconst xaxisg = svg.append('g')\n\tconst xpad = 50\n\tconst ypad = 100\n\n\tconst rankedDE = self.rankedDE || self.config.gsea_params\n\tconst DE_output = []\n\tfor (let i = 0; i < rankedDE.genes.length; i++) {\n\t\tconst item = { gene: rankedDE.genes[i], fold_change: rankedDE.fold_change[i] }\n\t\tDE_output.push(item)\n\t}\n\tDE_output.sort((i, j) => j.fold_change - i.fold_change) // Sorting genes in descending order of fold change\n\n\tconst xscale = scaleLinear()\n\t\t.domain([0, DE_output.length])\n\t\t.range([xpad, svg_width - rightpad])\n\tconst yscale = scaleLinear()\n\t\t.domain([100, 0])\n\t\t.range([toppad, svg_height - ypad])\n\n\tyaxisg.attr('transform', 'translate(' + xpad + ',' + 0 + ')')\n\txaxisg.attr('transform', 'translate(' + 0 + ',' + (svg_height - ypad) + ')')\n\tconst xlab = svg\n\t\t.append('text')\n\t\t.text('Gene list')\n\t\t.attr('fill', 'black')\n\t\t.attr('text-anchor', 'start')\n\t\t.attr('transform', 'translate(' + xscale(DE_output.length / 3) + ',' + (svg_height - ypad + 2 * toppad) + ')')\n\tconst ylab = svg\n\t\t.append('text')\n\t\t.text('Percentage of gene set')\n\t\t.attr('fill', 'black')\n\t\t.attr('text-anchor', 'middle')\n\t\t.attr('y', xpad / 2)\n\t\t.attr('x', -svg_width / 2.5)\n\t\t.attr('transform', 'rotate(-90)')\n\tlet fontSize = 30\n\tconst title = svg\n\t\t.append('text')\n\t\t.text(self.config.gsea_params.geneset_name)\n\t\t.attr('fill', 'black')\n\t\t.attr('text-anchor', 'start')\n\t\t.attr('font-size', fontSize + 'px')\n\t\t.attr('transform', 'translate(' + xpad + ',' + toppad / 2 + ')')\n\n\t// Check to see if the text fits into the svg width and toppad dimensions. If not, decrease the font size until the text fits into these dimensions\n\tlet title_bbox = title.node().getBBox()\n\twhile (title_bbox.width > svg_width - xpad || title_bbox.height > (toppad * 3.5) / 5) {\n\t\tfontSize -= 1 // Decrease font size\n\t\ttitle.node().setAttribute('font-size', fontSize + 'px')\n\t\ttitle_bbox = title.node().getBBox() // Measure again\n\t}\n\n\tconst auc = cerno_output[self.config.gsea_params.geneset_name].auc\n\tif (typeof auc === 'number') {\n\t\tlet auc_pos\n\t\tif (auc >= 0.5) {\n\t\t\t// The position of the text changes depending upon the value of auc so as to avoid the auc curve overlapping with the text\n\t\t\tauc_pos = xscale((DE_output.length * 3) / 3.5) + ',' + (svg_height - ypad * 1.5)\n\t\t} else {\n\t\t\tauc_pos = xscale((DE_output.length * 0.8) / 4.5) + ',' + (svg_height - ypad * 3)\n\t\t}\n\t\tconst auc_text = svg\n\t\t\t.append('text')\n\t\t\t.text('AUC=' + roundValueAuto(auc))\n\t\t\t.attr('fill', 'black')\n\t\t\t.attr('text-anchor', 'middle')\n\t\t\t.attr('transform', 'translate(' + auc_pos + ')')\n\t} else {\n\t\t// Should not happen\n\t\tthrow 'AUC not a number:' + auc\n\t}\n\n\taxisstyle({\n\t\taxis: yaxisg.call(d3axis.axisLeft().scale(yscale)),\n\t\tcolor: 'black',\n\t\tshowline: true,\n\t\tfontsize: '10'\n\t})\n\taxisstyle({\n\t\taxis: xaxisg.call(d3axis.axisBottom().scale(xscale)),\n\t\tcolor: 'black',\n\t\tshowline: true,\n\t\tfontsize: '10'\n\t})\n\n\t// Find genes that were found from cerno output\n\tif (Object.keys(cerno_output).includes(self.config.gsea_params.geneset_name)) {\n\t\tconst hit_genes = cerno_output[self.config.gsea_params.geneset_name].leading_edge.split(',')\n\t\tconst y_increment = 100 / hit_genes.length\n\t\tconst lines = svg.append('g')\n\n\t\tlet y_iter = 100\n\t\tfor (let i = 0; i < DE_output.length; i++) {\n\t\t\tconst y_old = y_iter\n\t\t\t// Increment y only when gene is found in geneset\n\t\t\tif (hit_genes.includes(DE_output[i].gene)) {\n\t\t\t\ty_iter = y_iter - y_increment\n\t\t\t\tlines\n\t\t\t\t\t.append('line') // attach a line\n\t\t\t\t\t.style('stroke', 'red') // colour the line\n\t\t\t\t\t.attr('x1', xscale(i)) // x position of the first end of the line\n\t\t\t\t\t.attr('y1', svg_height) // y position of the first end of the line\n\t\t\t\t\t.attr('x2', xscale(i)) // x position of the second end of the line\n\t\t\t\t\t.attr('y2', svg_height - ypad + 2.5 * toppad) // y position of the second end of the line\n\t\t\t}\n\t\t\tlines\n\t\t\t\t.append('line') // attach a line\n\t\t\t\t.style('stroke', 'red') // colour the line\n\t\t\t\t.attr('x1', xscale(i)) // x position of the first end of the line\n\t\t\t\t.attr('y1', yscale(100 - y_old)) // y position of the first end of the line\n\t\t\t\t.attr('x2', xscale(i + 1)) // x position of the second end of the line\n\t\t\t\t.attr('y2', yscale(100 - y_iter)) // y position of the second end of the line\n\t\t}\n\t} else {\n\t\t// Should not happen\n\t\tthrow '${self.config.gsea_params.geneset_name} not found'\n\t}\n\n\t//console.log('cerno_output:', cerno_output)\n\n\t// Find the genes that were found in the clicked geneset\n\t//const genes_found\n}\n\n// function render_gsea_plot(self, plot_data) {\n// \t// This function is for client side rendering of the gsea plot. This is not currently used. May be used later if client side rendering is later desired.\n// \tconsole.log('self.dom.holder:', self.dom.holder)\n// \tconst holder = self.dom.holder\n// \tconsole.log('plot_data:', plot_data)\n// \tholder.selectAll('*').remove()\n// \tconst running_sum = plot_data.running_sum.split(',').map(x => parseFloat(x))\n// \tconst es = parseFloat(plot_data.es)\n// \tconsole.log('running_sum:', running_sum)\n// \tconst svg_width = 400\n// \tconst svg_height = 400\n// \tconst svg = holder.append('svg').attr('width', svg_width).attr('height', svg_height)\n// \tconst toppad = 50\n// \tconst rightpad = 50\n// \tconst yaxisw = Math.max(50, svg_width / 8)\n// \tconst xaxish = Math.max(50, svg_height / 8)\n// \tconst yaxisg = svg.append('g')\n// \tconst xaxisg = svg.append('g')\n// \tconst xpad = svg_width / 50\n// \tconst ypad = svg_height / 50\n// \tyaxisg.attr('transform', 'translate(' + (yaxisw + xpad) + ',' + (toppad - ypad) + ')')\n// \txaxisg.attr('transform', 'translate(' + (yaxisw + xpad) + ',' + (svg_height - ypad) + ')')\n// \tconst xlab = xaxisg.append('text').text('Rank').attr('fill', 'black').attr('text-anchor', 'middle') //.attr('transform', 'translate(' + 200 + ',' + 200 + ')')\n// \tconst ylab = yaxisg\n// \t\t.append('text')\n// \t\t.text('ES')\n// \t\t.attr('fill', 'black')\n// \t\t.attr('text-anchor', 'middle')\n// \t\t.attr('transform', 'rotate(-90)')\n// \tconst xscale = scaleLinear().domain(running_sum).range([0, svg_width])\n// \tconst yscale = scaleLinear().domain([0, 100]).range([0, svg_height])\n// \t//const xscale = scaleLinear().domain([Math.min(running_sum), Math.max(running_sum)]).range([0, 100])\n// \taxisstyle({\n// \t\taxis: yaxisg.call(d3axis.axisLeft().scale(yscale)),\n// \t\tcolor: 'black',\n// \t\tshowline: true,\n// \t\tfontsize: '10'\n// \t})\n// \taxisstyle({\n// \t\taxis: xaxisg.call(d3axis.axisBottom().scale(xscale)),\n// \t\tcolor: 'black',\n// \t\tshowline: true,\n// \t\tfontsize: '10'\n// \t})\n// \t//xscale.range([0, svg_width])\n// \t//yscale.range([svg_height, 0])\n// \tconst lines = svg.append('g')\n// \t//svg.selectAll(\".axis text\").style(\"font-size\", \"100px\")\n// \tlet gene_number = 0\n// \tlet y1 = 0\n// \tfor (const rs of running_sum) {\n// \t\tlines\n// \t\t\t.append('line') // attach a line\n// \t\t\t.style('stroke', 'green') // colour the line\n// \t\t\t.attr('x1', xscale(gene_number)) // x position of the first end of the line\n// \t\t\t.attr('y1', yscale(y1)) // y position of the first end of the line\n// \t\t\t.attr('x2', xscale(gene_number)) // x position of the second end of the line\n// \t\t\t.attr('y2', yscale(Math.abs(rs))) // y position of the second end of the line\n// \t\tgene_number += 1\n// \t\ty1 = Math.abs(rs)\n// \t}\n// }\n\nexport function getDefaultGseaSettings(overrides = {}) {\n\tconst defaults = {\n\t\tfdr_cutoff: 0.05,\n\t\tnum_permutations: 1000,\n\t\ttop_genesets: 40,\n\t\tpathway: undefined,\n\t\tgeneset_name: null,\n\t\tmin_gene_set_size_cutoff: 0,\n\t\tmax_gene_set_size_cutoff: 20000,\n\t\tfilter_non_coding_genes: true,\n\t\tfdr_or_top: 'top',\n\t\tgsea_method: 'blitzgsea'\n\t}\n\tif (JSON.parse(sessionStorage.getItem('optionalFeatures')).gsea_test) {\n\t\t// set default method to CERNO when serverconfig flag gsea_test is defined\n\t\tdefaults.gsea_method = 'cerno'\n\t}\n\treturn Object.assign(defaults, overrides)\n}\n\nexport async function getPlotConfig(opts, app) {\n\t// if (!opts.gsea_params) throw 'No gsea_params provided [gsea getPlotConfig()]'\n\ttry {\n\t\tconst config = {\n\t\t\t//idea for fixing nav button\n\t\t\t//samplelst: { groups: app.opts.state.groups}\n\t\t\tsettings: {\n\t\t\t\tgsea: getDefaultGseaSettings(opts.overrides)\n\t\t\t}\n\t\t}\n\t\treturn copyMerge(config, opts)\n\t} catch (e) {\n\t\tthrow `${e} [gsea getPlotConfig()]`\n\t}\n}\n\nexport const gseaInit = getCompInit(gsea)\n// this alias will allow abstracted dynamic imports\nexport const componentInit = gseaInit\n\nexport function makeChartBtnMenu(holder, chartsInstance) {\n\t/*\n\tholder: the holder in the tooltip\n\tchartsInstance: MassCharts instance\n\t\ttermdbConfig is accessible at chartsInstance.state.termdbConfig{}\n\t\tmass option is accessible at chartsInstance.app.opts{}\n\t*/\n\t// to fill in menu, create options in \"holder\"\n\t// to hide menu, call chartsInstance.dom.tip.hide()\n\t// upon clicking an option, generate plot:\n\tchartsInstance.prepPlot({\n\t\tconfig: {\n\t\t\tchartType: 'gsea'\n\t\t}\n\t})\n}\n\nasync function rungsea(body, dom) {\n\t//Only show the loading div as the gsea is running\n\tdom.actionsDiv.style('display', 'none')\n\tdom.loadingDiv.style('display', 'block')\n\tconst data = await dofetch3('genesetEnrichment', { body })\n\tdom.loadingDiv.style('display', 'none')\n\tdom.actionsDiv.style('display', 'block')\n\treturn data\n}\n"],
+  "mappings": ";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAaA,IAAM,MAAM,IAAI,KAAK;AAErB,IAAM,OAAN,MAAM,cAAa,SAAS;AAAA,EAC3B,OAAO,OAAO;AAAA,EAEd,YAAY,MAAM;AACjB,UAAM,IAAI;AACV,SAAK,OAAO,MAAK;AACjB,SAAK,OAAO;AACZ,SAAK,aAAa;AAAA,MACjB,UAAU,CAAC;AAAA,IACZ;AAEA,UAAM,cACL,OAAO,KAAK,YAAY,WAAW,KAAK,WAAW,KAAK,OAAO,OAAO,KAAK,EAAE,MAAM,WAAW,cAAc;AAC7G,UAAM,OAAO,KAAK,OAAO,OAAO,KAAK,EAAE,MAAM,WAAW,cAAc;AACtE,UAAM,aAAa,KACjB,OAAO,KAAK,EACZ,KAAK,eAAe,mBAAmB,EACvC,MAAM,UAAU,MAAM,EACtB,MAAM,cAAc,MAAM;AAC5B,UAAM,aAAa,KACjB,OAAO,KAAK,EACZ,KAAK,eAAe,mBAAmB,EACvC,MAAM,cAAc,QAAQ,EAC5B,MAAM,WAAW,MAAM,EACvB,MAAM,UAAU,MAAM,EACtB,MAAM,cAAc,MAAM,EAC1B,KAAK,YAAY;AACnB,UAAM,SAAS,KACb,OAAO,KAAK,EACZ,MAAM,eAAe,MAAM,EAC3B,MAAM,WAAW,cAAc,EAC/B,KAAK,eAAe,kBAAkB;AACxC,UAAM,aAAa,KACjB,OAAO,KAAK,EACZ,KAAK,eAAe,mBAAmB,EACvC,MAAM,WAAW,cAAc,EAC/B,MAAM,kBAAkB,KAAK,EAC7B,MAAM,cAAc,MAAM;AAE5B,UAAM,WAAW,KAAK,OAAO,KAAK,EAAE,MAAM,UAAU,MAAM,EAAE,KAAK,eAAe,yBAAyB;AAEzG,SAAK,MAAM;AAAA,MACV;AAAA,MACA,QAAQ,KAAK;AAAA,MACb;AAAA,MACA;AAAA,MACA;AAAA,MACA;AAAA,MACA;AAAA,IACD;AAAA,EACD;AAAA,EAEA,MAAM,cAAc;AACnB,SAAK,IAAI,YAAY,UAAU,GAAG,EAAE,OAAO;AAC3C,UAAM,SAAS;AAAA,MACd;AAAA,QACC,OAAO;AAAA,QACP,MAAM;AAAA,QACN,WAAW;AAAA,QACX,aAAa;AAAA,QACb,OAAO;AAAA,QACP,KAAK;AAAA,MACN;AAAA,MACA;AAAA,QACC,OAAO;AAAA,QACP,MAAM;AAAA,QACN,WAAW;AAAA,QACX,aAAa;AAAA,QACb,OAAO;AAAA,QACP,KAAK;AAAA,MACN;AAAA,MACA;AAAA,QACC,OAAO;AAAA,QACP,MAAM;AAAA,QACN,WAAW;AAAA,QACX,aAAa;AAAA,QACb,OAAO;AAAA,QACP,UAAU;AAAA,MACX;AAAA,MACA;AAAA,QACC,OAAO;AAAA,QACP,MAAM;AAAA,QACN,WAAW;AAAA,QACX,aAAa;AAAA,QACb,OAAO;AAAA,QACP,SAAS;AAAA,UACR,EAAE,OAAO,OAAO,OAAO,MAAM;AAAA,UAC7B,EAAE,OAAO,iBAAiB,OAAO,MAAM;AAAA,QACxC;AAAA,MACD;AAAA,IACD;AAEA,QAAI,KAAK,MAAM,eAAe,QAAQ,kBAAkB,CAAC,EAAE,WAAW;AACrE,aAAO,KAAK;AAAA,QACX,OAAO;AAAA,QACP,MAAM;AAAA,QACN,WAAW;AAAA,QACX,aAAa;AAAA,QACb,OAAO;AAAA,QACP,SAAS;AAAA,UACR,EAAE,OAAO,aAAa,OAAO,YAAY;AAAA,UACzC,EAAE,OAAO,SAAS,OAAO,QAAQ;AAAA,QAClC;AAAA,MACD,CAAC;AAAA,IACF;AACA,QAAI,KAAK,SAAS,eAAe,aAAa;AAC7C,aAAO,KAAK;AAAA,QACX,OAAO;AAAA,QACP,MAAM;AAAA,QACN,WAAW;AAAA,QACX,aAAa;AAAA,QACb,OAAO;AAAA,QACP,KAAK;AAAA,QACL,KAAK;AAAA;AAAA,MACN,CAAC;AAAA,IACF;AACA,QAAI,KAAK,SAAS,cAAc,OAAO;AACtC,aAAO,KAAK;AAAA,QACX,OAAO;AAAA,QACP,MAAM;AAAA,QACN,WAAW;AAAA,QACX,aAAa;AAAA,QACb,OAAO;AAAA,QACP,KAAK;AAAA,QACL,KAAK;AAAA,MACN,CAAC;AAAA,IACF,WAAW,KAAK,SAAS,cAAc,OAAO;AAC7C,aAAO,KAAK;AAAA,QACX,OAAO;AAAA,QACP,MAAM;AAAA,QACN,WAAW;AAAA,QACX,aAAa;AAAA,QACb,OAAO;AAAA,QACP,KAAK;AAAA,QACL,KAAK;AAAA,MACN,CAAC;AAAA,IACF,OAAO;AACN,YAAM;AAAA,IACP;AAEA,SAAK,WAAW,WAAW,MAAM,aAAa;AAAA,MAC7C,KAAK,KAAK;AAAA,MACV,IAAI,KAAK;AAAA,MACT,QAAQ,KAAK,IAAI;AAAA,MACjB;AAAA,IACD,CAAC;AAED,SAAK,WAAW,SAAS,GAAG,sBAAsB,MAAM;AACvD,UAAI,CAAC,KAAK,SAAU,QAAO,MAAM,sBAAsB;AACvD,YAAM,UAAU,KAAK;AACrB,YAAM,kBAAkB,GAAG,KAAK,MAAM,OAAO,YAAY,gBAAgB,EAAE;AAC3E,YAAM,IAAI,SAAS,cAAc,GAAG;AACpC,eAAS,KAAK,YAAY,CAAC;AAE3B,QAAE;AAAA,QACD;AAAA,QACA,MAAM;AAEL,YAAE,WAAW,kBAAkB;AAC/B,YAAE,OAAO;AACT,mBAAS,KAAK,YAAY,CAAC;AAAA,QAC5B;AAAA,QACA;AAAA,MACD;AACA,QAAE,MAAM;AAAA,IACT,CAAC;AAAA,EACF;AAAA,EAEA,SAAS,UAAU;AAClB,UAAM,SAAS,SAAS,MAAM,KAAK,OAAK,EAAE,OAAO,KAAK,EAAE;AACxD,QAAI,CAAC,OAAQ,OAAM,oBAAoB,KAAK,EAAE;AAC9C,UAAM,eAAe,SAAS,MAAM,KAAK,OAAK,EAAE,OAAO,KAAK,QAAQ;AACpE,UAAM,aAAa,sBAAsB,UAAU,OAAO,UAAU,cAAc,MAAM;AAExF,WAAO;AAAA,MACN;AAAA,MACA;AAAA,IACD;AAAA,EACD;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,EASA,MAAM,KAAK,UAAU;AACpB,UAAM,SAAS,SAAS,MAAM,KAAK,OAAK,EAAE,OAAO,KAAK,EAAE;AACxD,QAAI,CAAC,OAAO,aAAa;AACxB,UAAI;AACH,YAAI,OAAO,aAAa,cAAc;AACrC,gBAAM,KAAK,IAAI,KAAK;AAAA,YACnB,MAAM;AAAA,YACN,IAAI,KAAK;AAAA,YACT,QAAQ;AAAA,cACP,aAAa;AAAA,gBACZ,WAAW,OAAO;AAAA,gBAClB,QAAQ,KAAK,IAAI,SAAS,KAAK,MAAM,MAAM;AAAA,gBAC3C,SAAS,KAAK,IAAI,SAAS,MAAM;AAAA,cAClC;AAAA,YACD;AAAA,UACD,CAAC;AAAA,QACF,WAAW,OAAO,aAAa,qBAAqB;AAMnD,gBAAM,OAAO;AAAA,YACZ,QAAQ,KAAK,IAAI,SAAS,MAAM;AAAA,YAChC,SAAS,KAAK,IAAI,SAAS,MAAM;AAAA,YACjC,QAAQ,OAAO;AAAA,YACf,QAAQ,OAAO;AAAA,YACf,cAAc,OAAO;AAAA,UACtB;AACA,gBAAM,WAAW,MAAM,SAAS,4BAA4B,EAAE,MAAM,QAAQ,KAAK,KAAK,eAAe,EAAE,CAAC;AACxG,cAAI,SAAS,MAAO,OAAM,SAAS;AACnC,cAAI,CAAC,MAAM,QAAQ,SAAS,IAAI,KAAK,SAAS,KAAK,WAAW,EAAG,OAAM;AACvE,gBAAM,QAAQ,CAAC;AACf,gBAAM,cAAc,CAAC;AACrB,qBAAW,KAAK,SAAS,MAAM;AAC9B,kBAAM,KAAK,EAAE,SAAS;AACtB,wBAAY,KAAK,EAAE,WAAW;AAAA,UAC/B;AACA,gBAAM,KAAK,IAAI,KAAK;AAAA,YACnB,MAAM;AAAA,YACN,IAAI,KAAK;AAAA,YACT,QAAQ;AAAA,cACP,aAAa;AAAA,gBACZ;AAAA,gBACA;AAAA,gBACA,cAAc,MAAM;AAAA,gBACpB,QAAQ,KAAK,IAAI,SAAS,KAAK,MAAM,MAAM;AAAA,cAC5C;AAAA,YACD;AAAA,UACD,CAAC;AAAA,QACF,OAAO;AACN,gBAAM,kBACL,OAAO,UAAU,WAAW,0BAA0B,CAAC,GAAG,EAAE,UAAU,iBAAiB,CAAC;AACzF,gBAAM,QAAQ,IAAI,aAAa,MAAM,OAAO,QAAQ;AACpD,gBAAM,WAAW,MAAM,MAAM,QAAQ,QAAQ,eAAe;AAC5D,cAAI,CAAC,UAAU,MAAM,WAAW,SAAS,OAAO;AAC/C,kBAAM,SAAS,SAAS;AAAA,UACzB;AACA,gBAAM,KAAK,IAAI,KAAK;AAAA,YACnB,MAAM;AAAA,YACN,IAAI,KAAK;AAAA,YACT,QAAQ;AAAA,cACP,aAAa;AAAA,gBACZ,SAAS,SAAS,KAAK;AAAA;AAAA;AAAA;AAAA,gBAIvB,WAAW,SAAS;AAAA,gBACpB,cAAc,SAAS,KAAK;AAAA,gBAC5B,QAAQ,KAAK,IAAI,SAAS,KAAK,MAAM,MAAM;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,gBAM3C,SAAS,KAAK,IAAI,SAAS,MAAM;AAAA,cAClC;AAAA,YACD;AAAA,UACD,CAAC;AAAA,QACF;AAAA,MACD,SAAS,GAAG;AACX,YAAI,aAAa,MAAO,SAAQ,MAAM,EAAE,WAAW,CAAC;AAAA,iBAC3C,EAAE,MAAO,SAAQ,IAAI,EAAE,KAAK;AACrC,cAAM;AAAA,MACP;AAAA,IACD;AAAA,EACD;AAAA,EAEA,SAAS,QAAQ;AAChB,QAAI,OAAO,KAAK,WAAW,OAAO,GAAG;AACpC,cACE,OAAO,OAAO,KAAK,MAAM,OAAO,MAAM,KAAK,cAC3C,CAAC,OAAO,QAAQ,aAAa,OAAO,QAAQ,aAAa,KAAK;AAAA,IAEjE;AAAA,EACD;AAAA,EAEA,MAAM,OAAO;AAGZ,UAAM,SAAS,KAAK,IAAI,SAAS,EAAE,MAAM,KAAK,OAAK,EAAE,OAAO,KAAK,EAAE;AACnE,SAAK,SAAS,gBAAgB,MAAM;AACpC,QAAI,KAAK,OAAO,aAAa,KAAK,QAAQ,KAAK,OAAO,aAAa,KAAK,KAAM;AAC9E,SAAK,WAAW,KAAK,OAAO,SAAS;AAErC,SAAK,WAAW;AAChB,UAAM,KAAK,YAAY;AACvB,QAAI,KAAK,IAAI,QAAQ;AACpB,YAAM,YAAY,KAAK,OAAO,YAAY,gBAAgB,KAAK,OAAO,YAAY,OAAO,UAAU;AACnG,WAAK,IAAI,OAAO;AAAA,QACf,YAAY;AAAA,MACb;AAAA,IACD;AACA,gBAAY,IAAI;AAAA,EACjB;AACD;AAEA,eAAe,sBAAsB,MAAM;AAC1C,QAAM,WAAW,gBAAgB,KAAK,QAAQ;AAC9C,QAAM,cAAc,gBAAgB,KAAK,IAAI,KAAK,OAAO,QAAQ,OAAO,qBAAqB;AAE7F,MAAI,KAAK,MAAM,eAAe,QAAQ,kBAAkB,CAAC,EAAE,aAAa,KAAK,SAAS,eAAe,aAAa;AAKjH,gBAAY;AAAA,MACX,EAAE,OAAO,wBAAwB,OAAO,sBAAsB;AAAA,MAC9D,EAAE,OAAO,oBAAoB,OAAO,kBAAkB;AAAA,MACtD,EAAE,OAAO,4BAA4B,OAAO,0BAA0B;AAAA,IACvE;AAAA,EACD;AAEA,MAAI,SAAS,SAAS;AACrB,gBAAY,MAAM;AAClB,gBAAY,KAAK,SAAO,IAAI,SAAS,SAAS,OAAO,EAAE,WAAW;AAAA,EACnE;AAEA,OAAK,IAAI,WACP,OAAO,MAAM,EACb,KAAK,eAAe,mBAAmB,EACvC,MAAM,gBAAgB,MAAM,EAC5B,KAAK,0BAA0B;AAEjC,QAAM,WAAW,KAAK,IAAI,WAAW,OAAO,QAAQ,EAAE,GAAG,UAAU,WAAS;AAC3E,QAAI,CAAC,SAAS,SAAS;AAEtB,YAAM,cAAc,SAAS,OAAO,mBAAmB;AACvD,kBAAY,OAAO;AACnB,kBAAY,MAAM;AAAA,IACnB;AAEA,UAAM,MAAM,MAAM,OAAO;AACzB,aAAS,UAAU,YAAY,GAAG,EAAE;AACpC,SAAK,IAAI,SAAS;AAAA,MACjB,MAAM;AAAA,MACN,IAAI,KAAK;AAAA,MACT,QAAQ;AAAA;AAAA,QAEP,aAAa;AAAA,UACZ,cAAc;AAAA,UACd,SAAS,YAAY,GAAG,EAAE;AAAA,QAC3B;AAAA,QACA,gBAAgB,CAAC;AAAA,QACjB,UAAU;AAAA,UACT,MAAM;AAAA,QACP;AAAA,MACD;AAAA,IACD,CAAC;AAAA,EACF,CAAC;AACD,aAAW,OAAO,aAAa;AAC9B,aACE,OAAO,QAAQ,EACf,KAAK,IAAI,KAAK,EACd,KAAK,SAAS,IAAI,KAAK,EACvB,KAAK,YAAY,IAAI,WAAW,OAAO,IAAI;AAAA,EAC9C;AACD;AAEA,eAAe,YAAY,MAAM;AAchC,OAAK,IAAI,WAAW,UAAU,GAAG,EAAE,OAAO;AAC1C,wBAAsB,IAAI;AAC1B,MAAI,KAAK,SAAS,WAAW,OAAO,KAAK,SAAS,WAAW,OAAW;AACxE,OAAK,IAAI,WAAW,UAAU,GAAG,EAAE,OAAO;AAC1C,OAAK,IAAI,OAAO,UAAU,GAAG,EAAE,OAAO;AACtC,OAAK,IAAI,SAAS,UAAU,GAAG,EAAE,OAAO;AACxC,OAAK,OAAO,YAAY,eAAe,KAAK,SAAS;AACrD,OAAK,OAAO,YAAY,0BAA0B,KAAK,SAAS;AAChE,OAAK,OAAO,YAAY,mBAAmB,KAAK,SAAS;AAEzD,MAAI;AACJ,MAAI;AACH,UAAM,IAAI,KAAK,OAAO;AACtB,UAAM,OAAO;AAAA,MACZ,QAAQ,EAAE;AAAA,MACV,cAAc,KAAK,SAAS;AAAA,MAC5B,yBAAyB,KAAK,SAAS;AAAA,MACvC,QAAQ,KAAK,SAAS;AAAA,IACvB;AACA,QAAI,EAAE,SAAS;AACd,WAAK,UAAU,EAAE;AAGjB,UAAI,EAAE,UAAW,MAAK,YAAY,EAAE;AAIpC,UAAI,EAAE,QAAS,MAAK,UAAU,EAAE;AAAA,IACjC,WAAW,EAAE,WAAW;AACvB,WAAK,YAAY,EAAE;AACnB,WAAK,UAAU,EAAE;AAAA,IAClB,OAAO;AACN,WAAK,QAAQ,EAAE;AACf,WAAK,cAAc,EAAE;AAAA,IACtB;AAEA,QAAI,KAAK,SAAS,eAAe,aAAa;AAC7C,WAAK,mBAAmB,KAAK,SAAS;AAAA,IACvC;AACA,aAAS,MAAM,QAAQ,MAAM,KAAK,GAAG;AACrC,QAAI,OAAO,OAAO;AACjB,YAAM,OAAO,OAAO,IAAI,MAAM,OAAO,KAAK,GAAG,EAAE,MAAM,OAAO,KAAK,CAAC;AAAA,IACnE;AAAA,EACD,SAAS,GAAG;AAMX,SAAK,IAAI,OAAO,UAAU,GAAG,EAAE,OAAO;AACtC,UAAM,MAAM,OAAO,GAAG,WAAW,CAAC;AAClC,QAAI,GAAG,SAAS,cAAc;AAC7B,UAAI,OAAO,QAAQ,GAAG,EAAG,aAAY,IAAI;AACzC;AAAA,IACD;AACA,UAAM,UAAU,sCAAsC,KAAK,GAAG,IAC3D,oHACA;AACH,aAAS,KAAK,IAAI,QAAQ,OAAO;AACjC;AAAA,EACD;AAGA,MAAI,KAAK,OAAO,YAAY,gBAAgB,MAAM;AACjD,QAAI;AACH,UAAI,KAAK,SAAS,eAAe,aAAa;AAC7C,aAAK,OAAO,YAAY,SAAS,KAAK,SAAS;AAC/C,cAAM,QAAQ,MAAM,QAAQ,KAAK,OAAO,aAAa,KAAK,GAAG;AAE7D,YAAI,MAAM,MAAO,OAAM,MAAM;AAC7B,aAAK,WAAW,IAAI,gBAAgB,KAAK;AACzC,cAAM,YAAY;AAClB,cAAM,aAAa;AACnB,aAAK,IAAI,OAAO,OAAO,KAAK,EAAE,KAAK,SAAS,SAAS,EAAE,KAAK,UAAU,UAAU,EAAE,KAAK,OAAO,KAAK,QAAQ;AAAA,MAC5G,WAAW,KAAK,SAAS,eAAe,SAAS;AAChD,YAAI,CAAC,KAAK,aAAa,KAAK,OAAO,YAAY,WAAW,KAAK,OAAO,YAAY,YAAY;AAC7F,gBAAM,YAAY;AAAA,YACjB,QAAQ,KAAK,OAAO,YAAY;AAAA,YAChC,SAAS,KAAK,OAAO,YAAY;AAAA,YACjC,SAAS;AAAA,YACT,cAAc;AAAA,YACd,yBAAyB;AAAA,YACzB,QAAQ;AAAA,UACT;AACA,cAAI,KAAK,OAAO,YAAY,SAAS;AACpC,sBAAU,UAAU,KAAK,OAAO,YAAY;AAC5C,sBAAU,YAAY,KAAK,OAAO,YAAY;AAAA,UAC/C,WAAW,KAAK,OAAO,YAAY,WAAW;AAC7C,sBAAU,YAAY,KAAK,OAAO,YAAY;AAAA,UAC/C;AACA,gBAAM,SAAS,MAAM,SAAS,qBAAqB;AAAA,YAClD,MAAM;AAAA,UACP,CAAC;AACD,cAAI,OAAO,MAAO,OAAM,OAAO,OAAO,IAAI,MAAM,OAAO,KAAK,GAAG,EAAE,MAAM,OAAO,KAAK,CAAC;AACpF,eAAK,WAAW,OAAO;AAAA,QACxB;AACA,0BAAkB,MAAM,MAAM;AAAA,MAC/B,OAAO;AACN,cAAM,oBAAoB,KAAK,SAAS;AAAA,MACzC;AAAA,IACD,SAAS,GAAG;AACX,WAAK,IAAI,OAAO,UAAU,GAAG,EAAE,OAAO;AACtC,YAAM,MAAM,OAAO,GAAG,WAAW,CAAC;AAClC,UAAI,GAAG,SAAS,cAAc;AAC7B,YAAI,OAAO,QAAQ,GAAG,EAAG,aAAY,IAAI;AACzC;AAAA,MACD;AACA,YAAM,UAAU,sCAAsC,KAAK,GAAG,IAC3D,oHACA;AACH,eAAS,KAAK,IAAI,QAAQ,OAAO;AACjC;AAAA,IACD;AAAA,EACD;AAEA,QAAM,cAAc,UAAU,EAAE,QAAQ,KAAK,IAAI,WAAW,KAAK,eAAe,iBAAiB,EAAE,CAAC;AACpG,QAAM,CAAC,IAAI,EAAE,IAAI,YAAY,OAAO;AACpC,KAAG,MAAM,cAAc,QAAQ,EAAE,MAAM,aAAa,OAAO,EAAE,MAAM,WAAW,KAAK,EAAE,KAAK,OAAO;AACjG,MAAI;AACJ,MAAI,KAAK,SAAS,eAAe,aAAa;AAC7C,eAAW;AAAA,MACV;AAAA,QACC,OAAO;AAAA,QACP,QAAQ,OAAO,KAAK,OAAO,IAAI,EAAE;AAAA,MAClC;AAAA,IACD;AAAA,EACD,WAAW,KAAK,SAAS,eAAe,SAAS;AAChD,eAAW;AAAA,MACV;AAAA,QACC,OAAO;AAAA,QACP,QAAQ,OAAO,KAAK,MAAM,EAAE;AAAA,MAC7B;AAAA,IACD;AAAA,EACD,OAAO;AACN,UAAM,oBAAoB,KAAK,SAAS;AAAA,EACzC;AAEA,aAAW,WAAW,UAAU;AAC/B,UAAM,CAAC,KAAK,GAAG,IAAI,YAAY,OAAO;AACtC,QAAI,KAAK,QAAQ,KAAK;AACtB,QAAI,MAAM,cAAc,KAAK,EAAE,KAAK,QAAQ,MAAM;AAAA,EACnD;AAGA,OAAK,kBAAkB,CAAC;AACxB,MAAI;AACJ,MAAI,KAAK,SAAS,eAAe,aAAa;AAC7C,kBAAc,OAAO,QAAQ,OAAO,IAAI,EAAE,IAAI,CAAC,CAAC,KAAK,KAAK,MAAM;AAC/D,aAAO,EAAE,KAAK,MAAM;AAAA,IACrB,CAAC;AAAA,EACF,WAAW,KAAK,SAAS,eAAe,SAAS;AAChD,kBAAc,OAAO,QAAQ,MAAM,EAAE,IAAI,CAAC,CAAC,KAAK,KAAK,MAAM;AAC1D,aAAO,EAAE,KAAK,MAAM;AAAA,IACrB,CAAC;AAAA,EACF,OAAO;AACN,UAAM,oBAAoB,KAAK,SAAS;AAAA,EACzC;AAEA,MAAI,KAAK,SAAS,cAAc,OAAO;AAEtC,gBAAY,KAAK,CAAC,GAAG,MAAM,OAAO,EAAE,MAAM,GAAG,IAAI,OAAO,EAAE,MAAM,GAAG,CAAC;AACpE,UAAM,eAAe,KAAK,IAAI,KAAK,SAAS,cAAc,YAAY,MAAM;AAC5E,aAAS,OAAO,GAAG,OAAO,cAAc,QAAQ;AAC/C,UACC,KAAK,SAAS,4BAA4B,YAAY,IAAI,EAAE,MAAM,gBAClE,KAAK,SAAS,4BAA4B,YAAY,IAAI,EAAE,MAAM,cACjE;AACD,uBAAe,aAAa,MAAM,IAAI;AAAA,MACvC;AAAA,IACD;AAAA,EACD,WAAW,KAAK,SAAS,cAAc,OAAO;AAC7C,aAAS,OAAO,GAAG,OAAO,YAAY,QAAQ,QAAQ;AACrD,UACC,KAAK,SAAS,cAAc,YAAY,IAAI,EAAE,MAAM,OACpD,KAAK,SAAS,4BAA4B,YAAY,IAAI,EAAE,MAAM,gBAClE,KAAK,SAAS,4BAA4B,YAAY,IAAI,EAAE,MAAM,cACjE;AACD,uBAAe,aAAa,MAAM,IAAI;AAAA,MACvC;AAAA,IACD;AAAA,EACD;AAEA,OAAK,IAAI,SAAS,UAAU,GAAG,EAAE,OAAO;AACxC,QAAM,SAAS,KAAK,IAAI,SAAS,OAAO,KAAK;AAE7C,OAAK,kBAAkB,CAAC;AACxB,MAAI,KAAK,SAAS,eAAe,aAAa;AAC7C,SAAK,kBAAkB;AAAA,MACtB,EAAE,OAAO,YAAY,UAAU,KAAK;AAAA;AAAA,MAEpC,EAAE,OAAO,+BAA+B,SAAS,EAAE,WAAW,IAAI,GAAG,UAAU,KAAK;AAAA,MACpF,EAAE,OAAO,iBAAiB,UAAU,KAAK;AAAA,MACzC,EAAE,OAAO,WAAW,UAAU,KAAK;AAAA;AAAA,MAEnC,EAAE,OAAO,OAAO,UAAU,KAAK;AAAA,MAC/B,EAAE,OAAO,eAAe;AAAA,IACzB;AAAA,EACD,WAAW,KAAK,SAAS,eAAe,SAAS;AAChD,SAAK,kBAAkB;AAAA,MACtB,EAAE,OAAO,YAAY,UAAU,KAAK;AAAA,MACpC,EAAE,OAAO,oBAAoB,SAAS,EAAE,WAAW,IAAI,GAAG,UAAU,KAAK;AAAA,MACzE,EAAE,OAAO,oBAAoB,SAAS,EAAE,WAAW,IAAI,GAAG,UAAU,KAAK;AAAA,MACzE,EAAE,OAAO,uBAAuB,UAAU,KAAK;AAAA,MAC/C,EAAE,OAAO,WAAW,UAAU,KAAK;AAAA,MACnC,EAAE,OAAO,OAAO,UAAU,KAAK;AAAA,MAC/B,EAAE,OAAO,gBAAgB;AAAA,IAC1B;AAAA,EACD,OAAO;AACN,UAAM,oBAAoB,KAAK,SAAS;AAAA,EACzC;AACA,MAAI,WAAW,CAAC;AAEhB,MAAI,KAAK,OAAO,aAAa,wBAAwB;AAEpD,SAAK,IAAI,WACP,OAAO,QAAQ,EACf,MAAM,eAAe,MAAM,EAC3B;AAAA,MACA;AAAA,MACA,KAAK,OAAO,aAAa,0BAA0B,KAAK,OAAO,YAAY,gBAAgB,OACxF,SACA;AAAA,IACJ,EACC,KAAK,cAAc,qCAAqC,EACxD,KAAK,iBAAiB,EACtB,GAAG,SAAS,MAAM;AAClB,WAAK,IAAI,SAAS;AAAA,QACjB,MAAM;AAAA,QACN,IAAI,KAAK;AAAA,QACT,QAAQ;AAAA,UACP,WAAW;AAAA,UACX,iBAAiB,KAAK,OAAO;AAAA,QAC9B;AAAA,MACD,CAAC;AAAA,IACF,CAAC;AAAA,EACH;AAEA,MAAI,KAAK,MAAM,OAAO,iBAAkB,UAAS,WAAW,KAAK,MAAM,OAAO;AAI9E,QAAM,aAAa,KAAK,gBAAgB,UAAU,SAAO,IAAI,CAAC,EAAE,SAAS,KAAK,OAAO,YAAY,YAAY;AAC7G,QAAM,eAAe,aAAa,KAAK,CAAC,UAAU,IAAI,CAAC;AAEvD,cAAY;AAAA,IACX;AAAA,IACA,SAAS,KAAK;AAAA,IACd,MAAM,KAAK;AAAA,IACX,KAAK;AAAA,IACL,WAAW;AAAA,IACX,WAAW;AAAA,IACX,YAAY;AAAA,IACZ,QAAQ;AAAA,IACR,QAAQ,EAAE,WAAW,KAAK;AAAA,IAC1B;AAAA,IACA,kBAAkB,OAAM,UAAS;AAChC,YAAM,SAAS;AAAA,QACd,aAAa;AAAA,UACZ,cAAc,KAAK,gBAAgB,KAAK,EAAE,CAAC,EAAE;AAAA,QAC9C;AAAA,MACD;AACA,UAAI,KAAK,OAAO,aAAa,wBAAwB;AAEpD,YAAI;AACJ,YAAI,KAAK,SAAS,eAAe,aAAa;AAC7C,kBAAQ,CAAC,GAAG,KAAK,gBAAgB,KAAK,EAAE,CAAC,EAAE,MAAM,MAAM,GAAG,CAAC;AAAA,QAC5D,WAAW,KAAK,SAAS,eAAe,SAAS;AAChD,kBAAQ,CAAC,GAAG,KAAK,gBAAgB,KAAK,EAAE,CAAC,EAAE,MAAM,MAAM,GAAG,CAAC;AAAA,QAC5D,OAAO;AACN,gBAAM,oBAAoB,KAAK,SAAS;AAAA,QACzC;AACA,YAAI,MAAO,QAAO,iBAAiB;AAAA,MACpC;AACA,YAAM,KAAK,IAAI,SAAS;AAAA,QACvB,MAAM;AAAA,QACN,IAAI,KAAK;AAAA,QACT;AAAA,MACD,CAAC;AAAA,IACF;AAAA,EACD,CAAC;AACF;AAEA,SAAS,eAAe,aAAa,MAAM,MAAM;AAChD,QAAM,eAAe,YAAY,IAAI,EAAE;AACvC,QAAM,OAAO,YAAY,IAAI,EAAE,MAAM,OAClC,eAAe,YAAY,IAAI,EAAE,MAAM,IAAI,IAC3C,YAAY,IAAI,EAAE,MAAM;AAC3B,QAAM,MAAM,YAAY,IAAI,EAAE,MAAM,MAAM,eAAe,YAAY,IAAI,EAAE,MAAM,GAAG,IAAI,YAAY,IAAI,EAAE,MAAM;AAChH,MAAI,KAAK,SAAS,eAAe,aAAa;AAC7C,UAAM,MAAM,YAAY,IAAI,EAAE,MAAM,MAAM,eAAe,YAAY,IAAI,EAAE,MAAM,GAAG,IAAI,YAAY,IAAI,EAAE,MAAM;AAIhH,SAAK,gBAAgB,KAAK;AAAA,MACzB,EAAE,OAAO,aAAa;AAAA,MACtB,EAAE,OAAO,IAAI;AAAA,MACb,EAAE,OAAO,YAAY,IAAI,EAAE,MAAM,aAAa;AAAA,MAC9C,EAAE,OAAO,KAAK;AAAA;AAAA,MAEd,EAAE,OAAO,IAAI;AAAA,MACb,EAAE,OAAO,YAAY,IAAI,EAAE,MAAM,aAAa;AAAA,IAC/C,CAAC;AAAA,EACF,WAAW,KAAK,SAAS,eAAe,SAAS;AAChD,UAAM,MAAM,YAAY,IAAI,EAAE,MAAM,MAAM,eAAe,YAAY,IAAI,EAAE,MAAM,GAAG,IAAI,YAAY,IAAI,EAAE,MAAM;AAChH,UAAM,KAAK,YAAY,IAAI,EAAE,MAAM,KAAK,eAAe,YAAY,IAAI,EAAE,MAAM,EAAE,IAAI,YAAY,IAAI,EAAE,MAAM;AAC7G,SAAK,gBAAgB,KAAK;AAAA,MACzB,EAAE,OAAO,aAAa;AAAA,MACtB,EAAE,OAAO,IAAI;AAAA,MACb,EAAE,OAAO,GAAG;AAAA,MACZ,EAAE,OAAO,YAAY,IAAI,EAAE,MAAM,aAAa;AAAA,MAC9C,EAAE,OAAO,KAAK;AAAA,MACd,EAAE,OAAO,IAAI;AAAA,MACb,EAAE,OAAO,YAAY,IAAI,EAAE,MAAM,aAAa;AAAA,IAC/C,CAAC;AAAA,EACF,OAAO;AACN,UAAM,oBAAoB,KAAK,SAAS;AAAA,EACzC;AACD;AAEA,SAAS,kBAAkB,MAAM,cAAc;AAC9C,QAAM,SAAS,KAAK,IAAI;AACxB,SAAO,UAAU,GAAG,EAAE,OAAO;AAC7B,QAAM,YAAY;AAClB,QAAM,aAAa;AACnB,QAAM,MAAM,OAAO,OAAO,KAAK,EAAE,KAAK,SAAS,SAAS,EAAE,KAAK,UAAU,UAAU;AACnF,QAAM,SAAS;AACf,QAAM,WAAW;AACjB,QAAM,SAAS;AACf,QAAM,SAAS;AACf,QAAM,SAAS,IAAI,OAAO,GAAG;AAC7B,QAAM,SAAS,IAAI,OAAO,GAAG;AAC7B,QAAM,OAAO;AACb,QAAM,OAAO;AAEb,QAAM,WAAW,KAAK,YAAY,KAAK,OAAO;AAC9C,QAAM,YAAY,CAAC;AACnB,WAAS,IAAI,GAAG,IAAI,SAAS,MAAM,QAAQ,KAAK;AAC/C,UAAM,OAAO,EAAE,MAAM,SAAS,MAAM,CAAC,GAAG,aAAa,SAAS,YAAY,CAAC,EAAE;AAC7E,cAAU,KAAK,IAAI;AAAA,EACpB;AACA,YAAU,KAAK,CAAC,GAAG,MAAM,EAAE,cAAc,EAAE,WAAW;AAEtD,QAAM,SAAS,OAAY,EACzB,OAAO,CAAC,GAAG,UAAU,MAAM,CAAC,EAC5B,MAAM,CAAC,MAAM,YAAY,QAAQ,CAAC;AACpC,QAAM,SAAS,OAAY,EACzB,OAAO,CAAC,KAAK,CAAC,CAAC,EACf,MAAM,CAAC,QAAQ,aAAa,IAAI,CAAC;AAEnC,SAAO,KAAK,aAAa,eAAe,OAAO,KAAa;AAC5D,SAAO,KAAK,aAAa,kBAA0B,aAAa,QAAQ,GAAG;AAC3E,QAAM,OAAO,IACX,OAAO,MAAM,EACb,KAAK,WAAW,EAChB,KAAK,QAAQ,OAAO,EACpB,KAAK,eAAe,OAAO,EAC3B,KAAK,aAAa,eAAe,OAAO,UAAU,SAAS,CAAC,IAAI,OAAO,aAAa,OAAO,IAAI,UAAU,GAAG;AAC9G,QAAM,OAAO,IACX,OAAO,MAAM,EACb,KAAK,wBAAwB,EAC7B,KAAK,QAAQ,OAAO,EACpB,KAAK,eAAe,QAAQ,EAC5B,KAAK,KAAK,OAAO,CAAC,EAClB,KAAK,KAAK,CAAC,YAAY,GAAG,EAC1B,KAAK,aAAa,aAAa;AACjC,MAAI,WAAW;AACf,QAAM,QAAQ,IACZ,OAAO,MAAM,EACb,KAAK,KAAK,OAAO,YAAY,YAAY,EACzC,KAAK,QAAQ,OAAO,EACpB,KAAK,eAAe,OAAO,EAC3B,KAAK,aAAa,WAAW,IAAI,EACjC,KAAK,aAAa,eAAe,OAAO,MAAM,SAAS,IAAI,GAAG;AAGhE,MAAI,aAAa,MAAM,KAAK,EAAE,QAAQ;AACtC,SAAO,WAAW,QAAQ,YAAY,QAAQ,WAAW,SAAU,SAAS,MAAO,GAAG;AACrF,gBAAY;AACZ,UAAM,KAAK,EAAE,aAAa,aAAa,WAAW,IAAI;AACtD,iBAAa,MAAM,KAAK,EAAE,QAAQ;AAAA,EACnC;AAEA,QAAM,MAAM,aAAa,KAAK,OAAO,YAAY,YAAY,EAAE;AAC/D,MAAI,OAAO,QAAQ,UAAU;AAC5B,QAAI;AACJ,QAAI,OAAO,KAAK;AAEf,gBAAU,OAAQ,UAAU,SAAS,IAAK,GAAG,IAAI,OAAO,aAAa,OAAO;AAAA,IAC7E,OAAO;AACN,gBAAU,OAAQ,UAAU,SAAS,MAAO,GAAG,IAAI,OAAO,aAAa,OAAO;AAAA,IAC/E;AACA,UAAM,WAAW,IACf,OAAO,MAAM,EACb,KAAK,SAAS,eAAe,GAAG,CAAC,EACjC,KAAK,QAAQ,OAAO,EACpB,KAAK,eAAe,QAAQ,EAC5B,KAAK,aAAa,eAAe,UAAU,GAAG;AAAA,EACjD,OAAO;AAEN,UAAM,sBAAsB;AAAA,EAC7B;AAEA,YAAU;AAAA,IACT,MAAM,OAAO,KAAY,SAAS,EAAE,MAAM,MAAM,CAAC;AAAA,IACjD,OAAO;AAAA,IACP,UAAU;AAAA,IACV,UAAU;AAAA,EACX,CAAC;AACD,YAAU;AAAA,IACT,MAAM,OAAO,KAAY,WAAW,EAAE,MAAM,MAAM,CAAC;AAAA,IACnD,OAAO;AAAA,IACP,UAAU;AAAA,IACV,UAAU;AAAA,EACX,CAAC;AAGD,MAAI,OAAO,KAAK,YAAY,EAAE,SAAS,KAAK,OAAO,YAAY,YAAY,GAAG;AAC7E,UAAM,YAAY,aAAa,KAAK,OAAO,YAAY,YAAY,EAAE,aAAa,MAAM,GAAG;AAC3F,UAAM,cAAc,MAAM,UAAU;AACpC,UAAM,QAAQ,IAAI,OAAO,GAAG;AAE5B,QAAI,SAAS;AACb,aAAS,IAAI,GAAG,IAAI,UAAU,QAAQ,KAAK;AAC1C,YAAM,QAAQ;AAEd,UAAI,UAAU,SAAS,UAAU,CAAC,EAAE,IAAI,GAAG;AAC1C,iBAAS,SAAS;AAClB,cACE,OAAO,MAAM,EACb,MAAM,UAAU,KAAK,EACrB,KAAK,MAAM,OAAO,CAAC,CAAC,EACpB,KAAK,MAAM,UAAU,EACrB,KAAK,MAAM,OAAO,CAAC,CAAC,EACpB,KAAK,MAAM,aAAa,OAAO,MAAM,MAAM;AAAA,MAC9C;AACA,YACE,OAAO,MAAM,EACb,MAAM,UAAU,KAAK,EACrB,KAAK,MAAM,OAAO,CAAC,CAAC,EACpB,KAAK,MAAM,OAAO,MAAM,KAAK,CAAC,EAC9B,KAAK,MAAM,OAAO,IAAI,CAAC,CAAC,EACxB,KAAK,MAAM,OAAO,MAAM,MAAM,CAAC;AAAA,IAClC;AAAA,EACD,OAAO;AAEN,UAAM;AAAA,EACP;AAMD;AAiEO,SAAS,uBAAuB,YAAY,CAAC,GAAG;AACtD,QAAM,WAAW;AAAA,IAChB,YAAY;AAAA,IACZ,kBAAkB;AAAA,IAClB,cAAc;AAAA,IACd,SAAS;AAAA,IACT,cAAc;AAAA,IACd,0BAA0B;AAAA,IAC1B,0BAA0B;AAAA,IAC1B,yBAAyB;AAAA,IACzB,YAAY;AAAA,IACZ,aAAa;AAAA,EACd;AACA,MAAI,KAAK,MAAM,eAAe,QAAQ,kBAAkB,CAAC,EAAE,WAAW;AAErE,aAAS,cAAc;AAAA,EACxB;AACA,SAAO,OAAO,OAAO,UAAU,SAAS;AACzC;AAEA,eAAsB,cAAc,MAAM,KAAK;AAE9C,MAAI;AACH,UAAM,SAAS;AAAA;AAAA;AAAA,MAGd,UAAU;AAAA,QACT,MAAM,uBAAuB,KAAK,SAAS;AAAA,MAC5C;AAAA,IACD;AACA,WAAO,UAAU,QAAQ,IAAI;AAAA,EAC9B,SAAS,GAAG;AACX,UAAM,GAAG,CAAC;AAAA,EACX;AACD;AAEO,IAAM,WAAW,YAAY,IAAI;AAEjC,IAAM,gBAAgB;AAEtB,SAAS,iBAAiB,QAAQ,gBAAgB;AAUxD,iBAAe,SAAS;AAAA,IACvB,QAAQ;AAAA,MACP,WAAW;AAAA,IACZ;AAAA,EACD,CAAC;AACF;AAEA,eAAe,QAAQ,MAAM,KAAK;AAEjC,MAAI,WAAW,MAAM,WAAW,MAAM;AACtC,MAAI,WAAW,MAAM,WAAW,OAAO;AACvC,QAAM,OAAO,MAAM,SAAS,qBAAqB,EAAE,KAAK,CAAC;AACzD,MAAI,WAAW,MAAM,WAAW,MAAM;AACtC,MAAI,WAAW,MAAM,WAAW,OAAO;AACvC,SAAO;AACR;",
+  "names": []
+}

package/dist/chunk-JNBJG57F.js

@@ -0,0 +1,448 @@
+import {
+  getDefaultViolinSettings
+} from "./chunk-ROJ3LJLE.js";
+import {
+  getDefaultScatterSettings
+} from "./chunk-3LYZMOLO.js";
+import {
+  getDefaultBoxplotSettings
+} from "./chunk-5QTJUPFS.js";
+import {
+  PlotBase,
+  defaultUiLabels,
+  fillTermWrapper,
+  filterRxCompInit,
+  getDefaultBarSettings,
+  term0_term2_defaultQ
+} from "./chunk-WY2PGUVX.js";
+import {
+  importPlot
+} from "./chunk-MBUQ34CF.js";
+import {
+  Menu
+} from "./chunk-HYOEWQ5P.js";
+import {
+  Tabs
+} from "./chunk-HBW42TDT.js";
+import {
+  copyMerge,
+  getCompInit
+} from "./chunk-M3J4MINX.js";
+import {
+  isNumericTerm
+} from "./chunk-NNFAUP2I.js";
+
+// plots/summary.ts
+var SummaryPlot = class _SummaryPlot extends PlotBase {
+  constructor(opts, api) {
+    super(opts, api);
+    this.components = {};
+    // expected class-specific props
+    this.chartsByType = {};
+    this.configTermKeys = ["term", "term0", "term2"];
+    this.type = _SummaryPlot.type;
+    this.dom = this.getDom(opts);
+    this.tabsData = this.getTabsData();
+    this.chartToggles = new Tabs({ holder: this.dom.chartToggles, tabs: this.tabsData, noContent: true });
+    this.components = {
+      plots: {}
+    };
+  }
+  static {
+    this.type = "summary";
+  }
+  preApiFreeze(api) {
+    api.getError = () => {
+      return this.error;
+    };
+  }
+  getDom(opts) {
+    const holder = opts.holder;
+    holder.header.style("padding", 0);
+    const paneTitleDiv = holder.header.append("div").style("display", "inline-block").style("color", "#555").style("padding-left", "7px");
+    return {
+      tip: new Menu({ padding: "0px" }),
+      holder,
+      body: holder.body.style("white-space", "nowrap").style("overflow-x", "auto"),
+      // will hold no data notice or the page title in multichart views
+      errdiv: holder.body.append("div").attr("class", "sja_errorbar").style("display", "none").style("padding", "5px"),
+      loading: holder.body.append("div").style("display", "none").style("padding", "5px").html("Loading ..."),
+      // dom.viz will hold the rendered view
+      viz: holder.body.append("div"),
+      plotDivs: {},
+      paneTitleDiv,
+      paneTitleText: paneTitleDiv.append("div").classed("sjpp-term-header", true).style("display", "inline-block").style("vertical-align", "sub"),
+      chartToggles: paneTitleDiv.append("div").style("display", "inline-block").style("margin-left", "10px"),
+      localRecoverDiv: paneTitleDiv.append("div").style("display", "inline-block"),
+      filterDiv: holder.header.append("div").style("display", "inline-block").style("zoom", 0.9)
+    };
+  }
+  getTabsData() {
+    const callback = (event, tab) => this.tabClickCallback(event, tab);
+    return [
+      {
+        childType: "barchart",
+        label: "Barchart",
+        isVisible: () => true,
+        disabled: () => false,
+        getConfig: async () => {
+          if (!this.config) return;
+          const config = { id: this.id, childType: "barchart" };
+          const { term, term2 } = this.config || {};
+          if (term) {
+            const mode = isNumericTerm(term?.term) ? "discrete" : term?.q.mode || "discrete";
+            config.term = await this.getWrappedTermCopy(term, mode);
+          }
+          if (term2) {
+            const mode = isNumericTerm(term2.term) ? "discrete" : term2.q.mode || "discrete";
+            config.term2 = await this.getWrappedTermCopy(term2, mode);
+          }
+          return config;
+        },
+        active: true,
+        callback
+      },
+      {
+        childType: "violin",
+        label: "Violin",
+        disabled: () => false,
+        isVisible: () => isNumericTerm(this.config?.term?.term) || isNumericTerm(this.config?.term2?.term),
+        getConfig: async () => {
+          const term = this.config?.term;
+          const term2 = this.config.term2;
+          let _term, _term2;
+          this.violinContTerm = isNumericTerm(term?.term) ? "term" : "term2";
+          if (this.violinContTerm && this.violinContTerm === "term" || term.q?.mode == "continuous") {
+            _term = await this.getWrappedTermCopy(term, "continuous");
+            _term2 = await this.getWrappedTermCopy(term2, "discrete");
+            this.violinContTerm = "term";
+          } else if (this.violinContTerm && this.violinContTerm === "term2" || term2?.q?.mode == "continuous") {
+            _term = await this.getWrappedTermCopy(term, "discrete");
+            _term2 = await this.getWrappedTermCopy(term2, "continuous");
+            this.violinContTerm = "term2";
+          } else if (term2?.q?.mode == "discrete") {
+            _term = await this.getWrappedTermCopy(term, "discrete");
+            _term2 = await this.getWrappedTermCopy(term2, "continuous");
+            this.violinContTerm = "term2";
+          } else {
+            _term = await this.getWrappedTermCopy(term, "continuous");
+            _term2 = await this.getWrappedTermCopy(term2, "discrete");
+            this.violinContTerm = "term";
+          }
+          const config = { childType: "violin", term: _term, term2: _term2 };
+          return config;
+        },
+        active: false,
+        callback
+      },
+      {
+        childType: "boxplot",
+        label: "Boxplot",
+        disabled: () => false,
+        isVisible: () => isNumericTerm(this.config?.term?.term) || isNumericTerm(this.config?.term2?.term),
+        getConfig: async () => {
+          const _term = this.config?.term;
+          const _term2 = this.config.term2;
+          let termMode = "continuous", term2Mode = "discrete";
+          this.boxContTerm = isNumericTerm(_term?.term) ? "term" : "term2";
+          if (this.boxContTerm && this.boxContTerm === "term" || _term.q?.mode == "continuous") {
+            termMode = "continuous";
+            term2Mode = "discrete";
+            this.boxContTerm = "term";
+          } else if (this.boxContTerm && this.boxContTerm === "term2" || _term2?.q?.mode == "continuous") {
+            termMode = "discrete";
+            term2Mode = "continuous";
+            this.boxContTerm = "term2";
+          } else if (_term2?.q?.mode == "discrete") {
+            termMode = "discrete";
+            term2Mode = "continuous";
+            this.boxContTerm = "term2";
+          }
+          const term = await this.getWrappedTermCopy(_term, termMode);
+          const term2 = await this.getWrappedTermCopy(_term2, term2Mode);
+          const config = {
+            childType: "boxplot",
+            term,
+            term2
+          };
+          return config;
+        },
+        active: false,
+        callback
+      },
+      {
+        childType: "sampleScatter",
+        label: "Scatter",
+        disabled: () => false,
+        isVisible: () => {
+          return isNumericTerm(this.config?.term.term) && isNumericTerm(this.config?.term2?.term);
+        },
+        getConfig: async () => {
+          const _term = await this.getWrappedTermCopy(this.config?.term, "continuous");
+          const _term2 = await this.getWrappedTermCopy(this.config?.term2, "continuous");
+          const config = {
+            childType: "sampleScatter",
+            term: _term,
+            term2: _term2,
+            groups: [],
+            term0: this.config.term0
+          };
+          return config;
+        },
+        active: false,
+        callback
+      }
+    ];
+  }
+  async init(appState) {
+    const state = this.getState(appState);
+    const config = structuredClone(state.config);
+    this.initUi(this.opts, config);
+    if (config?.hidePlotFilter) return;
+    this.components.filter = await filterRxCompInit({
+      app: this.app,
+      vocabApi: this.app.vocabApi,
+      parentId: this.id,
+      holder: this.dom.filterDiv,
+      hideLabel: true,
+      emptyLabel: "+Add new filter",
+      callback: (filter) => {
+        this.app.dispatch({
+          id: this.id,
+          type: "plot_edit",
+          config: { filter }
+        });
+      }
+    });
+  }
+  reactsTo(action) {
+    if (action.type.includes("cache_termq")) return true;
+    if (action.type.startsWith("plot_")) {
+      if (action.type.startsWith("plot_")) {
+        return action.id === this.id || action.id == this.parentId;
+      }
+    }
+    if (action.type.startsWith("filter")) return true;
+    if (action.type.startsWith("cohort")) return true;
+    if (action.type == "app_refresh") return true;
+    return false;
+  }
+  getState(appState) {
+    const config = appState.plots.find((p) => p.id === this.id);
+    if (!config) {
+      throw `No plot with id='${this.id}' found. Did you set this.id before this.api = getComponentApi(this)?`;
+    }
+    return {
+      termfilter: appState.termfilter,
+      config,
+      // quick fix to skip history tracking as needed
+      _scope_: appState._scope_
+    };
+  }
+  async main() {
+    delete this.error;
+    this.dom.errdiv.style("display", "none").html("");
+    this.dom.loading.style("display", "");
+    this.config = await this.getMutableConfig();
+    this.maySetSandboxHeader();
+    if (!this.components.plots[this.config.childType]) {
+      await this.setComponent(this.config);
+    }
+    this.dom.loading.style("display", "none");
+    this.render();
+    const activeTabIndex = this.tabsData.findIndex((tab) => tab.childType == this.config.childType);
+    this.chartToggles.update(activeTabIndex);
+    const numVisTabs = this.tabsData.filter((d) => d.isVisible()).length;
+    if (numVisTabs > 1) this.dom.chartToggles.style("display", "inline-block");
+    else this.dom.chartToggles.style("display", "none");
+  }
+  maySetSandboxHeader() {
+    const { term, term2, headerText, assayCohortTitle } = this.config;
+    const mainTerm = term.getTitleText?.() || term.term.name;
+    const _headerPretext = headerText ? `${headerText} ` : "";
+    const _headerSuffix = assayCohortTitle ? ` (${assayCohortTitle})` : "";
+    const titleBase = mainTerm + _headerSuffix;
+    if (term2?.type) {
+      this.dom.paneTitleText.html(`${_headerPretext}${term2.getTitleText?.() || term2.term.name} vs ${titleBase}`);
+    } else {
+      this.dom.paneTitleText.html(`${_headerPretext}${titleBase}`);
+    }
+  }
+  async setComponent(config) {
+    const _ = await importPlot(config.childType, `unsupported childType='${config.childType}'`);
+    this.dom.plotDivs[config.childType] = this.dom.viz.append("div");
+    const componentOpts = {
+      app: this.app,
+      holder: this.dom.plotDivs[config.childType],
+      id: this.id,
+      parent: this.api
+    };
+    if (config.parentId) componentOpts.parentId = config.parentId;
+    this.components.plots[config.childType] = await _.componentInit(componentOpts);
+  }
+  destroy() {
+    this.dom.holder.app_div.selectAll("*").remove();
+    this.dom.holder.app_div.remove();
+    for (const key in this.dom) {
+      delete this.dom[key];
+    }
+  }
+  initUi(opts, config) {
+    this.dom.paneTitleText.html(config.term.term.name);
+    this.chartToggles.main();
+  }
+  async tabClickCallback(event, tab) {
+    if (!tab || !tab.getConfig) return;
+    let config;
+    try {
+      this.dom.viz.style("display", "none");
+      this.dom.loading.style("display", "");
+      config = await tab.getConfig();
+      this.dom.loading.style("display", "none");
+      this.dom.viz.style("display", "");
+      if (config)
+        this.app.dispatch({
+          type: "plot_edit",
+          id: this.id,
+          config
+        });
+    } catch (e) {
+      this.dom.loading.style("display", "none");
+      this.error = e;
+      this.dom.errdiv.style("display", "").html(`Error: ${e.message || e.error || e}`);
+    }
+  }
+  async getWrappedTermCopy(term, mode) {
+    if (!term) return;
+    const tw = structuredClone(term);
+    tw.q.mode = mode;
+    await fillTermWrapper(tw, this.app.vocabApi);
+    return tw;
+  }
+  render() {
+    for (const childType of Object.keys(this.components.plots)) {
+      const chart = this.components.plots[childType];
+      if (chart.type != this.config.childType) {
+        this.dom.plotDivs[chart.type].style("display", "none");
+      }
+    }
+    this.dom.plotDivs[this.config.childType].style("display", "");
+  }
+  getChartImages() {
+    const chart = this.components.plots[this.config.childType];
+    if (chart?.getChartImages) {
+      return chart.getChartImages();
+    }
+    return null;
+  }
+};
+var summaryInit = getCompInit(SummaryPlot);
+var componentInit = summaryInit;
+async function getPlotConfig(opts, app) {
+  if (!opts.term) throw "summary getPlotConfig: opts.term{} missing";
+  try {
+    opts.term = await fillTermWrapper(
+      opts.term,
+      app.vocabApi,
+      opts.term.q || { geneVariant: { type: "predefined-groupset" } }
+    );
+    if (opts.term2)
+      opts.term2 = await fillTermWrapper(
+        opts.term2,
+        app.vocabApi,
+        opts.term2.bins || opts.term2.q ? void 0 : term0_term2_defaultQ
+      );
+    if (opts.term0)
+      opts.term0 = await fillTermWrapper(
+        opts.term0,
+        app.vocabApi,
+        opts.term0.bins || opts.term0.q ? void 0 : term0_term2_defaultQ
+      );
+    if (opts.colorTW) opts.colorTW = await fillTermWrapper(opts.colorTW, app.vocabApi);
+    if (opts.shapeTW) opts.shapeTW = await fillTermWrapper(opts.shapeTW, app.vocabApi);
+    if (opts.scaleDotTW) opts.scaleDotTW = await fillTermWrapper(opts.scaleDotTW, app.vocabApi);
+  } catch (e) {
+    if (e.stack) console.log(e.stack);
+    throw `${e} [summary getPlotConfig()]`;
+  }
+  const config = {
+    chartType: "summary",
+    childType: "barchart",
+    term: opts.term,
+    groups: [],
+    controlLabels: Object.assign({}, defaultUiLabels, app.vocabApi.termdbConfig.uiLabels || {}),
+    //Allow hiding the plot filter when appropriate (e.g. single cell summary plots)
+    hidePlotFilter: opts.hidePlotFilter || false,
+    settings: {
+      controls: {
+        isOpen: false
+      },
+      common: {
+        use_logscale: false,
+        // flag for y-axis scale type, 0=linear, 1=log
+        use_percentage: false
+        // Move to barchart settings
+        // barheight: 300, // maximum bar length
+        // barwidth: 20, // bar thickness
+        // barspace: 2 // space between two bars
+      },
+      barchart: getDefaultBarSettings(app),
+      violin: getDefaultViolinSettings(app),
+      boxplot: getDefaultBoxplotSettings(app),
+      sampleScatter: getDefaultScatterSettings(opts)
+    },
+    mayAdjustConfig(config2, edits = {}) {
+      return mayAdjustConfig(config2, opts, edits);
+    }
+  };
+  if (config.term.term.type == "geneVariant") config.settings.barchart.colorBars = true;
+  copyMerge(config, opts);
+  Object.assign(config.controlLabels, app.vocabApi.termdbConfig.uiLabels || {});
+  return config;
+}
+var discreteByContinuousPlots = /* @__PURE__ */ new Set(["violin", "boxplot"]);
+function mayAdjustConfig(config, opts, edits = {}) {
+  if (edits.childType) {
+    if (config.childType != edits.childType) throw `action.config.childType was not applied in mass store.plot_edit()`;
+    return;
+  }
+  if (config.term?.q?.mode == "continuous" && config.term2?.q?.mode == "continuous") {
+    config.childType = "sampleScatter";
+  } else if (config.term?.term?.type == "termCollection") {
+    if (config.term.term.memberType == "categorical") {
+      config.childType = "barchart";
+    } else if (config.term.term.memberType == "numeric") {
+      if (config.childType) {
+        if (config.childType == "barchart") {
+          config.childType = "violin";
+        } else {
+        }
+      } else {
+        config.childType = "violin";
+      }
+    } else {
+      throw new Error("config.term.term.memberType not categorical or numeric");
+    }
+  } else if (config.term?.q?.mode == "continuous" || config.term2?.q?.mode == "continuous") {
+    if (!discreteByContinuousPlots.has(config.childType)) {
+      if (opts.childType && !discreteByContinuousPlots.has(opts.childType)) {
+        console.warn(
+          `ignoring summary opts.childType='${opts.childType}' since it does not support plotting discrete by continuous tw's`
+        );
+        config.childType = "violin";
+      } else {
+        config.childType = opts.childType || "violin";
+      }
+    }
+  } else {
+    config.childType = "barchart";
+  }
+}
+
+export {
+  summaryInit,
+  componentInit,
+  getPlotConfig,
+  mayAdjustConfig
+};
+//# sourceMappingURL=chunk-JNBJG57F.js.map