@sjcrh/proteinpaint-client 2.193.0 → 2.194.0

package/dist/{chunk-K3OJJZCQ.js → chunk-INU357UG.js}

@@ -1,6 +1,6 @@
 import {
   keyupEnter
-} from "./chunk-L7VDSIM7.js";
+} from "./chunk-RHGAE6PY.js";
 import {
   get_bin_label,
   get_bin_range_equation
@@ -227,4 +227,4 @@ var NumCustomBinEditor = class {
 export {
   NumCustomBinEditor
 };
-//# sourceMappingURL=chunk-K3OJJZCQ.js.map
+//# sourceMappingURL=chunk-INU357UG.js.map

package/dist/{chunk-NU2W6B7I.js → chunk-IZ3BPOTQ.js}

@@ -1,6 +1,6 @@
 import {
   sayerror
-} from "./chunk-L7VDSIM7.js";
+} from "./chunk-RHGAE6PY.js";
 import {
   dofetch3
 } from "./chunk-6G4YOMWW.js";
@@ -443,7 +443,7 @@ var SampleView = class _SampleView {
         if (data.sampleDZImages?.length > 0) {
           const cellDiv = div.append("div").style("display", "inline-block");
           this.dziPlots.push({ sample, cellDiv });
-          const dziviewer = await import("./plot.dzi-THJIFHIS.js");
+          const dziviewer = await import("./plot.dzi-K6KI52L7.js");
           dziviewer.default(state.vocab.dslabel, cellDiv, this.app.opts.genome, sample.sampleName, data.sampleDZImages);
         }
       }
@@ -454,7 +454,7 @@ var SampleView = class _SampleView {
       for (const sample of samples) {
         const cellDiv = div.append("div").style("display", "inline-block");
         this.wsiPlots.push({ sample, cellDiv });
-        const wsiViewer = await import("./plot.wsi-MR6JMOXW.js");
+        const wsiViewer = await import("./plot.wsi-Y6FZWHXT.js");
         wsiViewer.default(state.vocab.dslabel, cellDiv, this.app.opts.genome, sample.sampleName);
       }
     }
@@ -466,7 +466,7 @@ var SampleView = class _SampleView {
         const cellDiv = div.append("div").style("display", "inline-block");
         this.discoPlots.push({ sample, cellDiv });
         const header = cellDiv.insert("div");
-        const discoPlotImport = await import("./plot.disco-5K2SCKJ4.js");
+        const discoPlotImport = await import("./plot.disco-I2VLOSAU.js");
         const found = await discoPlotImport.default(
           state.termdbConfig,
           state.vocab.dslabel,
@@ -499,7 +499,7 @@ var SampleView = class _SampleView {
           this.singleSamplePlots[k].push({ sample, cellDiv: plotDiv });
           if (state.samples.length > 1)
             plotDiv.insert("div").style("font-weight", "bold").text(`${sample.sampleName} ${label}`);
-          const ssgqImport = await import("./plot.ssgq-FSIUIV3A.js");
+          const ssgqImport = await import("./plot.ssgq-L67X4FUG.js");
           const found = await ssgqImport.plotSingleSampleGenomeQuantification(
             state.termdbConfig,
             state.vocab.dslabel,
@@ -529,7 +529,7 @@ var SampleView = class _SampleView {
           this.brainPlots.push({ sample, cellDiv: plotDiv });
           if (state.samples.length > 1)
             plotDiv.insert("div").style("font-weight", "bold").style("padding-left", "20px").text(sample.sampleName);
-          const brainImagingImport = await import("./plot.brainImaging-DYPKMNHL.js");
+          const brainImagingImport = await import("./plot.brainImaging-3CB4WYQ4.js");
           brainImagingImport.default(
             state.termdbConfig,
             state.vocab.dslabel,
@@ -549,7 +549,7 @@ var SampleView = class _SampleView {
         this.imagePlots.push({ sample, cellDiv });
         if (state.samples.length > 1)
           cellDiv.insert("div").style("font-weight", "bold").style("padding-left", "20px").text(sample.sampleName);
-        const imagePlotImport = await import("./imagePlot-3DF7ZH3U.js");
+        const imagePlotImport = await import("./imagePlot-HNJDBPO4.js");
         imagePlotImport.renderImagePlot(state, cellDiv, sample);
       }
     }
@@ -830,4 +830,4 @@ export {
   searchSampleInput,
   getSamplesRelated
 };
-//# sourceMappingURL=chunk-NU2W6B7I.js.map
+//# sourceMappingURL=chunk-IZ3BPOTQ.js.map

package/dist/{chunk-VRLC7DAU.js → chunk-J5GTIQTL.js}

@@ -3,30 +3,30 @@ import {
   init_mdsjson,
   mayLaunchGdcPlotFromRunpp,
   parse
-} from "./chunk-Y45JIQ5Y.js";
+} from "./chunk-MCYVUHEZ.js";
 import {
   bulkembed,
   bulkui,
   loadstudycohort
-} from "./chunk-PXCFA4ZQ.js";
+} from "./chunk-2P3U6XTF.js";
 import {
   childCorsMessage
 } from "./chunk-PRZWSBMA.js";
 import {
   findgenemodel_bysymbol
-} from "./chunk-OR43PGBV.js";
+} from "./chunk-4E6HJ4ZW.js";
 import {
   urlmap_default
 } from "./chunk-WKNI3HRQ.js";
 import {
   block_init_default
-} from "./chunk-E6XLLQCG.js";
+} from "./chunk-BKPV67UA.js";
 import {
   newpane,
   renderSandboxFormDiv,
   sayerror,
   tkt
-} from "./chunk-L7VDSIM7.js";
+} from "./chunk-RHGAE6PY.js";
 import {
   string2pos
 } from "./chunk-HJ6L54YS.js";
@@ -1799,7 +1799,7 @@ function runproteinpaint(arg) {
     selectAll_default(".sja_pane").remove();
     return;
   }
-  app.holder = select_default(arg.holder || document.body).append("div").attr("class", "sja_root_holder").attr("data-ppclientversion", `2.193.0`).style("font-size", "1em").style("color", "black").on("click", (e) => {
+  app.holder = select_default(arg.holder || document.body).append("div").attr("class", "sja_root_holder").attr("data-ppclientversion", `2.194.0`).style("font-size", "1em").style("color", "black").on("click", (e) => {
     e.stopPropagation();
     if (e.target.tagName == "BUTTON") e.preventDefault();
   });
@@ -1850,7 +1850,7 @@ function runproteinpaint(arg) {
       }
     }
     if (!arg.noheader && !arg.mass && !arg.massSessionId && !arg.massSessionFile && !window.location.search.includes("noheader") && !window.location.search.includes("mass-session-id") && !window.location.search.includes("mass-session-file") && !window.location.search.includes("mass-session-url") && !window.location.search.includes("massnative") && !window.location.search.includes("mass")) {
-      const _ = await import("./AppHeader-UKB344GC.js");
+      const _ = await import("./AppHeader-VIQ2VZPI.js");
       const appHeader = new _.AppHeader({
         headtip,
         app,
@@ -2142,7 +2142,7 @@ async function parseEmbedThenUrl(arg, app) {
       getDatasetAccessToken: arg.getDatasetAccessToken,
       addLoginCallback: arg.addLoginCallback
     };
-    const _ = await import("./app-KHZT2BVF.js");
+    const _ = await import("./app-7MRKEE2J.js");
     _.appInit(opts);
     return;
   }
@@ -2171,7 +2171,7 @@ async function parseEmbedThenUrl(arg, app) {
       state,
       genome: app.genomes[state.vocab.genome]
     };
-    const _ = await import("./app-KHZT2BVF.js");
+    const _ = await import("./app-7MRKEE2J.js");
     _.appInit(opts);
     return;
   }
@@ -2253,7 +2253,7 @@ async function launchmdssamplescatterplot(arg, app) {
     app.error0("neither .dataset or .analysisdata is given");
     return;
   }
-  import("./mds.samplescatterplot-JKU5B4QR.js").then((_) => {
+  import("./mds.samplescatterplot-YDMRZFS7.js").then((_) => {
     _.init(arg, app.holder0, app.debugmode);
   });
 }
@@ -2283,7 +2283,7 @@ function launchmdssurvivalplot(arg, app) {
       p.renderplot = 1;
     }
   }
-  import("./mds.survivalplot-OP7Y4D3L.js").then((_) => {
+  import("./mds.survivalplot-INJA2NDC.js").then((_) => {
     _.init(arg, app.holder0, app.debugmode);
   });
 }
@@ -2299,7 +2299,7 @@ function launch_fimo(arg, app) {
   }
   arg.genome = genome;
   arg.div = app.holder0;
-  import("./mds.fimo-UJYESPNC.js").then((_) => {
+  import("./mds.fimo-E5EXGT75.js").then((_) => {
     _.init(arg);
   });
 }
@@ -2319,7 +2319,7 @@ function launchhic(hic, app) {
   }
   hic.hostURL = app.hostURL;
   hic.holder = app.holder0;
-  import("./HicApp-BP7PSXY2.js").then(async (_) => {
+  import("./HicApp-YTQNK5DC.js").then(async (_) => {
     await _.hicInit(hic, app.debugmode);
   });
 }
@@ -2336,7 +2336,7 @@ function launchsamplematrix(cfg, app) {
   cfg.hostURL = app.hostURL;
   cfg.holder = app.holder0;
   cfg.debugmode = app.debugmode;
-  import("./samplematrix-HL445X7I.js").then((_) => {
+  import("./samplematrix-FU3EZF6M.js").then((_) => {
     new _.Samplematrix(cfg);
   });
 }
@@ -2582,7 +2582,7 @@ async function launchblock(arg, app) {
       }
     }
   }
-  return import("./block-TCWYUB4R.js").then((b) => {
+  return import("./block-BYXWS7H7.js").then((b) => {
     app.block = new b.Block(blockinitarg);
     return app;
   });
@@ -2590,7 +2590,7 @@ async function launchblock(arg, app) {
 function launchfusioneditor(arg, app) {
   if (arg.fusioneditor.uionly) {
     const [inputdiv, gselect, filediv, saydiv, visualdiv] = renderSandboxFormDiv(app.holder0, app.genomes);
-    import("./svmr-TIIMFKG7.js").then((p) => {
+    import("./svmr-ZZIRWUVA.js").then((p) => {
       p.svmrui([null, inputdiv, gselect, filediv, saydiv, visualdiv], app.genomes, app.hostURL, arg.jwt);
     });
     return;
@@ -2600,17 +2600,17 @@ function launchfusioneditor(arg, app) {
     app.error0("Invalid genome: " + arg.genome);
     return;
   }
-  import("./svmr-TIIMFKG7.js").then((p) => {
+  import("./svmr-ZZIRWUVA.js").then((p) => {
     p.svmrparseinput(arg.fusioneditor, app.error0, genomeobj2, app.holder0, app.hostURL, arg.jwt);
   });
 }
 async function launchSelectGenomeWithTklst(arg, app) {
-  const _ = await import("./selectGenomeWithTklst-5LQGT4Z7.js");
+  const _ = await import("./selectGenomeWithTklst-F5372VC5.js");
   await _.init(arg, app.holder0, app.genomes);
 }
 function launchmavb(arg, app) {
   if (arg.mavolcanoplot.uionly) {
-    import("./mavb-BI4XKI5P.js").then((p) => {
+    import("./mavb-27VSL5LG.js").then((p) => {
       p.mavbui(app.genomes, app.hostURL, arg.jwt, app.holder0, app.sandbox_header);
     });
     return;
@@ -2622,13 +2622,13 @@ function launchmavb(arg, app) {
   }
   arg.mavolcanoplot.hostURL = app.hostURL;
   arg.mavolcanoplot.genome = genomeobj2;
-  import("./mavb-BI4XKI5P.js").then((p) => {
+  import("./mavb-27VSL5LG.js").then((p) => {
     p.mavbparseinput(arg.mavolcanoplot, app.error0, app.holder0, arg.jwt);
   });
 }
 function launch2dmaf(arg, app) {
   if (arg.twodmaf.uionly) {
-    import("./2dmaf-US2ZAJJJ.js").then((p) => {
+    import("./2dmaf-HS37GJYM.js").then((p) => {
       p.d2mafui(app.genomes, app.holder0);
     });
     return;
@@ -2640,20 +2640,20 @@ function launch2dmaf(arg, app) {
   }
   arg.twodmaf.hostURL = app.hostURL;
   arg.twodmaf.genome = genomeobj2;
-  import("./2dmaf-US2ZAJJJ.js").then((d2maf) => {
+  import("./2dmaf-HS37GJYM.js").then((d2maf) => {
     d2maf.d2mafparseinput(arg.twodmaf, app.holder0);
   });
 }
 function launchmaftimeline(arg, app) {
   if (arg.maftimeline.uionly) {
-    import("./maftimeline-GRXGOOSJ.js").then((p) => {
+    import("./maftimeline-Q4YPFSZP.js").then((p) => {
       p.default(app.genomes, app.holder0, app.sandbox_header);
     });
   }
 }
 function launchJunctionbyMatrix(arg, app) {
   if (arg.junctionbymatrix.uionly) {
-    import("./block.tk.junction.textmatrixui-UCWGHZDI.js").then((p) => {
+    import("./block.tk.junction.textmatrixui-XJIUGHAX.js").then((p) => {
       p.default(app.genomes, app.hostURL, arg.jwt, app.holder0);
     });
   }
@@ -2663,7 +2663,7 @@ async function launch_singlecell(arg, app) {
     const genome = app.genomes[arg.genome];
     if (!genome) throw "Invalid genome: " + arg.genome;
     arg.genome = genome;
-    const _ = await import("./singlecell-32SSD7VN.js");
+    const _ = await import("./singlecell-K2SHYDHA.js");
     await _.init(arg, app.holder0);
   } catch (e) {
     app.error0("Error launching single cell viewer: " + e);
@@ -2672,25 +2672,25 @@ async function launch_singlecell(arg, app) {
 }
 async function launch_tkUIs(arg, app) {
   if (arg.tkui == "bigwig") {
-    const p = await import("./block.tk.bigwig.ui-WJPH2Z7F.js");
+    const p = await import("./block.tk.bigwig.ui-SBD6S5SA.js");
     p.bigwigUI(app.genomes, app.holder);
   }
   if (arg.tkui == "databrowser") {
-    const p = await import("./databrowser.ui-VJKNMIXA.js");
+    const p = await import("./databrowser.ui-3BRSJHIW.js");
     p.init_databrowserUI(app.holder, app.debugmode);
   }
   if (arg.tkui == "genefusion") {
-    const p = await import("./genefusion.ui-AAJ37VFA.js");
+    const p = await import("./genefusion.ui-ZJBKC2RH.js");
     p.init_geneFusionUI(app.holder, app.genomes, app.debugmode);
   }
   if (arg.tkui == "disco") {
-    const p = await import("./Disco.UI-VIHYJGYU.js");
+    const p = await import("./Disco.UI-K4RBVRJP.js");
     p.init_discoplotUI(app.holder, app.genomes, app.debugmode);
   }
 }
 async function launchtermdb(opts, app) {
   if (!opts.holder) opts.holder = app.holder0;
-  import("./app-XLYH3YPL.js").then((_) => {
+  import("./app-QIBNB4AA.js").then((_) => {
     _.appInit(opts);
   });
 }
@@ -2706,7 +2706,7 @@ async function launch_genefusion(arg, app) {
     });
     await getGm(m.pairlst[0].a, genome);
     await getGm(m.pairlst[0].b, genome);
-    const _ = await import("./svgraph-SY2HVMYL.js");
+    const _ = await import("./svgraph-TYIBQ3RD.js");
     _.default({
       pairlst: m.pairlst,
       genome,
@@ -2743,7 +2743,7 @@ async function launchmass(arg, app) {
   opts.addLoginCallback = arg.addLoginCallback;
   opts.pkgver = app.pkgver;
   childCorsMessage(opts);
-  const _ = await import("./app-KHZT2BVF.js");
+  const _ = await import("./app-7MRKEE2J.js");
   return await _.appInit(opts);
 }
 function initgenome(g) {
@@ -2801,15 +2801,15 @@ async function launchDisco(arg, app) {
   const genomeObj = app.genomes[arg.genome];
   if (!genomeObj) throw "unknown genome";
   if (arg.disco.sample_id) {
-    const vocabApi = (await import("./vocabulary-WLHYHDX7.js")).vocabInit({
+    const vocabApi = (await import("./vocabulary-6IZJ6F7N.js")).vocabInit({
       state: { genome: genomeObj.name, dslabel: arg.disco.dslabel }
     });
     const termdbConfig = await vocabApi.getTermdbConfig();
     const overrides = { Disco: arg.disco?.settings || {} };
-    await (await import("./plot.disco-5K2SCKJ4.js")).default(termdbConfig, arg.disco.dslabel, { sample_id: arg.disco.sample_id }, app.holder, genomeObj, overrides);
+    await (await import("./plot.disco-I2VLOSAU.js")).default(termdbConfig, arg.disco.dslabel, { sample_id: arg.disco.sample_id }, app.holder, genomeObj, overrides);
     return;
   } else {
-    const _ = await import("./launch.adhoc-Y35FZV6H.js");
+    const _ = await import("./launch.adhoc-VDXES33R.js");
     return await _.launch(arg.disco, genomeObj, app.holder0);
   }
 }
@@ -2817,7 +2817,7 @@ async function launchWsiViewer(arg, app) {
   if (!arg.genome) throw '"genome" parameter missing';
   const genomeObj = app.genomes[arg.genome];
   if (!genomeObj) throw "unknown genome";
-  const wsiViewer = await import("./plot.wsi-MR6JMOXW.js");
+  const wsiViewer = await import("./plot.wsi-Y6FZWHXT.js");
   const urlParams = new URLSearchParams(window.location.search);
   const sampleId = urlParams.get("sample_id");
   if (!sampleId) {
@@ -2830,4 +2830,4 @@ export {
   runproteinpaint,
   bindProteinPaint
 };
-//# sourceMappingURL=chunk-VRLC7DAU.js.map
+//# sourceMappingURL=chunk-J5GTIQTL.js.map

package/dist/{chunk-74XVBQF7.js → chunk-JBI6P3UX.js}

@@ -1,6 +1,6 @@
 import {
   colorinframe
-} from "./chunk-L7VDSIM7.js";
+} from "./chunk-RHGAE6PY.js";
 import {
   IN_frame,
   OUT_frame
@@ -52,4 +52,4 @@ function spliceevent_phrase_default(evt) {
 export {
   spliceevent_phrase_default
 };
-//# sourceMappingURL=chunk-74XVBQF7.js.map
+//# sourceMappingURL=chunk-JBI6P3UX.js.map

package/dist/{chunk-HXNUQOGN.js → chunk-JRDHTECQ.js}

@@ -4,7 +4,7 @@ import {
   filterJoin,
   getFilterItemByTag,
   renderTable
-} from "./chunk-L7VDSIM7.js";
+} from "./chunk-RHGAE6PY.js";
 import {
   SINGLECELL_GENE_EXPRESSION
 } from "./chunk-IVXCWCKS.js";
@@ -231,4 +231,4 @@ function getUpdatedQfromClick(plot, term, isHidden = false) {
 export {
   setInteractivity
 };
-//# sourceMappingURL=chunk-HXNUQOGN.js.map
+//# sourceMappingURL=chunk-JRDHTECQ.js.map

package/dist/{chunk-NJDW6ZQP.js → chunk-JRZZ6GN3.js}

@@ -1,6 +1,6 @@
 import {
   renderTable
-} from "./chunk-L7VDSIM7.js";
+} from "./chunk-RHGAE6PY.js";
 
 // termdb/handlers/termCollection.ts
 var SearchHandler = class {
@@ -99,4 +99,4 @@ var SearchHandler = class {
 export {
   SearchHandler
 };
-//# sourceMappingURL=chunk-NJDW6ZQP.js.map
+//# sourceMappingURL=chunk-JRZZ6GN3.js.map

package/dist/{chunk-55MOHL3P.js → chunk-KXRTPE65.js}

@@ -76,22 +76,22 @@ var NumericHandler = class extends HandlerBase {
     if (!this.handlerByMode[tabData.mode]) {
       switch (tabData.mode) {
         case "continuous": {
-          const { NumContEditor } = await import("./NumContEditor-XS3RA7GY.js");
+          const { NumContEditor } = await import("./NumContEditor-5KEM54CE.js");
           this.handlerByMode.continuous = new NumContEditor(this.opts, this);
           break;
         }
         case "discrete": {
-          const { NumDiscreteEditor } = await import("./NumDiscreteEditor-24W2A5IN.js");
+          const { NumDiscreteEditor } = await import("./NumDiscreteEditor-XT2GSGUR.js");
           this.handlerByMode.discrete = new NumDiscreteEditor(this.opts, this);
           break;
         }
         case "binary": {
-          const { NumBinaryEditor } = await import("./NumBinaryEditor-CHWQT445.js");
+          const { NumBinaryEditor } = await import("./NumBinaryEditor-ICZCNBRL.js");
           this.handlerByMode.binary = new NumBinaryEditor(this.opts, this);
           break;
         }
         case "spline": {
-          const { NumSplineEditor } = await import("./NumSplineEditor-54KNKHJX.js");
+          const { NumSplineEditor } = await import("./NumSplineEditor-QJNRSORC.js");
           this.handlerByMode.spline = new NumSplineEditor(this.opts, this);
           break;
         }
@@ -155,4 +155,4 @@ var NumericHandler = class extends HandlerBase {
 export {
   NumericHandler
 };
-//# sourceMappingURL=chunk-55MOHL3P.js.map
+//# sourceMappingURL=chunk-KXRTPE65.js.map

package/dist/{chunk-SDMOLIEU.js → chunk-L5C3B7PS.js}

@@ -17,7 +17,7 @@ import {
   htmlLegend,
   rgb2hex,
   term0_term2_defaultQ
-} from "./chunk-L7VDSIM7.js";
+} from "./chunk-RHGAE6PY.js";
 import {
   Menu
 } from "./chunk-HYOEWQ5P.js";
@@ -68,6 +68,21 @@ Object.assign(t0_t2_defaultQ, {
     mode: "discrete",
     type: "custom-bin",
     preferredBins: "median"
+  },
+  ssGSEA: {
+    mode: "discrete",
+    type: "custom-bin",
+    preferredBins: "median"
+  },
+  isoformExpression: {
+    mode: "discrete",
+    type: "custom-bin",
+    preferredBins: "median"
+  },
+  dnaMethylation: {
+    mode: "discrete",
+    type: "custom-bin",
+    preferredBins: "median"
   }
 });
 var TdbSurvival = class _TdbSurvival extends PlotBase {
@@ -1202,4 +1217,4 @@ export {
   componentInit,
   getPlotConfig
 };
-//# sourceMappingURL=chunk-SDMOLIEU.js.map
+//# sourceMappingURL=chunk-L5C3B7PS.js.map