@sjcrh/proteinpaint-client 2.191.0 → 2.191.2

package/dist/chunk-SQWEREGE.js

@@ -0,0 +1,222 @@
+import {
+  appInit
+} from "./chunk-NVX26LFC.js";
+import {
+  getDefaultViolinSettings
+} from "./chunk-DC4KD6FJ.js";
+import {
+  select_default
+} from "./chunk-I6Y4O3RR.js";
+
+// plots/regression.inputs.values.table.js
+var row_hover_bgcolor = "#fff6dc";
+var InputValuesTable = class {
+  constructor(opts) {
+    this.opts = opts;
+    this.input = opts.input;
+    setRenderers(this);
+    this.setDOM(opts.holder);
+  }
+  main() {
+    try {
+      const term = this.input.term;
+      if (!term || !this.input.termStatus) {
+        this.dom.holder.style("display", "none");
+        this.dom.loading_div.style("display", "none");
+        return;
+      } else if (term) {
+        this.dom.holder.style("display", "block");
+        this.dom.loading_div.style("display", "block");
+        this.updateValueCount();
+        this.dom.loading_div.style("display", "none");
+        this.render();
+        return;
+      }
+    } catch (e) {
+      this.dom.loading_div.style("display", "none");
+      throw e;
+    }
+  }
+  updateValueCount() {
+    const i = this.input;
+    try {
+      if (i.pill && i.pill.validateQ) {
+        i.pill.validateQ({
+          term: i.term.term,
+          q: i.term.q,
+          sampleCounts: i.termStatus.sampleCounts
+        });
+      }
+    } catch (e) {
+      i.term.error = e;
+    }
+  }
+};
+function setRenderers(self) {
+  self.setDOM = (holder) => {
+    self.dom = {
+      holder: holder.style("margin", "10px").style("font-size", ".8em").style("text-align", "left").style("color", "#999"),
+      loading_div: holder.append("div").text("Loading..").style("display", "none"),
+      top_info_div: holder.append("div").style("padding-bottom", "5px"),
+      violin_div: holder.append("div").style("color", "black").style("padding-top", "5px"),
+      table_div: holder.append("table").style("margin", "5px 0px 15px 0px").style("border-collapse", "collapse").style("color", "black"),
+      bottom_info_div: holder.append("div"),
+      excluded_div: holder.append("table").style("display", "none").style("margin", "5px 10px").style("border-collapse", "collapse")
+    };
+  };
+  self.render = async () => {
+    const input = self.input;
+    renderTopInfo(input);
+    await renderValuesTable(input);
+    renderBottomInfo(input);
+    renderExcludedValues(input);
+  };
+  function renderTopInfo(input) {
+    if (input.termStatus.topInfoStatus?.length) {
+      self.dom.top_info_div.style("display", "block").html(input.termStatus.topInfoStatus.join("<br>"));
+    } else {
+      self.dom.top_info_div.style("display", "none");
+    }
+  }
+  async function renderValuesTable(input) {
+    if (input.term.q.mode == "continuous" || input.term.q.mode == "spline") {
+      self.dom.violin_div.style("display", "block");
+      self.dom.table_div.style("display", "none");
+      if (self.plotAppApi) {
+        const action = {
+          type: "app_refresh",
+          state: { termfilter: structuredClone(self.input.parent.state?.termfilter) },
+          subactions: [
+            {
+              type: "plot_edit",
+              id: self.violinApi.id,
+              config: {
+                term: input.term
+              }
+            }
+          ]
+        };
+        self.plotAppApi.dispatch(action);
+      } else {
+        const opts = {
+          holder: self.dom.violin_div,
+          vocabApi: self.input.parent.app.vocabApi,
+          state: {
+            vocab: {
+              genome: self.input.parent.app.vocabApi.genome,
+              dslabel: self.input.parent.app.vocabApi.dslabel
+            },
+            termfilter: structuredClone(self.input.parent.state?.termfilter),
+            plots: [
+              {
+                chartType: "violin",
+                term: input.term,
+                settings: {
+                  violin: getDefaultViolinSettings(null, {
+                    svgw: 350,
+                    axisHeight: 25,
+                    rightMargin: 10,
+                    datasymbol: "rug",
+                    radius: 8,
+                    plotThickness: 80
+                  })
+                }
+              }
+            ]
+          },
+          // global options for plotAppApi
+          // opts.violin will apply to all violin plots within the plotApp
+          // rx will pass options by component type, which are not tracked in state
+          // examples are callbacks, event listeners, etc
+          violin: {
+            mode: "minimal"
+          }
+        };
+        self.plotAppApi = await appInit(opts);
+        const plotId = self.plotAppApi.getState().plots[0].id;
+        self.violinApi = self.plotAppApi.getComponents(`plots.${plotId}`);
+      }
+    } else {
+      self.dom.violin_div.style("display", "none");
+      const data = input.termStatus.sampleCounts;
+      if (!data || !data.length) {
+        self.dom.table_div.style("display", "none");
+        return;
+      }
+      self.dom.table_div.style("display", "block");
+      const l = self.input.orderedLabels;
+      const sortFxn = l && l.length ? (a, b) => l.indexOf(a.label) - l.indexOf(b.label) : (a, b) => b.samplecount - a.samplecount;
+      const tr_data = data.sort(sortFxn);
+      const maxCount = Math.max(...tr_data.map((v) => v.samplecount), 0);
+      tr_data.forEach((v) => v.bar_width_frac = Number((1 - (maxCount - v.samplecount) / maxCount).toFixed(4)));
+      self.dom.table_div.selectAll("tr").remove();
+      const trs = self.dom.table_div.selectAll("tr").data(tr_data, (b) => b.key);
+      trs.enter().append("tr").each(trEnter);
+    }
+  }
+  function renderBottomInfo(input) {
+    if (input.termStatus.bottomSummaryStatus) {
+      self.dom.bottom_info_div.style("display", "block").html(input.termStatus.bottomSummaryStatus);
+    } else {
+      self.dom.bottom_info_div.style("display", "none");
+    }
+  }
+  function renderExcludedValues(input) {
+    const data = input.termStatus.excludeCounts;
+    if (!data || !data.length) {
+      self.dom.excluded_div.style("display", "none");
+      return;
+    }
+    self.dom.excluded_div.style("display", "block").selectAll("tr").remove();
+    const trs = self.dom.excluded_div.selectAll("tr").data(data, (b) => b.key);
+    trs.enter().append("tr").each(trEnter);
+    self.dom.excluded_div.selectAll("td").style("color", "#999");
+  }
+  function trEnter(item) {
+    const tr = select_default(this);
+    const input = this.parentNode.__data__;
+    const t = input.term;
+    const maxBarWidth = 150;
+    tr.style("text-align", "left").style("cursor", input.termStatus.allowToSelectRefGrp ? "pointer" : "default");
+    const tdSpacing = "1px 10px 1px 0px";
+    tr.append("td").style("padding", tdSpacing).style("text-align", "left").style("color", "black").text(item.samplecount !== void 0 ? "n=" + item.samplecount : "");
+    tr.append("td").style("padding", tdSpacing).style("text-align", "left").style("color", "black").text(item.label);
+    const bar_td = tr.append("td").style("padding", tdSpacing);
+    const barWidth = maxBarWidth * item.bar_width_frac;
+    bar_td.append("div").style("margin", tdSpacing).style("width", barWidth + "px").style("height", "15px").style("background-color", "#ddd");
+    addTrBehavior({ input, item, tr, rendered: false });
+  }
+  function addTrBehavior({ input, item, tr, rendered }) {
+    if (!item.bar_width_frac) return;
+    const t = input.term;
+    const hover_flag = input.termStatus.allowToSelectRefGrp;
+    let ref_text;
+    if (rendered) {
+      tr.style("background", "white");
+      ref_text = select_default(tr.node().lastChild).select("div").style("display", item.key === t.refGrp && hover_flag ? "inline-block" : "none").style("border", item.key === t.refGrp && hover_flag ? "1px solid #bbb" : "");
+    } else if (input.term.q.mode != "cutoff") {
+      const reference_td = tr.append("td").style("padding", "1px 5px").style("text-align", "left");
+      ref_text = reference_td.append("div").style("display", item.key === t.refGrp && hover_flag ? "inline-block" : "none").style("padding", "2px 10px").style("border", item.key === t.refGrp && hover_flag ? "1px solid #bbb" : "").style("border-radius", "10px").style("color", "#999").style("font-size", ".7em").text("REFERENCE");
+      if (hover_flag) {
+        tr.on("mouseover", () => {
+          if (t.refGrp !== item.key) {
+            tr.style("background", row_hover_bgcolor);
+            ref_text.style("display", "inline-block").style("border", "").text("Set as reference");
+          } else tr.style("background", "white");
+        }).on("mouseout", () => {
+          tr.style("background", "white");
+          if (t.refGrp !== item.key) ref_text.style("display", "none");
+        }).on("click", () => {
+          t.refGrp = item.key;
+          ref_text.style("border", "1px solid #bbb").text("REFERENCE");
+          self.opts.callback(t);
+        });
+      }
+    }
+  }
+}
+
+export {
+  InputValuesTable
+};
+//# sourceMappingURL=chunk-SQWEREGE.js.map

package/dist/chunk-UCLROZRF.js

@@ -0,0 +1,142 @@
+import {
+  runproteinpaint
+} from "./chunk-YNBT4N6T.js";
+
+// test/front.helpers.js
+var serverData = /* @__PURE__ */ Object.create(null);
+function getRunPp(appname = "", defaultArgs = {}, _host = "http://localhost:3000") {
+  const host = window.testHost || _host;
+  const arg = {
+    host: window.testHost || _host,
+    noheader: 1,
+    nobox: true,
+    debug: 1,
+    norecover: true
+  };
+  if (appname == "mass" || appname == "termdb") {
+    defaultArgs.debounceInterval = 0;
+  }
+  if (appname) arg[appname] = defaultArgs;
+  else copyMerge(arg, defaultArgs);
+  const argStr = JSON.stringify(arg);
+  return function runpp(overrides = {}) {
+    const argCopy = JSON.parse(argStr);
+    if (appname) copyMerge(argCopy[appname], overrides);
+    else copyMerge(argCopy, overrides);
+    if (appname && defaultArgs.fetchOpts) {
+      argCopy[appname].fetchOpts = defaultArgs.fetchOpts;
+    }
+    return runproteinpaint(Object.assign(argCopy, { serverData }));
+  };
+}
+function copyMerge(base, ...args) {
+  const target = typeof base == "string" ? JSON.parse(base) : base;
+  for (const arg of args) {
+    if (arg) {
+      const source = typeof base == "string" ? JSON.parse(JSON.stringify(arg)) : arg;
+      for (const key in source) {
+        if (!target[key] || Array.isArray(target[key]) || typeof target[key] !== "object") target[key] = source[key];
+        else copyMerge(target[key], source[key]);
+      }
+    }
+  }
+  return target;
+}
+function rideInit(opts = {}) {
+  const self = new Ride(opts);
+  const rideApi = {
+    // ride on the default event bus
+    to(callback, sub = {}) {
+      self.addToThen(callback, Object.assign({}, opts, sub));
+      return rideApi;
+    },
+    use(triggerFxn, sub = {}) {
+      self.addUseThen(triggerFxn, Object.assign({}, opts, sub));
+      return rideApi;
+    },
+    change(sub = {}) {
+      Object.assign(opts, sub);
+      return rideApi;
+    },
+    // run callback without using bus, with or without timeout
+    run(callback, after = 0) {
+      self.addRunThen(callback, after, opts);
+      return rideApi;
+    },
+    // close the event bus
+    done(test) {
+      if (opts.bus) self.resolved.then(() => opts.bus.on(opts.eventType, null));
+      self.resolved.then(() => {
+        test.end();
+        if (!opts.preserve && test._ok && opts.arg.Inner.app && typeof opts.arg.Inner.app.destroy == "function") {
+          opts.arg.Inner.app.destroy();
+        }
+      }).catch(console.log);
+      return rideApi;
+    }
+  };
+  return Object.freeze(rideApi);
+}
+var Ride = class {
+  // mutable but private access props and methods
+  // when used inside rideInit()
+  constructor(opts) {
+    this.validateOpts(opts);
+    this.resolved = Promise.resolve();
+  }
+  validateOpts(opts) {
+    try {
+      if (opts.eventType && !opts.bus) {
+        if (!opts.arg) throw "must specify opts.bus or opts.arg for rideInit() argument";
+        opts.bus = opts.arg;
+      }
+      if (opts.bus) {
+        if (typeof opts.eventType !== "string") throw "invalid default.eventType";
+        opts.bus.on(opts.eventType, null);
+        return opts;
+      }
+    } catch (e) {
+      console.log(e);
+    }
+  }
+  addToThen(callback, opts) {
+    this.resolved = this.resolved.then(async (triggerFxn) => {
+      opts.bus.on(opts.eventType, null);
+      return new Promise(async (resolve, reject) => {
+        opts.bus.on(opts.eventType, async () => {
+          await sleep(opts.wait);
+          callback(opts.arg);
+          resolve();
+        });
+        if (triggerFxn) await triggerFxn();
+      });
+    });
+  }
+  // prepare a trigger function for use in the pattern
+  // rideInit().use(triggerFxn).to(...)
+  //
+  // .use() enables setting a different opts.arg to be used for triggerFxn
+  //
+  addUseThen(triggerFxn, opts) {
+    this.resolved = this.resolved.then(async (prevTriggerFxn) => {
+      if (typeof prevTriggerFxn == "function") await prevTriggerFxn();
+      await sleep(isNaN(opts.wait) ? 0 : opts.wait);
+      return () => triggerFxn(opts.arg);
+    });
+  }
+  addRunThen(callback, after, opts) {
+    this.resolved = this.resolved.then(async () => {
+      await sleep(typeof after == "number" ? after : 0);
+      callback(opts.arg);
+    });
+  }
+};
+function sleep(ms) {
+  return new Promise((resolve) => setTimeout(resolve, ms));
+}
+
+export {
+  getRunPp,
+  rideInit
+};
+//# sourceMappingURL=chunk-UCLROZRF.js.map

package/dist/chunk-VIHUKORE.js

@@ -0,0 +1,216 @@
+import {
+  make_radios
+} from "./chunk-L4TUTGTA.js";
+import {
+  initBinConfig
+} from "./chunk-6VKTEMFV.js";
+import {
+  format
+} from "./chunk-OAWQ6LOO.js";
+
+// termsetting/handlers/NumRegularBinEditor.ts
+var NumRegularBinEditor = class {
+  constructor(editHandler) {
+    this.dom = {};
+    this.editHandler = editHandler;
+    this.opts = editHandler.opts;
+    this.tw = editHandler.tw;
+    this.termsetting = editHandler.termsetting;
+  }
+  render(div) {
+    this.tw = this.editHandler.tw;
+    this.q = this.getDefaultQ();
+    this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
+    if (this.dom.binsTable) {
+      if (this.editHandler.dom.binsDiv?.node().contains(this.dom.binsTable.node())) return;
+      else {
+        this.dom.binsTable.remove();
+        delete this.dom.binsTable;
+      }
+    }
+    const binsTable = div.append("table");
+    this.dom.binsTable = binsTable;
+    this.renderBinSizeInput(binsTable.append("tr"));
+    this.renderFirstBinInput(binsTable.append("tr"));
+    this.renderLastBinInputs(binsTable.append("tr"));
+  }
+  getDefaultQ() {
+    if (this.tw.q.type == "regular-bin") return JSON.parse(JSON.stringify(this.tw.q));
+    const t = this.tw.term;
+    const defaultQ = this.termsetting.opts.use_bins_less && t.bins?.less || t.bins?.default;
+    if (defaultQ) return JSON.parse(JSON.stringify(defaultQ));
+    const binConfig = initBinConfig(this.editHandler.handler.density_data);
+    return typeof binConfig == "string" ? JSON.parse(binConfig) : binConfig;
+  }
+  renderBinSizeInput(tr) {
+    const handler = this.editHandler.handler;
+    tr.append("td").style("margin", "5px").style("opacity", 0.5).text("Bin Size");
+    const { min, max } = handler.density_data;
+    const q = this.q;
+    const origBinSize = q.bin_size;
+    this.dom.bin_size_input = tr.append("td").append("input").attr("type", "number").attr("value", "rounding" in q ? format(q.rounding || ".0f")(q.bin_size) : q.bin_size).attr("data-testid", "sjpp-num-reg-bin-editor-size").style("margin-left", "15px").style("width", "100px").style("color", () => q.bin_size > Math.abs(max - min) ? "red" : "").on("change", (event) => {
+      const newValue = Number(event.target.value);
+      if (newValue <= 0) {
+        window.alert("Please enter non-negative bin size.");
+        event.target.value = origBinSize;
+        return;
+      }
+      if ((max - min) / newValue > 100) {
+        window.alert("Bin size too small. Try setting a bigger value.");
+        event.target.value = origBinSize;
+        return;
+      }
+      q.bin_size = newValue;
+      this.dom.bin_size_input.style("color", q.bin_size > max - min ? "red" : newValue != origBinSize ? "green" : "");
+      handler.density.setBinLines(this.getBoundaryOpts());
+    });
+  }
+  renderFirstBinInput(tr) {
+    const handler = this.editHandler.handler;
+    const q = this.q;
+    if (!q.first_bin) throw "missing q.first_bin";
+    tr.append("td").style("margin", "5px").style("opacity", 0.5).text("First Bin Stop");
+    const { min, max } = handler.density_data;
+    const origValue = q.first_bin.stop;
+    this.dom.first_stop_input = tr.append("td").append("input").attr("type", "number").property("value", origValue).style("width", "100px").style("margin-left", "15px").on("change", (event) => {
+      const newValue = Number(event.target.value);
+      if (newValue < min || newValue > max) {
+        window.alert("First bin stop value out of bound.");
+        event.target.value = origValue;
+        return;
+      }
+      this.q.first_bin.stop = newValue;
+      handler.density.setBinLines(this.getBoundaryOpts());
+    });
+    tr.append("td").append("div").style("font-size", ".6em").style("opacity", 0.5).style("display", handler.density.no_density_data ? "none" : "block").text("Indicated by left-most red line. Drag to change.");
+  }
+  renderLastBinInputs(tr) {
+    const handler = this.editHandler.handler;
+    const q = this.q;
+    const isAuto = !q.last_bin || !Number.isFinite(q.last_bin.start);
+    tr.append("td").style("padding-top", "4px").style("opacity", 0.5).style("vertical-align", "top").text("Last Bin Start");
+    const td1 = tr.append("td").style("padding-left", "15px").style("vertical-align", "top");
+    const radio_div = td1.append("div");
+    const radios = make_radios({
+      holder: radio_div,
+      options: [
+        { label: "Automatic", value: "auto", checked: isAuto },
+        { label: "Fixed", value: "fixed", checked: !isAuto }
+      ],
+      callback: (v) => {
+        if (v == "auto") {
+          delete q.last_bin;
+          edit_div.style("display", "none");
+          handler.density.setBinLines(this.getBoundaryOpts());
+          return;
+        }
+        edit_div.style("display", "inline-block");
+        if (this.dom.last_start_input.property("value") == "") {
+          this.dom.last_start_input.property("value", this.tw.q.last_bin?.start || handler.density_data.max);
+        }
+        this.setLastBinStart();
+      }
+    });
+    this.dom.fixed_radio = radios.inputs.filter((_, i) => i === 1);
+    const edit_div = tr.append("td").append("div").style("display", isAuto ? "none" : "inline-block");
+    this.dom.last_start_input = edit_div.append("input").attr("type", "number").property("value", q.last_bin?.start || "").style("width", "100px").on("change", () => this.setLastBinStart());
+    edit_div.append("div").style("font-size", ".6em").style("opacity", 0.5).style("display", handler.density.no_density_data ? "none" : "block").text("Indicated by right-most red line. Drag to change.");
+  }
+  setLastBinStart() {
+    const q = this.q;
+    const { max } = this.editHandler.handler.density_data;
+    const strInput = this.dom.last_start_input.property("value");
+    if (strInput === "") return;
+    const inputValue = Number(strInput);
+    if (q.first_bin && inputValue <= q.first_bin.stop) {
+      window.alert("Last bin start cannot be smaller than first bin stop.");
+      this.dom.last_start_input.property("value", max);
+      return;
+    }
+    if (inputValue > max) {
+      window.alert("Last bin start value out of bound.");
+      this.dom.last_start_input.property("value", max);
+      return;
+    }
+    if (q.last_bin) q.last_bin.start = inputValue;
+    else
+      q.last_bin = {
+        start: inputValue,
+        stopunbounded: true,
+        stopinclusive: false
+      };
+    this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
+  }
+  getBoundaryOpts() {
+    const { min, max } = this.editHandler.handler.density_data;
+    const binLinesStop = this.q.last_bin?.start ?? max + Math.abs(this.q.first_bin.stop) - Math.min(min, 0);
+    const boundaryValues = [];
+    for (let i = this.q.first_bin.stop; i <= binLinesStop; i = i + this.q.bin_size) {
+      if (this.q.last_bin?.start === i) break;
+      if (i > binLinesStop) boundaryValues[boundaryValues.length - 1].isLastVisibleLine = true;
+      const isDraggable = i === this.q.first_bin.stop || i === this.q.bin_size - 1;
+      boundaryValues.push({ x: i, isDraggable, movesWithLineIndex: !isDraggable ? 0 : -1 });
+    }
+    if (this.q.last_bin) {
+      boundaryValues.push({
+        x: this.q.last_bin.start,
+        isDraggable: true,
+        isLastVisibleLine: true,
+        movesWithLineIndex: -1
+      });
+    }
+    return {
+      values: boundaryValues,
+      callback: (d, value) => {
+        if (d.index === 0) {
+          this.dom.first_stop_input.property("value", value);
+          this.q.first_bin.stop = value;
+        } else {
+          this.editHandler.handler.dom.last_start_input.property("value", value);
+          if (this.q.last_bin) this.q.last_bin.start = value;
+        }
+      }
+    };
+  }
+  getEditedQ(destroyDom = true) {
+    const bin_size = this.dom.bin_size_input.property("value");
+    const config = {
+      mode: "discrete",
+      type: "regular-bin",
+      startinclusive: this.editHandler.boundaryInclusion == "startinclusive",
+      stopinclusive: this.editHandler.boundaryInclusion == "stopinclusive",
+      bin_size: Number(bin_size),
+      first_bin: {
+        startunbounded: true,
+        stop: Number(this.dom.first_stop_input.property("value"))
+      },
+      rounding: bin_size.includes(".") && !bin_size.endsWith(".") ? `.${bin_size.split(".")[1].length}f` : ".0f"
+    };
+    if (this.dom.fixed_radio.property("checked")) {
+      config.last_bin = {
+        start: Number(this.dom.last_start_input.property("value")),
+        stopunbounded: true
+      };
+    }
+    if (destroyDom) {
+      for (const name of Object.keys(this.dom)) {
+        this.dom[name].remove();
+        delete this.dom[name];
+      }
+    }
+    return config;
+  }
+  undoEdits() {
+    this.q = this.getDefaultQ();
+    this.dom.binsTable.selectAll("*").remove();
+    this.renderBinSizeInput(this.dom.binsTable.append("tr"));
+    this.renderFirstBinInput(this.dom.binsTable.append("tr"));
+    this.renderLastBinInputs(this.dom.binsTable.append("tr"));
+    this.editHandler.handler.density.setBinLines(this.getBoundaryOpts());
+  }
+};
+
+export {
+  NumRegularBinEditor
+};
+//# sourceMappingURL=chunk-VIHUKORE.js.map

package/dist/chunk-VIHUKORE.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../termsetting/handlers/NumRegularBinEditor.ts"],
+  "sourcesContent": ["import { format } from 'd3-format'\n//import { setDensityPlot } from './density'\nimport { make_radios } from '#dom'\nimport initBinConfig from '#shared/termdb.initbinconfig.js'\nimport type { NumRegularBin } from '#tw'\nimport type { NumDiscreteEditor } from './NumDiscreteEditor.ts'\nimport type { BoundaryOpts, BoundaryValue, DraggedLineData } from './NumericDensity.ts'\nimport type { TermSetting } from '../TermSetting.ts'\nimport type { RegularNumericBinConfig } from '#types'\n\n// This is a bin editor for NumDiscreteEditor\n// NumericHandler (handler) -> NumDiscreteEditor (editor) -> NumRegularBinEditor (bin editor)\nexport class NumRegularBinEditor {\n\ttw: NumRegularBin\n\tq!: RegularNumericBinConfig\n\teditHandler: NumDiscreteEditor\n\ttermsetting: TermSetting\n\topts: any\n\tdom: {\n\t\t[elemName: string]: any\n\t} = {}\n\n\tconstructor(editHandler) {\n\t\tthis.editHandler = editHandler\n\t\tthis.opts = editHandler.opts\n\t\tthis.tw = editHandler.tw\n\t\tthis.termsetting = editHandler.termsetting\n\t}\n\n\trender(div) {\n\t\tthis.tw = this.editHandler.tw as NumRegularBin\n\t\tthis.q = this.getDefaultQ()\n\t\tthis.editHandler.handler.density.setBinLines(this.getBoundaryOpts())\n\t\tif (this.dom.binsTable) {\n\t\t\tif (this.editHandler.dom.binsDiv?.node().contains(this.dom.binsTable.node())) return\n\t\t\telse {\n\t\t\t\tthis.dom.binsTable.remove()\n\t\t\t\tdelete this.dom.binsTable\n\t\t\t}\n\t\t}\n\t\tconst binsTable = div.append('table')\n\t\tthis.dom.binsTable = binsTable\n\t\tthis.renderBinSizeInput(binsTable.append('tr'))\n\t\tthis.renderFirstBinInput(binsTable.append('tr'))\n\t\tthis.renderLastBinInputs(binsTable.append('tr'))\n\t}\n\n\tgetDefaultQ(): RegularNumericBinConfig {\n\t\tif (this.tw.q.type == 'regular-bin') return JSON.parse(JSON.stringify(this.tw.q))\n\t\tconst t = this.tw.term\n\t\tconst defaultQ = (this.termsetting.opts.use_bins_less && t.bins?.less) || t.bins?.default\n\t\tif (defaultQ) return JSON.parse(JSON.stringify(defaultQ))\n\t\tconst binConfig = initBinConfig(this.editHandler.handler.density_data)\n\t\treturn typeof binConfig == 'string' ? JSON.parse(binConfig) : binConfig\n\t}\n\n\trenderBinSizeInput(tr: any) {\n\t\tconst handler = this.editHandler.handler\n\t\ttr.append('td').style('margin', '5px').style('opacity', 0.5).text('Bin Size')\n\n\t\tconst { min, max } = handler.density_data\n\t\tconst q = this.q\n\t\tconst origBinSize = q.bin_size\n\n\t\tthis.dom.bin_size_input = tr\n\t\t\t.append('td')\n\t\t\t.append('input')\n\t\t\t.attr('type', 'number')\n\t\t\t.attr('value', 'rounding' in q ? format(q.rounding || '.0f')(q.bin_size) : q.bin_size)\n\t\t\t.attr('data-testid', 'sjpp-num-reg-bin-editor-size')\n\t\t\t.style('margin-left', '15px')\n\t\t\t.style('width', '100px')\n\t\t\t.style('color', () => (q.bin_size > Math.abs(max - min) ? 'red' : ''))\n\t\t\t.on('change', event => {\n\t\t\t\tconst newValue = Number(event.target.value)\n\t\t\t\t// must validate input value\n\t\t\t\tif (newValue <= 0) {\n\t\t\t\t\twindow.alert('Please enter non-negative bin size.')\n\t\t\t\t\t// must reset value in <input>, otherwise the wrong value will be recorded in self.q upon clicking Submit\n\t\t\t\t\tevent.target.value = origBinSize\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\tif ((max - min) / newValue > 100) {\n\t\t\t\t\t// avoid rendering too many svg lines and lock up browser\n\t\t\t\t\twindow.alert('Bin size too small. Try setting a bigger value.')\n\t\t\t\t\tevent.target.value = origBinSize\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\tq.bin_size = newValue\n\t\t\t\tthis.dom.bin_size_input.style('color', q.bin_size > max - min ? 'red' : newValue != origBinSize ? 'green' : '')\n\t\t\t\thandler.density.setBinLines(this.getBoundaryOpts())\n\t\t\t})\n\t}\n\n\trenderFirstBinInput(tr: any) {\n\t\tconst handler = this.editHandler.handler\n\t\tconst q = this.q\n\t\tif (!q.first_bin) throw 'missing q.first_bin'\n\n\t\ttr.append('td').style('margin', '5px').style('opacity', 0.5).text('First Bin Stop')\n\n\t\tconst { min, max } = handler.density_data\n\t\tconst origValue = q.first_bin.stop\n\n\t\tthis.dom.first_stop_input = tr\n\t\t\t.append('td')\n\t\t\t.append('input')\n\t\t\t.attr('type', 'number')\n\t\t\t.property('value', origValue)\n\t\t\t.style('width', '100px')\n\t\t\t.style('margin-left', '15px')\n\t\t\t.on('change', event => {\n\t\t\t\tconst newValue = Number(event.target.value)\n\t\t\t\tif (newValue < min || newValue > max) {\n\t\t\t\t\twindow.alert('First bin stop value out of bound.')\n\t\t\t\t\tevent.target.value = origValue\n\t\t\t\t\treturn\n\t\t\t\t}\n\n\t\t\t\t// first_bin should have already been set; adding the check just to skip the tsc error...\n\t\t\t\tthis.q.first_bin.stop = newValue\n\t\t\t\thandler.density.setBinLines(this.getBoundaryOpts())\n\t\t\t})\n\n\t\ttr.append('td')\n\t\t\t.append('div')\n\t\t\t.style('font-size', '.6em')\n\t\t\t.style('opacity', 0.5)\n\t\t\t.style('display', handler.density.no_density_data ? 'none' : 'block')\n\t\t\t.text('Indicated by left-most red line. Drag to change.')\n\t}\n\n\trenderLastBinInputs(tr) {\n\t\tconst handler = this.editHandler.handler\n\t\tconst q = this.q\n\t\t// tell if last bin is automatic (not fixed)\n\t\tconst isAuto = !q.last_bin || !Number.isFinite(q.last_bin.start)\n\n\t\ttr.append('td')\n\t\t\t.style('padding-top', '4px')\n\t\t\t.style('opacity', 0.5)\n\t\t\t.style('vertical-align', 'top')\n\t\t\t.text('Last Bin Start')\n\n\t\tconst td1 = tr.append('td').style('padding-left', '15px').style('vertical-align', 'top')\n\t\tconst radio_div = td1.append('div')\n\n\t\tconst radios = make_radios({\n\t\t\tholder: radio_div,\n\t\t\toptions: [\n\t\t\t\t{ label: 'Automatic', value: 'auto', checked: isAuto },\n\t\t\t\t{ label: 'Fixed', value: 'fixed', checked: !isAuto }\n\t\t\t],\n\t\t\tcallback: v => {\n\t\t\t\tif (v == 'auto') {\n\t\t\t\t\tdelete q.last_bin\n\t\t\t\t\t// if just deleting last_bin.start and keeps q.last_bin{}, density plot may set last_bin.bin='last' and will break bin validation\n\t\t\t\t\tedit_div.style('display', 'none')\n\t\t\t\t\thandler.density.setBinLines(this.getBoundaryOpts())\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\t// v is \"fixed\", to assign a number to self.q.last_bin.start\n\t\t\t\tedit_div.style('display', 'inline-block')\n\t\t\t\tif (this.dom.last_start_input.property('value') == '') {\n\t\t\t\t\t// blank input, fill max\n\t\t\t\t\tthis.dom.last_start_input.property('value', this.tw.q.last_bin?.start || handler.density_data.max)\n\t\t\t\t}\n\t\t\t\tthis.setLastBinStart()\n\t\t\t}\n\t\t})\n\n\t\tthis.dom.fixed_radio = radios.inputs.filter((_, i) => i === 1)\n\n\t\tconst edit_div = tr\n\t\t\t.append('td')\n\t\t\t.append('div')\n\t\t\t.style('display', isAuto ? 'none' : 'inline-block')\n\n\t\tthis.dom.last_start_input = edit_div\n\t\t\t.append('input')\n\t\t\t.attr('type', 'number')\n\t\t\t.property('value', q.last_bin?.start || '')\n\t\t\t.style('width', '100px')\n\t\t\t.on('change', () => this.setLastBinStart())\n\n\t\tedit_div\n\t\t\t.append('div')\n\t\t\t.style('font-size', '.6em')\n\t\t\t.style('opacity', 0.5)\n\t\t\t.style('display', handler.density.no_density_data ? 'none' : 'block')\n\t\t\t.text('Indicated by right-most red line. Drag to change.')\n\t}\n\n\tsetLastBinStart() {\n\t\tconst q = this.q\n\t\tconst { max } = this.editHandler.handler.density_data\n\t\t// only get value from <input>\n\t\tconst strInput = this.dom.last_start_input.property('value')\n\t\tif (strInput === '') return\n\t\tconst inputValue = Number(strInput)\n\n\t\t// TODO first_bin should be required\n\t\tif (q.first_bin && inputValue <= q.first_bin.stop) {\n\t\t\twindow.alert('Last bin start cannot be smaller than first bin stop.')\n\t\t\tthis.dom.last_start_input.property('value', max)\n\t\t\treturn\n\t\t}\n\t\tif (inputValue > max) {\n\t\t\twindow.alert('Last bin start value out of bound.')\n\t\t\tthis.dom.last_start_input.property('value', max)\n\t\t\treturn\n\t\t}\n\t\tif (q.last_bin) q.last_bin.start = inputValue\n\t\telse\n\t\t\tq.last_bin = {\n\t\t\t\tstart: inputValue,\n\t\t\t\tstopunbounded: true,\n\t\t\t\tstopinclusive: false\n\t\t\t}\n\n\t\tthis.editHandler.handler.density.setBinLines(this.getBoundaryOpts())\n\t}\n\n\tgetBoundaryOpts(): BoundaryOpts {\n\t\tconst { min, max } = this.editHandler.handler.density_data\n\t\tconst binLinesStop = this.q.last_bin?.start ?? max + Math.abs(this.q.first_bin.stop) - Math.min(min, 0)\n\t\tconst boundaryValues: BoundaryValue[] = []\n\t\tfor (let i = this.q.first_bin.stop; i <= binLinesStop; i = i + this.q.bin_size) {\n\t\t\tif (this.q.last_bin?.start === i) break\n\t\t\tif (i > binLinesStop) boundaryValues[boundaryValues.length - 1].isLastVisibleLine = true\n\t\t\tconst isDraggable = i === this.q.first_bin.stop || i === this.q.bin_size - 1\n\t\t\t// non-draggable lines should move with the first bin boundary line\n\t\t\tboundaryValues.push({ x: i, isDraggable, movesWithLineIndex: !isDraggable ? 0 : -1 })\n\t\t}\n\t\tif (this.q.last_bin) {\n\t\t\tboundaryValues.push({\n\t\t\t\tx: this.q.last_bin.start,\n\t\t\t\tisDraggable: true,\n\t\t\t\tisLastVisibleLine: true,\n\t\t\t\tmovesWithLineIndex: -1\n\t\t\t})\n\t\t}\n\n\t\treturn {\n\t\t\tvalues: boundaryValues,\n\t\t\tcallback: (d: DraggedLineData, value) => {\n\t\t\t\t//d.scaledX = Math.round(xscale(value))\n\t\t\t\tif (d.index === 0) {\n\t\t\t\t\tthis.dom.first_stop_input.property('value', value)\n\t\t\t\t\tthis.q.first_bin.stop = value as number\n\t\t\t\t} else {\n\t\t\t\t\tthis.editHandler.handler.dom.last_start_input.property('value', value)\n\t\t\t\t\t//if (!this.q.last_bin) this.q.last_bin = {}\n\t\t\t\t\tif (this.q.last_bin) this.q.last_bin.start = value\n\t\t\t\t\t//middleLines.style('display', (c: any) => (d.draggedX && c.scaledX >= d.draggedX ? 'none' : ''))\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\t}\n\n\tgetEditedQ(destroyDom = true): RegularNumericBinConfig {\n\t\tconst bin_size = this.dom.bin_size_input.property('value')\n\t\tconst config: RegularNumericBinConfig = {\n\t\t\tmode: 'discrete',\n\t\t\ttype: 'regular-bin',\n\t\t\tstartinclusive: this.editHandler.boundaryInclusion == 'startinclusive',\n\t\t\tstopinclusive: this.editHandler.boundaryInclusion == 'stopinclusive',\n\t\t\tbin_size: Number(bin_size),\n\t\t\tfirst_bin: {\n\t\t\t\tstartunbounded: true,\n\t\t\t\tstop: Number(this.dom.first_stop_input.property('value'))\n\t\t\t},\n\t\t\trounding: bin_size.includes('.') && !bin_size.endsWith('.') ? `.${bin_size.split('.')[1].length}f` : '.0f'\n\t\t}\n\n\t\tif (this.dom.fixed_radio.property('checked')) {\n\t\t\tconfig.last_bin = {\n\t\t\t\tstart: Number(this.dom.last_start_input.property('value')),\n\t\t\t\tstopunbounded: true\n\t\t\t}\n\t\t}\n\n\t\tif (destroyDom) {\n\t\t\tfor (const name of Object.keys(this.dom)) {\n\t\t\t\tthis.dom[name].remove()\n\t\t\t\tdelete this.dom[name]\n\t\t\t}\n\t\t}\n\n\t\treturn config\n\t}\n\n\tundoEdits() {\n\t\tthis.q = this.getDefaultQ()\n\t\tthis.dom.binsTable.selectAll('*').remove()\n\t\tthis.renderBinSizeInput(this.dom.binsTable.append('tr'))\n\t\tthis.renderFirstBinInput(this.dom.binsTable.append('tr'))\n\t\tthis.renderLastBinInputs(this.dom.binsTable.append('tr'))\n\t\tthis.editHandler.handler.density.setBinLines(this.getBoundaryOpts())\n\t}\n}\n"],
+  "mappings": 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+}