@sjcrh/proteinpaint-client 2.163.1 → 2.164.0

package/dist/{2dmaf-I6WQUYPR.js → 2dmaf-6HPYNA5Z.js}

@@ -8,9 +8,9 @@ import {
   renderSandboxFormDiv,
   sayerror,
   to_svg
-} from "./chunk-2EO4IS5N.js";
+} from "./chunk-AP2Y5RCJ.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-D6352YQT.js";
+import "./chunk-WNOODTLM.js";
 import "./chunk-GS2VLJGG.js";
 import {
   mclass,
@@ -1361,4 +1361,4 @@ export {
   d2mafparseinput,
   d2mafui
 };
-//# sourceMappingURL=2dmaf-I6WQUYPR.js.map
+//# sourceMappingURL=2dmaf-6HPYNA5Z.js.map

package/dist/{AIProjectAdmin-VQ4JD75C.js → AIProjectAdmin-HDEBMGES.js}

@@ -1,17 +1,20 @@
+import {
+  buildAnnotationsCsv
+} from "./chunk-XJGPL2JZ.js";
 import {
   PlotBase
-} from "./chunk-BBJWY4W3.js";
+} from "./chunk-OWIYRDIY.js";
 import {
   filterInit,
   getNormalRoot,
   renderTable,
   sayerror
-} from "./chunk-2EO4IS5N.js";
+} from "./chunk-AP2Y5RCJ.js";
 import "./chunk-HJ6L54YS.js";
 import {
   dofetch2,
   dofetch3
-} from "./chunk-D6352YQT.js";
+} from "./chunk-WNOODTLM.js";
 import "./chunk-GS2VLJGG.js";
 import {
   getColors
@@ -104,6 +107,32 @@ var ProjectReposity = class {
       throw error;
     }
   }
+  async getAnnotations(genome, dslabel, projectId) {
+    try {
+      const body = {
+        genome,
+        dslabel,
+        projectId,
+        wsimagesFilenames: ["all"]
+      };
+      const response = await dofetch3("aiProjectSelectedWSImages", { body });
+      const wsimages = response?.wsimages || [];
+      const annotations = [];
+      for (const w of wsimages) {
+        const anns = w.annotations || [];
+        const filename = w.filename;
+        if (Array.isArray(anns)) {
+          for (const a of anns) {
+            annotations.push(Object.assign({ filename }, a));
+          }
+        }
+      }
+      return annotations;
+    } catch (error) {
+      console.error("Error fetching annotations from server:", error);
+      throw error;
+    }
+  }
 };
 
 // plots/aiProjectAdmin/view/ProjectAdminRender.ts
@@ -175,6 +204,19 @@ var ProjectAdminRender = class {
           this.interactions.launchViewer(this.dom.holder, []);
         }
       },
+      {
+        // Export button - pass only project.id and export will be CSV
+        text: "Export",
+        class: "sja_menuoption",
+        callback: async (_, idx) => {
+          const project = this.projects[idx];
+          try {
+            await this.interactions.exportAnnotations(project.id);
+          } catch (_2) {
+            sayerror(this.dom.errorDiv, "Failed to export annotations");
+          }
+        }
+      },
       {
         //TODO: Add logic for admins only once user roles are implemented
         //Leave here for development
@@ -286,7 +328,7 @@ var AIProjectAdminInteractions = class {
       );
       images = response.images;
     }
-    const wsiViewer = await import("./plot.wsi-OA5TLP3B.js");
+    const wsiViewer = await import("./plot.wsi-WPI3WHXS.js");
     wsiViewer.default(this.dslabel, holder, { name: this.genome }, null, config.settings.project.id, images, true);
   }
   async appDispatchEdit(settings, config = {}) {
@@ -303,6 +345,41 @@ var AIProjectAdminInteractions = class {
   getConfig() {
     return this.app.getState().plots.find((p) => p.id === this.id);
   }
+  async exportAnnotations(projectId) {
+    const config = this.getConfig();
+    if (!config || !config.settings) throw new Error(`No plot with id='${this.id}' found.`);
+    let annotations = [];
+    try {
+      annotations = await this.prjtRepo.getAnnotations(this.genome, this.dslabel, projectId);
+    } catch (e) {
+      console.error("Error fetching annotations for export:", e?.message || e);
+      throw e;
+    }
+    const mime = "text/csv;charset=utf-8;";
+    let content;
+    if (!Array.isArray(annotations) || annotations.length === 0) {
+      content = "";
+    } else {
+      content = buildAnnotationsCsv(annotations);
+    }
+    const rawName = config.settings && config.settings.project && config.settings.project.name ? String(config.settings.project.name) : `project-${projectId}`;
+    const safeName = rawName.replace(/[^a-z0-9_.-]/gi, "_").slice(0, 200);
+    const filename = `${safeName}-annotations.csv`;
+    try {
+      const blob = new Blob([content], { type: mime });
+      const url = URL.createObjectURL(blob);
+      const a = document.createElement("a");
+      a.href = url;
+      a.download = filename;
+      document.body.appendChild(a);
+      a.click();
+      a.remove();
+      setTimeout(() => URL.revokeObjectURL(url), 1e3);
+    } catch (e) {
+      console.error("Error creating annotation download:", e?.message || e);
+      throw e;
+    }
+  }
 };
 
 // plots/aiProjectAdmin/view/ClassesTableRender.ts
@@ -451,34 +528,36 @@ var UsersRender = class {
     this.users = users.slice();
   }
   render() {
-    const container = this.dom.holder.append("div").attr("id", "sjpp-users-render").attr("class", "sjpp-deletable-ai-prjt-admin-div").style("padding", "10px");
-    const inputRow = container.append("div").attr("class", "sjpp-users-input-row").style("margin-bottom", "10px");
-    const input = inputRow.append("input").attr("type", "text").attr("placeholder", "user@example.com").attr("id", "sjpp-user-email-input").style("margin-right", "8px").style("width", "300px");
-    const addBtn = inputRow.append("div").text("Add").classed("sja_menuoption", true).style("display", "inline-block").property("disabled", true).on("click", () => {
-      const email = input.property("value").trim();
-      const showError = (msg) => {
-        sayerror(this.dom.errorDiv, msg);
-        setTimeout(() => this.dom.errorDiv.selectAll("*").remove(), 3e3);
-      };
-      if (email.length === 0) {
-        return showError("Email cannot be empty");
-      }
-      const emailRe = /^[A-Za-z0-9._%+-]+@[A-Za-z0-9.-]+\.[A-Za-z]{2,}$/;
-      if (!emailRe.test(email)) {
-        return showError("Invalid email address");
-      }
-      if (this.users.includes(email)) {
-        return showError("Email already added");
-      }
-      this.users.push(email);
-      input.property("value", "");
-      addBtn.property("disabled", true);
+    if (this.users.length > 0) {
+      const container = this.dom.holder.append("div").attr("id", "sjpp-users-render").attr("class", "sjpp-deletable-ai-prjt-admin-div").style("padding", "10px");
+      const inputRow = container.append("div").attr("class", "sjpp-users-input-row").style("margin-bottom", "10px");
+      const input = inputRow.append("input").attr("type", "text").attr("placeholder", "user@example.com").attr("id", "sjpp-user-email-input").style("margin-right", "8px").style("width", "300px");
+      const addBtn = inputRow.append("div").text("Add").classed("sja_menuoption", true).style("display", "inline-block").property("disabled", true).on("click", () => {
+        const email = input.property("value").trim();
+        const showError = (msg) => {
+          sayerror(this.dom.errorDiv, msg);
+          setTimeout(() => this.dom.errorDiv.selectAll("*").remove(), 3e3);
+        };
+        if (email.length === 0) {
+          return showError("Email cannot be empty");
+        }
+        const emailRe = /^[A-Za-z0-9._%+-]+@[A-Za-z0-9.-]+\.[A-Za-z]{2,}$/;
+        if (!emailRe.test(email)) {
+          return showError("Invalid email address");
+        }
+        if (this.users.includes(email)) {
+          return showError("Email already added");
+        }
+        this.users.push(email);
+        input.property("value", "");
+        addBtn.property("disabled", true);
+        this.renderTableArea(container);
+      });
+      input.on("input", () => {
+        addBtn.property("disabled", input.property("value").trim().length === 0);
+      });
       this.renderTableArea(container);
-    });
-    input.on("input", () => {
-      addBtn.property("disabled", input.property("value").trim().length === 0);
-    });
-    this.renderTableArea(container);
+    }
   }
   renderTableArea(container) {
     container.select(".sjpp-users-table-area").remove();
@@ -561,18 +640,13 @@ var CreateProjectRender = class {
         alert("No images match your filter criteria.");
         return;
       }
-      if (!this.usersRender || !Array.isArray(this.usersRender.users) || this.usersRender.users.length === 0) {
-        alert("Please add at least one user.");
-        btn.attr("disabled", null);
-        return;
-      }
       await this.interactions.addProject({
         project: {
           filter: this.filter,
           classes: this.classesTable.rows.map((row, i) => {
             return { label: row[1].value, color: row[2].color, key_shortcut: `Digit${i + 1}` };
           }),
-          users: this.usersRender.users
+          users: this.usersRender?.users || []
         }
       });
       this.dom.holder.selectAll("*").remove();
@@ -703,4 +777,4 @@ export {
   componentInit,
   getPlotConfig
 };
-//# sourceMappingURL=AIProjectAdmin-VQ4JD75C.js.map
+//# sourceMappingURL=AIProjectAdmin-HDEBMGES.js.map

package/dist/AIProjectAdmin-HDEBMGES.js.map

@@ -0,0 +1,7 @@
+{
+  "version": 3,
+  "sources": ["../plots/aiProjectAdmin/defaults.ts", "../plots/aiProjectAdmin/repo/ProjectReposity.ts", "../plots/aiProjectAdmin/view/ProjectAdminRender.ts", "../plots/aiProjectAdmin/interactions/AIProjectAdminInteractions.ts", "../plots/aiProjectAdmin/view/ClassesTableRender.ts", "../plots/aiProjectAdmin/view/SelectorTableRender.ts", "../plots/aiProjectAdmin/view/UsersRender.ts", "../plots/aiProjectAdmin/view/CreateProjectRender.ts", "../plots/aiProjectAdmin/AIProjectAdmin.ts"],
+  "sourcesContent": ["import type Settings from './Settings'\n\nexport function getDefaultAIProjectAdminSettings(overrides = {}): Settings {\n\tconst defaults: Settings = {}\n\treturn Object.assign(defaults, overrides)\n}\n", "import { dofetch2, dofetch3 } from '#common/dofetch'\nimport type { AIProjectAdminRequest, AIProjectAdminResponse } from '#types'\n\nexport class ProjectReposity {\n\tpublic async getProjects(genome: string, dslabel: string): Promise<string[]> {\n\t\tconst body: AIProjectAdminRequest = {\n\t\t\tgenome,\n\t\t\tdslabel,\n\t\t\tfor: 'list'\n\t\t}\n\t\ttry {\n\t\t\tconst response = await dofetch3('aiProjectAdmin', { body })\n\t\t\treturn response || []\n\t\t} catch (error) {\n\t\t\tconsole.error('Error fetching projects:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t/** Gets the image paths from db */\n\tpublic async getImagePaths(genome: string, dslabel: string, project: any): Promise<AIProjectAdminResponse> {\n\t\tconst body: AIProjectAdminRequest = {\n\t\t\tgenome,\n\t\t\tdslabel,\n\t\t\tfor: 'images',\n\t\t\tproject\n\t\t}\n\t\ttry {\n\t\t\treturn await dofetch3('aiProjectAdmin', { body })\n\t\t} catch (error) {\n\t\t\tconsole.error('Error fetching images:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n\n\tpublic async updateProject(_body: any, method: string): Promise<AIProjectAdminResponse> {\n\t\tconst body: AIProjectAdminRequest = Object.assign({}, _body, { for: 'admin' })\n\t\ttry {\n\t\t\tif (method == 'PUT' || method == 'DELETE') {\n\t\t\t\t/** 3rd argument is for serverData caching.\n\t\t\t\t * Do not cache put or delete requests */\n\t\t\t\treturn await dofetch2('aiProjectAdmin', { method, body }, {})\n\t\t\t}\n\t\t\treturn await dofetch3('aiProjectAdmin', { method, body })\n\t\t} catch (error) {\n\t\t\tconsole.error('Error fetching projects:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n\n\t//TODO: Will need a method to call metadata API, then build dictionary\n\tasync getTerms(app: any): Promise<any> {\n\t\tconst root = { id: '__root', name: 'root', __tree_isroot: true }\n\t\ttry {\n\t\t\tawait app.vocabApi.buildAdHocDictionary()\n\t\t\tconst terms = await app.vocabApi.getTermChildren(root, [])\n\t\t\treturn terms || []\n\t\t} catch (error) {\n\t\t\tconsole.error('Error getting terms:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n\n\tasync getAnnotations(genome: string, dslabel: string, projectId: number) {\n\t\ttry {\n\t\t\tconst body = {\n\t\t\t\tgenome,\n\t\t\t\tdslabel,\n\t\t\t\tprojectId,\n\t\t\t\twsimagesFilenames: ['all']\n\t\t\t}\n\t\t\tconst response: any = await dofetch3('aiProjectSelectedWSImages', { body })\n\t\t\tconst wsimages = response?.wsimages || []\n\t\t\tconst annotations: any[] = []\n\t\t\tfor (const w of wsimages) {\n\t\t\t\tconst anns = w.annotations || []\n\t\t\t\tconst filename = w.filename\n\t\t\t\tif (Array.isArray(anns)) {\n\t\t\t\t\tfor (const a of anns) {\n\t\t\t\t\t\t// attach filename so consumers know which WSI each annotation came from\n\t\t\t\t\t\tannotations.push(Object.assign({ filename }, a))\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t}\n\t\t\treturn annotations\n\t\t} catch (error) {\n\t\t\tconsole.error('Error fetching annotations from server:', error)\n\t\t\tthrow error\n\t\t}\n\t}\n}\n", "import { renderTable, sayerror } from '#dom'\nimport { debounce } from 'debounce'\nimport type { AIProjectAdminInteractions } from '../interactions/AIProjectAdminInteractions'\n\nexport class ProjectAdminRender {\n\tdom: any\n\tprojects: any[]\n\tinteractions: AIProjectAdminInteractions\n\n\tconstructor(dom: any, projects: any[], interactions: AIProjectAdminInteractions) {\n\t\tthis.dom = dom\n\t\tthis.projects = projects //returns as [{ value: 'Project1' }, { value: 'Project2' }, ...]\n\t\tthis.interactions = interactions\n\t}\n\n\t/** Renders project administration UI, allowing users to\n\t * create new projects or edit existing ones.*/\n\trenderProjectAdmin() {\n\t\tconst projectDiv = this.dom.holder\n\t\t\t.append('div')\n\t\t\t.attr('id', 'sjpp-ai-prjt-admin-projects')\n\t\t\t.attr('class', 'sjpp-deletable-ai-prjt-admin-div')\n\t\tthis.renderCreateProject(projectDiv)\n\t\tthis.renderProjectSelection(projectDiv)\n\t}\n\n\t/** Users submit a new project name before sample\n\t * filtering UI to finalize project creation.*/\n\trenderCreateProject(projectDiv) {\n\t\tconst newProjectDiv = projectDiv.append('div').attr('class', 'sjpp-project-select-new').style('padding', '10px')\n\n\t\tconst input = newProjectDiv\n\t\t\t.append('input')\n\t\t\t.attr('id', 'sjpp-new-project-name')\n\t\t\t.attr('display', 'inline-block')\n\t\t\t.attr('placeholder', 'New project name')\n\n\t\tconst button = newProjectDiv\n\t\t\t.append('div')\n\t\t\t.text('Create Project')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'inline-block')\n\t\t\t.property('disabled', true)\n\t\t\t.on('click', async () => {\n\t\t\t\tconst projectName = input.property('value')\n\t\t\t\tconst prjtNameLen = projectName.trim().length\n\n\t\t\t\tconst showError = (msg: string) => {\n\t\t\t\t\tsayerror(this.dom.errorDiv, msg)\n\t\t\t\t\tinput.property('value', '')\n\t\t\t\t\tbutton.property('disabled', true)\n\n\t\t\t\t\t//Show error for 3 seconds, then remove\n\t\t\t\t\tsetTimeout(() => {\n\t\t\t\t\t\tthis.dom.errorDiv.selectAll('*').remove()\n\t\t\t\t\t}, 3000)\n\t\t\t\t}\n\n\t\t\t\tif (prjtNameLen == 0) {\n\t\t\t\t\t//Shouldn't be necessary because of the debouncer\n\t\t\t\t\treturn showError('Project name cannot be empty')\n\t\t\t\t}\n\t\t\t\tif (prjtNameLen > 50 || prjtNameLen < 3) {\n\t\t\t\t\treturn showError('Project name must be between 3 and 50 characters')\n\t\t\t\t}\n\t\t\t\tconst notUnique = this.projects.some((p: any) => p.name === projectName.trim())\n\t\t\t\tif (notUnique) {\n\t\t\t\t\treturn showError(`Project name '${projectName}' already exists`)\n\t\t\t\t}\n\n\t\t\t\t//Show project name in sandbox header\n\t\t\t\tif (this.dom.header) this.dom.header.text(`Project: ${projectName}`)\n\n\t\t\t\t//calls main() to trigger CreateProjectRender\n\t\t\t\tawait this.interactions.appDispatchEdit({ settings: { project: { name: projectName, type: 'new' } } })\n\t\t\t})\n\n\t\tinput.on('keydown', () => {\n\t\t\tconst debouncer = () => {\n\t\t\t\tbutton.property('disabled', input.property('value').length == 0)\n\t\t\t}\n\t\t\tdebounce(debouncer, 300)()\n\t\t})\n\t}\n\n\t/** Users may select an existing project from a table\n\t * returned for the db to edit or delete, depending\n\t * on user roles.*/\n\trenderProjectSelection(projectDiv) {\n\t\tif (!this.projects.length) return\n\n\t\tconst tableDiv = projectDiv.append('div').attr('class', 'sjpp-project-select-table').style('padding', '10px')\n\t\tconst columns = [{ label: 'Project', sortable: true }]\n\n\t\tconst columnButtons = [\n\t\t\t{\n\t\t\t\ttext: 'Edit',\n\t\t\t\tclass: 'sja_menuoption',\n\t\t\t\t//_ = event, __ = idx\n\t\t\t\tcallback: async (_, idx) => {\n\t\t\t\t\t/** TODO: open wsisamples plot ||\n\t\t\t\t\t *  get project details rather than edit the db */\n\t\t\t\t\tconst project = this.projects[idx]\n\t\t\t\t\tawait this.interactions.appDispatchEdit({ settings: { project } })\n\t\t\t\t\t// remove 'dev' for production\n\t\t\t\t\tthis.interactions.launchViewer(this.dom.holder, [])\n\t\t\t\t}\n\t\t\t},\n\t\t\t{\n\t\t\t\t// Export button - pass only project.id and export will be CSV\n\t\t\t\ttext: 'Export',\n\t\t\t\tclass: 'sja_menuoption',\n\t\t\t\tcallback: async (_, idx) => {\n\t\t\t\t\tconst project = this.projects[idx]\n\t\t\t\t\ttry {\n\t\t\t\t\t\tawait this.interactions.exportAnnotations(project.id)\n\t\t\t\t\t} catch (_: any) {\n\t\t\t\t\t\tsayerror(this.dom.errorDiv, 'Failed to export annotations')\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t},\n\t\t\t{\n\t\t\t\t//TODO: Add logic for admins only once user roles are implemented\n\t\t\t\t//Leave here for development\n\t\t\t\ttext: 'Delete',\n\t\t\t\tclass: 'sja_menuoption',\n\t\t\t\tcallback: (_, i) => {\n\t\t\t\t\tconst project = this.projects[i]\n\t\t\t\t\tthis.interactions.deleteProject(project)\n\n\t\t\t\t\t//Update UI after deletion. Maybe cleaner way to handle this?\n\t\t\t\t\t//Maybe app.dispatch and rerender instead?\n\t\t\t\t\tthis.projects.splice(i, 1)\n\t\t\t\t\t//Remove the table from the projectDiv and re-render\n\t\t\t\t\tprojectDiv.select('.sjpp-project-select-table').remove()\n\t\t\t\t\tthis.renderProjectSelection(projectDiv)\n\t\t\t\t}\n\t\t\t}\n\t\t]\n\n\t\trenderTable({\n\t\t\tdiv: tableDiv,\n\t\t\trows: this.projects.map((p: any) => {\n\t\t\t\treturn [{ value: p.name }]\n\t\t\t}),\n\t\t\theader: {\n\t\t\t\tallowSort: true\n\t\t\t},\n\t\t\tcolumns,\n\t\t\tsingleMode: true,\n\t\t\tcolumnButtons\n\t\t})\n\t}\n}\n", "import type { ProjectReposity } from '../repo/ProjectReposity'\nimport type { AIProjectAdminResponse } from '#types'\nimport { buildAnnotationsCsv } from '#plots/wsiviewer/interactions/annotationsCsv.ts'\n\nexport class AIProjectAdminInteractions {\n\tapp: any\n\tid: string\n\tgenome: string\n\tdslabel: string\n\tprjtRepo: ProjectReposity\n\n\tconstructor(app: any, id: string, prjtRepo: ProjectReposity) {\n\t\tthis.app = app\n\t\tthis.id = id\n\t\tthis.genome = app.vocabApi.vocab.genome\n\t\tthis.dslabel = app.vocabApi.vocab.dslabel\n\t\tthis.prjtRepo = prjtRepo\n\t}\n\n\tasync addProject(opts: { project: any }): Promise<void> {\n\t\tconst config = this.getConfig()\n\t\tconst projectObject = Object.assign({}, config.settings.project, opts.project)\n\n\t\tconst body = {\n\t\t\tgenome: this.genome,\n\t\t\tdslabel: this.dslabel,\n\t\t\tproject: projectObject\n\t\t}\n\t\ttry {\n\t\t\tawait this.prjtRepo.updateProject(body, 'PUT')\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error adding project:', e.message || e)\n\t\t\tthrow e\n\t\t}\n\t}\n\n\tasync editProject(opts: { project: any }): Promise<void> {\n\t\tconst config = this.getConfig()\n\t\tconst project = Object.assign(\n\t\t\t{},\n\t\t\tconfig.settings.project,\n\t\t\t{\n\t\t\t\ttype: 'edit'\n\t\t\t},\n\t\t\topts.project\n\t\t)\n\n\t\tconst body = {\n\t\t\tgenome: this.genome,\n\t\t\tdslabel: this.dslabel,\n\t\t\tproject\n\t\t}\n\t\ttry {\n\t\t\tconst res = (await this.prjtRepo.updateProject(body, 'POST')) as any\n\t\t\tif (!project.id) project.id = res.projectId\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error editing project:', e.message || e)\n\t\t\tthrow e\n\t\t}\n\t\tawait this.appDispatchEdit({ settings: { project } }, config)\n\t}\n\n\tasync deleteProject(project: { value: string; id: number }): Promise<void> {\n\t\tconst body = {\n\t\t\tgenome: this.genome,\n\t\t\tdslabel: this.dslabel,\n\t\t\tproject: {\n\t\t\t\tname: project.value,\n\t\t\t\tid: project.id\n\t\t\t}\n\t\t}\n\n\t\ttry {\n\t\t\tawait this.prjtRepo.updateProject(body, 'DELETE')\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error deleting project:', e.message || e)\n\t\t\tthrow e\n\t\t}\n\t}\n\n\tasync getFilteredImages(filter: any): Promise<AIProjectAdminResponse> {\n\t\tconst config = this.getConfig()\n\t\treturn await this.app.vocabApi.getFilteredAiImages(config.settings.project, filter)\n\t}\n\n\tasync launchViewer(holder: any, _images?: string[]): Promise<void> {\n\t\tholder.selectAll('.sjpp-deletable-ai-prjt-admin-div').remove()\n\n\t\tconst config = this.getConfig()\n\t\tlet images: string[] = []\n\n\t\tif (_images && _images.length > 0) {\n\t\t\timages = _images\n\t\t} else {\n\t\t\tconst response: AIProjectAdminResponse = await this.prjtRepo.getImagePaths(\n\t\t\t\tthis.genome,\n\t\t\t\tthis.dslabel,\n\t\t\t\tconfig.settings.project\n\t\t\t)\n\t\t\timages = response.images\n\t\t}\n\n\t\tconst wsiViewer = await import('#plots/wsiviewer/plot.wsi.js')\n\t\twsiViewer.default(this.dslabel, holder, { name: this.genome }, null, config.settings.project.id, images, true)\n\t}\n\n\tpublic async appDispatchEdit(settings: any, config: any = {}): Promise<void> {\n\t\tif (!config?.settings) {\n\t\t\tconfig = this.getConfig()\n\t\t\tif (!config) throw new Error(`No plot with id='${this.id}' found.`)\n\t\t}\n\n\t\tawait this.app.dispatch({\n\t\t\ttype: 'plot_edit',\n\t\t\tid: this.id,\n\t\t\tconfig: Object.assign(settings, config.settings)\n\t\t})\n\t}\n\n\tprivate getConfig(): any {\n\t\treturn this.app.getState().plots.find((p: any) => p.id === this.id)\n\t}\n\n\tpublic async exportAnnotations(projectId: number): Promise<void> {\n\t\tconst config = this.getConfig()\n\t\tif (!config || !config.settings) throw new Error(`No plot with id='${this.id}' found.`)\n\n\t\t// fetch annotations for the entire project (server endpoint will expand ['all'] to all images)\n\t\tlet annotations: any[] = []\n\t\ttry {\n\t\t\tannotations = await this.prjtRepo.getAnnotations(this.genome, this.dslabel, projectId)\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error fetching annotations for export:', e?.message || e)\n\t\t\tthrow e\n\t\t}\n\n\t\t// Always produce CSV\n\t\tconst mime = 'text/csv;charset=utf-8;'\n\t\tlet content: string\n\n\t\tif (!Array.isArray(annotations) || annotations.length === 0) {\n\t\t\tcontent = ''\n\t\t} else {\n\t\t\t// use shared CSV builder; let it pick per-annotation filename (a.filename || a.image)\n\t\t\tcontent = buildAnnotationsCsv(annotations as any[])\n\t\t}\n\n\t\t// build a safe filename for download: prefer project name, fallback to projectId\n\t\tconst rawName =\n\t\t\tconfig.settings && config.settings.project && config.settings.project.name\n\t\t\t\t? String(config.settings.project.name)\n\t\t\t\t: `project-${projectId}`\n\t\tconst safeName = rawName.replace(/[^a-z0-9_.-]/gi, '_').slice(0, 200)\n\t\tconst filename = `${safeName}-annotations.csv`\n\n\t\ttry {\n\t\t\tconst blob = new Blob([content], { type: mime })\n\t\t\tconst url = URL.createObjectURL(blob)\n\t\t\tconst a = document.createElement('a')\n\t\t\ta.href = url\n\t\t\ta.download = filename\n\t\t\tdocument.body.appendChild(a)\n\t\t\ta.click()\n\t\t\ta.remove()\n\t\t\tsetTimeout(() => URL.revokeObjectURL(url), 1000)\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error creating annotation download:', e?.message || e)\n\t\t\tthrow e\n\t\t}\n\t}\n}\n", "import { renderTable } from '#dom'\nimport { getColors } from '#shared/common.js'\nimport { rgb } from 'd3-color'\nimport type { TableColumn, TableRow } from '#dom'\nimport type { Elem } from '../../../types/d3'\n\nexport class ClassesTableRender {\n\tdom: {\n\t\tholder: Elem\n\t\ttableDiv: Elem\n\t\tbtnDiv: Elem\n\t}\n\tcolumns: TableColumn[]\n\trows: TableRow[]\n\t/** table.ts updates this.rows and cell values in editCallback\n\t * Save a copy to check for duplicates when editing class names.*/\n\trowsCopy: TableRow[]\n\n\tconstructor(holder: any, rows?: TableRow[]) {\n\t\tthis.dom = {\n\t\t\tholder,\n\t\t\ttableDiv: holder.append('div'),\n\t\t\tbtnDiv: holder.append('div')\n\t\t}\n\t\tthis.columns = [\n\t\t\t{ label: '' }, // Empty for the delete icon\n\t\t\t{\n\t\t\t\tlabel: 'NAME',\n\t\t\t\teditCallback: (rowIdx, cell) => {\n\t\t\t\t\tconst newValue = (cell.value as string).trim()\n\t\t\t\t\tconst foundSameName = this.rows.some((r, i) => newValue === (r[1].value as string).trim() && i !== rowIdx)\n\t\t\t\t\tif (foundSameName) {\n\t\t\t\t\t\talert(`Class name '${newValue}' already exists`)\n\t\t\t\t\t\t/** Reset to original value\n\t\t\t\t\t\t * renderTable() updates arg.rows and cell value before this callback.\n\t\t\t\t\t\t * This resets the value to the original value */\n\t\t\t\t\t\tcell.value = this.rowsCopy[rowIdx][1].value\n\t\t\t\t\t\tcell.__td.text(this.rowsCopy[rowIdx][1].value)\n\t\t\t\t\t\treturn\n\t\t\t\t\t}\n\t\t\t\t\tthis.rowsCopy = this.rows.map(r => r.map(c => ({ ...c })))\n\t\t\t\t}\n\t\t\t},\n\t\t\t{ label: 'COLOR' }\n\t\t]\n\t\tconst colorScale = getColors(5)\n\t\tthis.rows = rows || this.setDefaultClasses(colorScale)\n\t\tthis.rowsCopy = []\n\n\t\tthis.renderTable()\n\t\tthis.renderAddClassBtn(colorScale)\n\t}\n\n\trenderTable() {\n\t\tthis.dom.tableDiv.select('table').remove()\n\t\tif (!this.rows || this.rows.length === 0) return\n\n\t\t// Deep copy to avoid reference issues\n\t\t// Regenerate on every render\n\t\tthis.rowsCopy = this.rows.map(r => r.map(c => ({ ...c })))\n\n\t\trenderTable({\n\t\t\tdiv: this.dom.tableDiv,\n\t\t\tcolumns: this.columns,\n\t\t\trows: this.rows,\n\t\t\tstriped: false,\n\t\t\tshowLines: false,\n\t\t\tsingleMode: false,\n\t\t\tresize: true\n\t\t})\n\n\t\t//editCallback only works with changing the value of the cell\n\t\tfor (const [i, row] of this.rows.entries()) {\n\t\t\tconst deleteBtn = row[0].__td.select('.sja_menuoption')\n\t\t\tdeleteBtn.on('click', () => {\n\t\t\t\tthis.rows.splice(i, 1)\n\t\t\t\tthis.renderTable()\n\t\t\t})\n\t\t}\n\t}\n\n\tsetDefaultClasses(colorScale) {\n\t\t//TODO default classes from dataset\n\t\tconst rows: TableRow[] = []\n\n\t\tfor (let i = 0; i < 4; i++) {\n\t\t\tthis.getNewClass(colorScale, rows)\n\t\t}\n\n\t\treturn rows\n\t}\n\n\tgetNewClass(colorScale: any, rows: TableRow[]) {\n\t\tconst getName = (i: number) => `New class ${i}`\n\n\t\tlet i = 1\n\t\tlet found = true\n\t\twhile (found) {\n\t\t\tconst checkName = getName(i)\n\t\t\tfound = rows.some(r => r[1].value == checkName)\n\t\t\tif (found) i++\n\t\t}\n\n\t\trows.push([\n\t\t\t{ html: `<div class=\"sja_menuoption\">&times;<div>` },\n\t\t\t{ value: getName(i) },\n\t\t\t{ color: rgb(colorScale(`${i}`)).formatHex() }\n\t\t])\n\t}\n\n\trenderAddClassBtn(colorScale: any) {\n\t\tthis.dom.btnDiv\n\t\t\t.append('div')\n\t\t\t.text('Add Class')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'inline-block')\n\t\t\t.style('margin', '10px 0px 0px 0px')\n\t\t\t.on('click', () => {\n\t\t\t\tif (this.rows.length >= 9) {\n\t\t\t\t\talert('Maximum number of classes reached.')\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\tthis.getNewClass(colorScale, this.rows)\n\t\t\t\tthis.renderTable()\n\t\t\t})\n\t}\n}\n", "import { renderTable } from '#dom'\nimport type { TableColumn, TableRow } from '#dom'\nimport type { AIProjectAdminInteractions } from '../interactions/AIProjectAdminInteractions'\nimport type { Elem, Div } from '../../../types/d3'\n\nexport class SelectorTableRender {\n\tdom: {\n\t\tholder: Elem\n\t\ttableDiv: Div | Elem\n\t\tbtnDiv: Div | Elem\n\t}\n\timages: { rows: any[]; cols: any[] }\n\tinteractions: AIProjectAdminInteractions\n\tselectedRows: Set<number>\n\n\tconstructor(\n\t\tholder: Elem,\n\t\tinteractions: AIProjectAdminInteractions,\n\t\timages: { rows: TableRow[]; cols: TableColumn[] }\n\t) {\n\t\tthis.dom = {\n\t\t\tholder,\n\t\t\ttableDiv: holder\n\t\t\t\t.append('div')\n\t\t\t\t.attr('class', '.sjpp-deletable-ai-prjt-admin-div')\n\t\t\t\t.attr('id', 'sjpp-selector-table')\n\t\t\t\t.style('padding', '10px 0'),\n\t\t\tbtnDiv: holder.append('div').attr('class', '.sjpp-deletable-ai-prjt-admin-div').attr('id', 'sjpp-selector-btns')\n\t\t}\n\t\tthis.images = images\n\t\tthis.interactions = interactions\n\t\t/** This is for development\n\t\t * eventually the API request will return which rows should be selected.\n\t\t */\n\t\tthis.selectedRows = new Set(\n\t\t\tthis.images.rows\n\t\t\t\t.filter((_, i) => {\n\t\t\t\t\tif (i < 50) return true\n\t\t\t\t})\n\t\t\t\t.map((_, i) => i)\n\t\t) // Select first 50 rows for prototype\n\n\t\tthis.render()\n\t}\n\n\tprivate render() {\n\t\trenderTable({\n\t\t\tdiv: this.dom.tableDiv,\n\t\t\tcolumns: this.images.cols.map(c => ({ ...c, sortable: true })),\n\t\t\trows: this.images.rows,\n\t\t\tselectedRows: Array.from(this.selectedRows),\n\t\t\tstriped: true,\n\t\t\theader: { allowSort: true },\n\t\t\tnoButtonCallback: (i, node) => {\n\t\t\t\tif (node.checked) {\n\t\t\t\t\tthis.selectedRows.add(i)\n\t\t\t\t} else {\n\t\t\t\t\tthis.selectedRows.delete(i)\n\t\t\t\t}\n\t\t\t}\n\t\t})\n\n\t\tthis.renderApplyBtn()\n\t}\n\n\tprivate renderApplyBtn() {\n\t\tconst btn = this.dom.btnDiv\n\t\t\t.append('div')\n\t\t\t.text('Apply')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'block')\n\t\t\t.style('width', 'fit-content')\n\t\t\t.style('margin-left', '5vw')\n\t\t\t.on('click', async () => {\n\t\t\t\tif (!this.selectedRows.size) alert(`No rows selected. Please select some rows.`)\n\t\t\t\t//Don't allow multiple clicks\n\t\t\t\tbtn.attr('disabled', true)\n\n\t\t\t\tconst images = Array.from(this.selectedRows).map(i => `${this.images.rows[i][0].value}.svs`)\n\t\t\t\tawait this.interactions.editProject({\n\t\t\t\t\tproject: {\n\t\t\t\t\t\timages\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t\tthis.dom.holder.selectAll('*').remove()\n\t\t\t\tthis.interactions.launchViewer(this.dom.holder, images)\n\t\t\t})\n\t}\n}\n", "import { renderTable, sayerror } from '#dom'\n\nexport class UsersRender {\n\tdom: any\n\tusers: string[]\n\n\tconstructor(dom: any, users: string[] = []) {\n\t\tthis.dom = dom\n\t\tthis.users = users.slice()\n\t}\n\n\trender() {\n\t\t// TODO remove this if check after sso is enabled\n\t\tif (this.users.length > 0) {\n\t\t\t// container\n\t\t\tconst container = this.dom.holder\n\t\t\t\t.append('div')\n\t\t\t\t.attr('id', 'sjpp-users-render')\n\t\t\t\t.attr('class', 'sjpp-deletable-ai-prjt-admin-div')\n\t\t\t\t.style('padding', '10px')\n\n\t\t\tconst inputRow = container.append('div').attr('class', 'sjpp-users-input-row').style('margin-bottom', '10px')\n\n\t\t\tconst input = inputRow\n\t\t\t\t.append('input')\n\t\t\t\t.attr('type', 'text')\n\t\t\t\t.attr('placeholder', 'user@example.com')\n\t\t\t\t.attr('id', 'sjpp-user-email-input')\n\t\t\t\t.style('margin-right', '8px')\n\t\t\t\t.style('width', '300px')\n\n\t\t\tconst addBtn = inputRow\n\t\t\t\t.append('div')\n\t\t\t\t.text('Add')\n\t\t\t\t.classed('sja_menuoption', true)\n\t\t\t\t.style('display', 'inline-block')\n\t\t\t\t.property('disabled', true)\n\t\t\t\t.on('click', () => {\n\t\t\t\t\tconst email = input.property('value').trim()\n\t\t\t\t\tconst showError = (msg: string) => {\n\t\t\t\t\t\tsayerror(this.dom.errorDiv, msg)\n\t\t\t\t\t\t// clear after 3s\n\t\t\t\t\t\tsetTimeout(() => this.dom.errorDiv.selectAll('*').remove(), 3000)\n\t\t\t\t\t}\n\n\t\t\t\t\tif (email.length === 0) {\n\t\t\t\t\t\treturn showError('Email cannot be empty')\n\t\t\t\t\t}\n\n\t\t\t\t\tconst emailRe = /^[A-Za-z0-9._%+-]+@[A-Za-z0-9.-]+\\.[A-Za-z]{2,}$/\n\n\t\t\t\t\tif (!emailRe.test(email)) {\n\t\t\t\t\t\treturn showError('Invalid email address')\n\t\t\t\t\t}\n\n\t\t\t\t\tif (this.users.includes(email)) {\n\t\t\t\t\t\treturn showError('Email already added')\n\t\t\t\t\t}\n\n\t\t\t\t\tthis.users.push(email)\n\t\t\t\t\tinput.property('value', '')\n\t\t\t\t\taddBtn.property('disabled', true)\n\t\t\t\t\tthis.renderTableArea(container)\n\t\t\t\t})\n\n\t\t\tinput.on('input', () => {\n\t\t\t\taddBtn.property('disabled', input.property('value').trim().length === 0)\n\t\t\t})\n\n\t\t\tthis.renderTableArea(container)\n\t\t}\n\t}\n\n\tprivate renderTableArea(container: any) {\n\t\tcontainer.select('.sjpp-users-table-area').remove()\n\n\t\tconst tableDiv = container.append('div').attr('class', 'sjpp-users-table-area').style('padding', '6px 0')\n\n\t\tif (!this.users.length) {\n\t\t\ttableDiv.append('div').text('No users added yet.').style('color', '#666')\n\t\t\treturn\n\t\t}\n\n\t\tconst columns = [{ label: 'Email', sortable: true }]\n\n\t\tconst columnButtons = [\n\t\t\t{\n\t\t\t\ttext: '\u00D7',\n\t\t\t\tclass: 'sja_menuoption',\n\t\t\t\tcallback: (_, idx: number) => {\n\t\t\t\t\t// remove user and re-render\n\t\t\t\t\tthis.users.splice(idx, 1)\n\t\t\t\t\t// clear and re-render table area\n\t\t\t\t\tcontainer.select('.sjpp-users-table-area').remove()\n\t\t\t\t\tthis.renderTableArea(container)\n\t\t\t\t}\n\t\t\t}\n\t\t]\n\n\t\trenderTable({\n\t\t\tdiv: tableDiv,\n\t\t\trows: this.users.map(u => [{ value: u }]),\n\t\t\tcolumns,\n\t\t\tcolumnButtons,\n\t\t\tsingleMode: false,\n\t\t\tstriped: false,\n\t\t\tshowLines: false,\n\t\t\tresize: true\n\t\t})\n\t\ttableDiv.selectAll('.sja_menuoption').html('\u00D7<div></div>')\n\t}\n}\n", "import { filterInit, getNormalRoot } from '#filter'\nimport { ClassesTableRender } from './ClassesTableRender'\nimport type { Elem } from '../../../types/d3'\nimport type { AIProjectAdminInteractions } from '../interactions/AIProjectAdminInteractions'\nimport { SelectorTableRender } from './SelectorTableRender'\nimport { UsersRender } from './UsersRender'\n\nexport class CreateProjectRender {\n\tdom: {\n\t\tholder: Elem\n\t\terrorDiv: Elem\n\t\tfilterDiv: Elem\n\t\tclassDiv: Elem\n\t\tusersDiv?: Elem\n\t}\n\tapp: any\n\tinteractions: AIProjectAdminInteractions\n\tfilter: any\n\tclassesTable?: ClassesTableRender\n\tusersRender?: UsersRender\n\n\tconstructor(dom: any, app: any, interactions: AIProjectAdminInteractions) {\n\t\tdom.holder.style('padding', '10px 20px').attr('class', 'sjpp-deletable-ai-prjt-admin-div')\n\n\t\tconst filterDiv = dom.holder.append('div').attr('id', 'sjpp-ai-prjt-admin-filter-div')\n\n\t\tconst wrapper = dom.holder\n\t\t\t.append('div')\n\t\t\t.attr('id', 'sjpp-ai-prjt-admin-classes-users-wrapper')\n\t\t\t.style('display', 'flex')\n\t\t\t.style('gap', '20px')\n\t\t\t.style('align-items', 'flex-start')\n\t\t\t.style('padding', '20px 0px')\n\n\t\tconst left = wrapper.append('div').attr('id', 'sjpp-ai-prjt-admin-classes-table').style('flex', '0 1 auto')\n\n\t\tconst right = wrapper\n\t\t\t.append('div')\n\t\t\t.attr('id', 'sjpp-ai-prjt-admin-users')\n\t\t\t.style('width', '320px')\n\t\t\t.style('margin-left', '8px')\n\n\t\tthis.dom = {\n\t\t\tholder: dom.holder,\n\t\t\terrorDiv: dom.errorDiv,\n\t\t\tfilterDiv: filterDiv,\n\t\t\tclassDiv: left,\n\t\t\tusersDiv: right\n\t\t}\n\n\t\tthis.app = app\n\t\tthis.interactions = interactions\n\t\tthis.filter = null\n\t}\n\n\trender() {\n\t\tthis.renderFilter()\n\t\tthis.classesTable = new ClassesTableRender(this.dom.classDiv)\n\n\t\tthis.usersRender = new UsersRender({ holder: this.dom.usersDiv, errorDiv: this.dom.errorDiv }, [])\n\t\tthis.usersRender.render()\n\n\t\tthis.renderApplyBtn()\n\t}\n\n\tprivate renderFilter() {\n\t\tconst filter = filterInit({\n\t\t\tholder: this.dom.filterDiv,\n\t\t\temptyLabel: 'Add filter',\n\t\t\tvocabApi: this.app.vocabApi,\n\t\t\ttermdbConfig: this.app.vocabApi.termdbConfig,\n\t\t\tcallback: filter => {\n\t\t\t\tthis.filter = filter\n\t\t\t}\n\t\t})\n\n\t\tconst state = this.app.getState()\n\t\tconst root = getNormalRoot(state.termfilter.filter)\n\t\tfilter.main(root)\n\t}\n\n\tprivate renderApplyBtn() {\n\t\tconst btn = this.dom.classDiv\n\t\t\t.append('div')\n\t\t\t.text('Apply')\n\t\t\t.classed('sja_menuoption', true)\n\t\t\t.style('display', 'inline-block')\n\t\t\t.style('margin-left', '200px')\n\t\t\t.on('click', async () => {\n\t\t\t\t/**** Uncomment before production */\n\n\t\t\t\t// const invalidInfo = this.validateInput()\n\t\t\t\t// const numInvalid = invalidInfo.entries?.length\n\t\t\t\t// if (numInvalid) {\n\t\t\t\t// \t/** TODO: allow user to ignore filter error on second click */\n\t\t\t\t// \tif (numInvalid === 1) sayerror(this.dom.errorDiv, invalidInfo.entries[0].reason)\n\t\t\t\t//  else InvalidDataUI.render(this.dom.errorDiv, invalidInfo)\n\t\t\t\t// \treturn\n\t\t\t\t// }\n\t\t\t\tbtn.attr('disabled', true) //Don't allow multiple clicks\n\n\t\t\t\tconst selections: any = await this.interactions.getFilteredImages(this.filter)\n\t\t\t\tif (this.filter && (selections.status != 'ok' || selections.data.length === 0)) {\n\t\t\t\t\talert('No images match your filter criteria.')\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\t// TODO: Enable user assignment after SSO is ready\n\t\t\t\t// if (!this.usersRender || !Array.isArray(this.usersRender.users) || this.usersRender.users.length === 0) {\n\t\t\t\t// \talert('Please add at least one user.')\n\t\t\t\t// \tbtn.attr('disabled', null)\n\t\t\t\t// \treturn\n\t\t\t\t// }\n\n\t\t\t\tawait this.interactions.addProject({\n\t\t\t\t\tproject: {\n\t\t\t\t\t\tfilter: this.filter,\n\t\t\t\t\t\tclasses: this.classesTable!.rows.map((row, i) => {\n\t\t\t\t\t\t\treturn { label: row[1].value, color: row[2].color, key_shortcut: `Digit${i + 1}` }\n\t\t\t\t\t\t}),\n\t\t\t\t\t\tusers: this.usersRender?.users || []\n\t\t\t\t\t}\n\t\t\t\t})\n\t\t\t\tthis.dom.holder.selectAll('*').remove()\n\t\t\t\tnew SelectorTableRender(this.dom.holder, this.interactions, selections.data)\n\t\t\t})\n\t}\n\n\t/**** Uncomment before production */\n\t// private validateInput() {\n\t// \tconst invalidInfo = {\n\t// \t\tentries: [] as { dataType: string; reason: string }[],\n\t// \t\terrorMsg: 'Please clear all \"Data type: Class\" errors before applying changes.'\n\t// \t}\n\n\t// \t//Show user error if no filter is defined.\n\t// \tif (!this.filter) {\n\t// \t\tinvalidInfo.entries.push({ dataType: 'Filter', reason: 'No filter defined. Did you mean to add a filter?' })\n\t// \t}\n\t// \t//Check if all classes were deleted\n\t// \tconst classes = this.classesTable?.rows.map(row => row[1].value) || []\n\t// \tif (classes.length === 0) {\n\t// \t\tinvalidInfo.entries.push({ dataType: 'Class', reason: 'No classes defined. Did you mean to add a class?' })\n\t// \t}\n\t// \t//Check to see if any class is still a default class\n\t// \tconst unchangedClasses =\n\t// \t\tthis.classesTable?.rows\n\t// \t\t\t.filter(row => (row[1]?.value as string)?.startsWith('New class'))\n\t// \t\t\t.map(r => r[1]?.value as string) || []\n\t// \tfor (const c of unchangedClasses) {\n\t// \t\tinvalidInfo.entries.push({ dataType: 'Class', reason: `${c} is the default class name. Please rename.` })\n\t// \t}\n\n\t// \treturn invalidInfo\n\t// }\n}\n", "import { getCompInit, copyMerge, type RxComponent } from '#rx'\nimport { PlotBase } from '../PlotBase'\nimport type { MassState } from '#mass/types/mass'\nimport { getDefaultAIProjectAdminSettings } from './defaults'\nimport { ProjectReposity } from './repo/ProjectReposity'\nimport { ProjectAdminRender } from './view/ProjectAdminRender'\nimport { AIProjectAdminInteractions } from './interactions/AIProjectAdminInteractions'\nimport { CreateProjectRender } from './view/CreateProjectRender'\nimport { sayerror } from '#dom'\n\n/** This plot supports training AI models.\n * The UI allows users to create and manage projects. */\n\nclass AIProjectAdmin extends PlotBase implements RxComponent {\n\tstatic type = 'AIProjectAdmin'\n\tpublic type = 'AIProjectAdmin'\n\tprjtRepo: ProjectReposity\n\tprojects?: any[]\n\tprjtAdminUI?: ProjectAdminRender\n\tinteractions?: AIProjectAdminInteractions\n\n\tdom!: {\n\t\t[name: string]: any\n\t}\n\n\tconstructor(opts: any, api) {\n\t\tsuper(opts, api)\n\t\tthis.opts = opts\n\t\tthis.dom = {\n\t\t\tholder: opts.holder,\n\t\t\terrorDiv: opts.holder.append('div').style('margin', '3px').attr('class', 'sjpp-ai-prjt-admin-error')\n\t\t}\n\t\tif (opts.header) this.dom.header = opts.header\n\n\t\tthis.prjtRepo = new ProjectReposity()\n\t}\n\n\tgetState(appState: MassState) {\n\t\tconst config = appState.plots.find((p: any) => p.id === this.id)\n\t\tif (!config) {\n\t\t\tthrow `No plot with id='${this.id}' found. Did you set this.id before this.api = getComponentApi(this)?`\n\t\t}\n\t\treturn {\n\t\t\tconfig,\n\t\t\tvocab: appState.vocab,\n\t\t\tfilter: appState.termfilter.filter\n\t\t}\n\t}\n\n\tasync init(appState: MassState) {\n\t\tthis.interactions = new AIProjectAdminInteractions(this.app, this.id, this.prjtRepo)\n\n\t\ttry {\n\t\t\tthis.projects = await this.prjtRepo.getProjects(appState.vocab.genome, appState.vocab.dslabel)\n\t\t} catch (e: any) {\n\t\t\tconsole.error('Error initializing AIProjectAdmin:', e)\n\t\t\tthrow e\n\t\t}\n\t\tthis.prjtAdminUI = new ProjectAdminRender(this.dom, this.projects, this.interactions)\n\t\tthis.prjtAdminUI.renderProjectAdmin()\n\t}\n\n\tasync main() {\n\t\tconst state = structuredClone(this.state)\n\t\tconst config = state.config\n\t\tif (config.chartType != this.type) return\n\t\tconst project = config.settings.project\n\t\tif (!project) return\n\n\t\tif (!this.interactions) throw new Error('AIProjectAdminInteractions not initialized')\n\n\t\tthis.dom.holder.selectAll('.sjpp-deletable-ai-prjt-admin-div').remove()\n\n\t\tif (project.type === 'new') {\n\t\t\tconst terms = await this.prjtRepo.getTerms(this.app)\n\t\t\tif (!terms || terms.length === 0) {\n\t\t\t\tsayerror(this.dom.errorDiv, 'No metadata found.')\n\t\t\t\treturn\n\t\t\t}\n\t\t\tconst createProjectRender = new CreateProjectRender(this.dom, this.app, this.interactions)\n\t\t\tcreateProjectRender.render()\n\t\t}\n\n\t\t//launching project from embedded runpp()\n\t\tif (project.type == 'existing') {\n\t\t\tif (!project.name) {\n\t\t\t\tsayerror(this.dom.errorDiv, 'Project name not provided.')\n\t\t\t\treturn\n\t\t\t}\n\t\t\tif (!project.id) {\n\t\t\t\tconst existingProject = this.projects?.find(p => p.name === project.name)\n\t\t\t\tif (!existingProject) {\n\t\t\t\t\tsayerror(this.dom.errorDiv, `Project ${project.name} not found.`)\n\t\t\t\t\treturn\n\t\t\t\t}\n\t\t\t\t//No need to call dispatch. Save to the state and call the wsi viewer.\n\t\t\t\tawait this.app.save({\n\t\t\t\t\ttype: 'plot_edit',\n\t\t\t\t\tid: this.id,\n\t\t\t\t\tconfig: { settings: { project: { id: existingProject.id } } }\n\t\t\t\t})\n\t\t\t}\n\t\t\tawait this.interactions.launchViewer(this.dom.holder, [])\n\t\t}\n\t}\n}\n\nexport const aiProjectAdminInit = getCompInit(AIProjectAdmin)\nexport const componentInit = aiProjectAdminInit\n\nexport async function getPlotConfig(opts: any) {\n\tconst config = {\n\t\tchartType: 'AIProjectAdmin',\n\t\tsubfolder: 'aiProjectAdmin',\n\t\textension: 'ts',\n\t\thidePlotFilter: true, //Disable the filter in the sandbox header\n\t\tsettings: getDefaultAIProjectAdminSettings(opts.overrides)\n\t}\n\tif (opts.settings?.project && !opts.settings?.project?.type) {\n\t\t//If passing project from embedded runpp(), force type\n\t\topts.settings.project.type = 'existing'\n\t}\n\treturn copyMerge(config, opts)\n}\n"],
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+  "names": ["_", "i", "filter"]
+}

package/dist/{AppHeader-M3UEZL47.js → AppHeader-UJCDVA5M.js}

@@ -1,34 +1,34 @@
 import {
   makeButton,
   openSandbox
-} from "./chunk-CLZM6JZP.js";
+} from "./chunk-K425I4HV.js";
 import {
   get_tklst
-} from "./chunk-IFCRZ3ZF.js";
-import "./chunk-KAQ7D4ZC.js";
-import "./chunk-Z5FIAOM7.js";
+} from "./chunk-OM2NBG7A.js";
+import "./chunk-5SONICGN.js";
+import "./chunk-L32JPSES.js";
 import "./chunk-PRZWSBMA.js";
 import "./chunk-MKAF2BHB.js";
 import {
   urlmap_default
 } from "./chunk-RS3G3HE7.js";
-import "./chunk-AQBGWP7H.js";
+import "./chunk-P2XK5ENO.js";
 import {
   block_init_default
-} from "./chunk-JWVXJQ2J.js";
+} from "./chunk-FMSMQHM3.js";
 import {
   InputSearch,
   first_genetrack_tolist,
   newSandboxDiv,
   sayerror,
   throwMsgWithFilePathAndFnName
-} from "./chunk-2EO4IS5N.js";
+} from "./chunk-AP2Y5RCJ.js";
 import {
   string2pos
 } from "./chunk-HJ6L54YS.js";
 import {
   dofetch3
-} from "./chunk-D6352YQT.js";
+} from "./chunk-WNOODTLM.js";
 import "./chunk-GS2VLJGG.js";
 import {
   defaultcolor
@@ -211,7 +211,7 @@ async function findgene2paint(str, app, genomename, jwt) {
       debugmode: app.debugmode
     };
     first_genetrack_tolist(g, par2.tklst);
-    import("./block-SE6H35TV.js").then((b) => new b.Block(par2)).catch((err) => {
+    import("./block-O7K3KLC4.js").then((b) => new b.Block(par2)).catch((err) => {
       app.error0(err);
     });
     return;
@@ -797,7 +797,7 @@ var AppHeader = class _AppHeader {
         debugmode: app.debugmode
       };
       first_genetrack_tolist(g, par.tklst);
-      import("./block-SE6H35TV.js").then((b) => new b.Block(par));
+      import("./block-O7K3KLC4.js").then((b) => new b.Block(par));
       app.drawer.dispatch({ type: "is_apps_btn_active", value: false });
     });
     return g_browser_btn;
@@ -810,4 +810,4 @@ var AppHeader = class _AppHeader {
 export {
   AppHeader
 };
-//# sourceMappingURL=AppHeader-M3UEZL47.js.map
+//# sourceMappingURL=AppHeader-UJCDVA5M.js.map

package/dist/{BoxPlot-SQMAIQZM.js → BoxPlot-6PLYHW57.js}

@@ -4,17 +4,17 @@ import {
   componentInit,
   getDefaultBoxplotSettings,
   getPlotConfig
-} from "./chunk-IWVUWJD7.js";
-import "./chunk-ZOIQ53ZV.js";
-import "./chunk-IOPEUV4K.js";
+} from "./chunk-CFI3KZTJ.js";
+import "./chunk-372TBTIQ.js";
+import "./chunk-L53UMFEW.js";
 import "./chunk-62MOBW7X.js";
-import "./chunk-BBJWY4W3.js";
-import "./chunk-LQJLKAVM.js";
-import "./chunk-OFI7MMJR.js";
+import "./chunk-OWIYRDIY.js";
+import "./chunk-ATREFKFY.js";
+import "./chunk-FSYQRJA7.js";
 import "./chunk-GZ2B634M.js";
-import "./chunk-2EO4IS5N.js";
+import "./chunk-AP2Y5RCJ.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-D6352YQT.js";
+import "./chunk-WNOODTLM.js";
 import "./chunk-GS2VLJGG.js";
 import "./chunk-FWKK7FTI.js";
 import "./chunk-5MWX5HUZ.js";
@@ -41,4 +41,4 @@ export {
   getDefaultBoxplotSettings,
   getPlotConfig
 };
-//# sourceMappingURL=BoxPlot-SQMAIQZM.js.map
+//# sourceMappingURL=BoxPlot-6PLYHW57.js.map

package/dist/{CorrelationVolcano-HCW6LQRF.js → CorrelationVolcano-43UOXTTZ.js}

@@ -1,10 +1,10 @@
 import {
   PlotBase
-} from "./chunk-BBJWY4W3.js";
+} from "./chunk-OWIYRDIY.js";
 import {
   controlsInit
-} from "./chunk-LQJLKAVM.js";
-import "./chunk-OFI7MMJR.js";
+} from "./chunk-ATREFKFY.js";
+import "./chunk-FSYQRJA7.js";
 import "./chunk-GZ2B634M.js";
 import {
   LegendCircleReference,
@@ -14,9 +14,9 @@ import {
   fillTwLst,
   table2col,
   to_svg
-} from "./chunk-2EO4IS5N.js";
+} from "./chunk-AP2Y5RCJ.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-D6352YQT.js";
+import "./chunk-WNOODTLM.js";
 import {
   termType2label
 } from "./chunk-GS2VLJGG.js";
@@ -613,4 +613,4 @@ export {
   getDefaultCorrVolcanoSettings,
   getPlotConfig
 };
-//# sourceMappingURL=CorrelationVolcano-HCW6LQRF.js.map
+//# sourceMappingURL=CorrelationVolcano-43UOXTTZ.js.map

package/dist/{DifferentialAnalysis-XQ3SQ6TG.js → DifferentialAnalysis-BQ3DBVSE.js}

@@ -1,25 +1,25 @@
 import {
   getDefaultGseaSettings
-} from "./chunk-NTLRCEC2.js";
-import "./chunk-TMO22TT3.js";
+} from "./chunk-XMHSNAFP.js";
+import "./chunk-GUENWMQ2.js";
 import {
   importPlot
-} from "./chunk-IOPEUV4K.js";
+} from "./chunk-L53UMFEW.js";
 import {
   getDefaultVolcanoSettings,
   validateVolcanoSettings
 } from "./chunk-62MOBW7X.js";
 import {
   PlotBase
-} from "./chunk-BBJWY4W3.js";
-import "./chunk-LQJLKAVM.js";
-import "./chunk-OFI7MMJR.js";
+} from "./chunk-OWIYRDIY.js";
+import "./chunk-ATREFKFY.js";
+import "./chunk-FSYQRJA7.js";
 import "./chunk-GZ2B634M.js";
 import {
   Tabs
-} from "./chunk-2EO4IS5N.js";
+} from "./chunk-AP2Y5RCJ.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-D6352YQT.js";
+import "./chunk-WNOODTLM.js";
 import {
   TermTypes,
   termType2label
@@ -234,4 +234,4 @@ export {
   componentInit,
   getPlotConfig
 };
-//# sourceMappingURL=DifferentialAnalysis-XQ3SQ6TG.js.map
+//# sourceMappingURL=DifferentialAnalysis-BQ3DBVSE.js.map

package/dist/{Disco-6TM5UG4F.js → Disco-LWTFHH6G.js}

@@ -1,6 +1,6 @@
 import {
   configUiInit
-} from "./chunk-OFI7MMJR.js";
+} from "./chunk-FSYQRJA7.js";
 import {
   topBarInit
 } from "./chunk-GZ2B634M.js";
@@ -10,11 +10,11 @@ import {
   renderTable,
   svgLegend,
   table2col
-} from "./chunk-2EO4IS5N.js";
+} from "./chunk-AP2Y5RCJ.js";
 import "./chunk-HJ6L54YS.js";
 import {
   dofetch3
-} from "./chunk-D6352YQT.js";
+} from "./chunk-WNOODTLM.js";
 import "./chunk-GS2VLJGG.js";
 import {
   bplen,
@@ -178,7 +178,7 @@ async function makeSvgraph(fusion, div, genome) {
   await getGm(svpair.a, genome.name, fusion.source.gene);
   await getGm(svpair.b, genome.name, fusion.target.gene);
   wait.remove();
-  const _ = await import("./svgraph-GT6MK7G6.js");
+  const _ = await import("./svgraph-XD6FPLLE.js");
   _.default({
     pairlst: [svpair],
     genome,
@@ -277,7 +277,7 @@ var DiscoInteractions = class {
           }
         ]
       };
-      const _ = await import("./block.init-5BOM6MCL.js");
+      const _ = await import("./block.init-JHNEY5SD.js");
       await _.default(arg);
     };
     this.colorScaleNumericInputsCallback = async (obj) => {
@@ -3086,4 +3086,4 @@ export {
   discoInit,
   getPlotConfig
 };
-//# sourceMappingURL=Disco-6TM5UG4F.js.map
+//# sourceMappingURL=Disco-LWTFHH6G.js.map

package/dist/{Disco.UI-JW5ID57Z.js → Disco.UI-C7D2QSG7.js}

@@ -1,6 +1,6 @@
 import {
   launch
-} from "./chunk-B77X5QZM.js";
+} from "./chunk-UY5TL6PD.js";
 import {
   makeBtn,
   makeFileUpload,
@@ -9,20 +9,20 @@ import {
   makeResetBtn,
   makeTextAreaInput
 } from "./chunk-CUSG5PZE.js";
-import "./chunk-7VR34ZI2.js";
-import "./chunk-D5WT6TIW.js";
+import "./chunk-Y5XPNXAH.js";
+import "./chunk-SKPU5PKR.js";
 import "./chunk-SKMFMGCD.js";
 import "./chunk-PBJFLQGL.js";
-import "./chunk-ZOIQ53ZV.js";
-import "./chunk-IOPEUV4K.js";
+import "./chunk-372TBTIQ.js";
+import "./chunk-L53UMFEW.js";
 import "./chunk-62MOBW7X.js";
 import {
   Tabs,
   appear,
   sayerror
-} from "./chunk-2EO4IS5N.js";
+} from "./chunk-AP2Y5RCJ.js";
 import "./chunk-HJ6L54YS.js";
-import "./chunk-D6352YQT.js";
+import "./chunk-WNOODTLM.js";
 import "./chunk-GS2VLJGG.js";
 import "./chunk-FWKK7FTI.js";
 import "./chunk-5MWX5HUZ.js";
@@ -235,4 +235,4 @@ function backButton(holder, genomes) {
 export {
   init_discoplotUI
 };
-//# sourceMappingURL=Disco.UI-JW5ID57Z.js.map
+//# sourceMappingURL=Disco.UI-C7D2QSG7.js.map