@sjcrh/proteinpaint-client 2.163.0 → 2.163.1

package/dist/{chunk-FXIUCI43.js → chunk-2K4FQMFC.js}

@@ -1,14 +1,14 @@
 import {
   listSamples
-} from "./chunk-FI4HYWMX.js";
+} from "./chunk-55UVGWSY.js";
 import {
   getSamplelstFilter
-} from "./chunk-XHH6UMID.js";
+} from "./chunk-ZOIQ53ZV.js";
 import {
   DownloadMenu,
   filterJoin,
   getFilterItemByTag
-} from "./chunk-ETVDSVMI.js";
+} from "./chunk-2EO4IS5N.js";
 import {
   TermTypes
 } from "./chunk-GS2VLJGG.js";
@@ -300,4 +300,4 @@ function createTvsTerm(term, tvslst) {
 export {
   setInteractivity
 };
-//# sourceMappingURL=chunk-FXIUCI43.js.map
+//# sourceMappingURL=chunk-2K4FQMFC.js.map

package/dist/{chunk-6SJG3AVK.js → chunk-33PB57HN.js}

@@ -2,7 +2,7 @@ import {
   addNewGroup,
   getFilter,
   getSamplelstTW
-} from "./chunk-XHH6UMID.js";
+} from "./chunk-ZOIQ53ZV.js";
 import {
   fillTermWrapper,
   newSandboxDiv,
@@ -10,10 +10,10 @@ import {
   rgb2hex,
   table2col,
   termsettingInit
-} from "./chunk-ETVDSVMI.js";
+} from "./chunk-2EO4IS5N.js";
 import {
   dofetch3
-} from "./chunk-3EPYN27X.js";
+} from "./chunk-D6352YQT.js";
 import {
   NUMERIC_DICTIONARY_TERM,
   TermTypes,
@@ -234,7 +234,7 @@ function setInteractivity(self) {
         const menuDiv = self.dom.clickMenu.d.append("div").attr("class", "sja_menuoption sja_sharp_border").attr("data-testid", "sjpp-ssgp-menu-btn").text(k).on("click", async (event3) => {
           const sandbox = newSandboxDiv(self.opts.plotDiv || select_default(self.opts.holder.node().parentNode));
           sandbox.header.text(sample.sample_id);
-          await (await import("./plot.ssgq-GDJZGDJF.js")).plotSingleSampleGenomeQuantification(
+          await (await import("./plot.ssgq-64HDTBKI.js")).plotSingleSampleGenomeQuantification(
             self.state.termdbConfig,
             self.state.vocab.dslabel,
             k,
@@ -252,7 +252,7 @@ function setInteractivity(self) {
       const menuDiv = self.dom.clickMenu.d.append("div").attr("class", "sja_menuoption sja_sharp_border").attr("data-testid", "oncoMatrix_termLabel_disco_button").text("Disco plot").on("click", async (event3) => {
         const sandbox = newSandboxDiv(self.opts.plotDiv || select_default(self.opts.holder.node().parentNode));
         sandbox.header.text(sample.sample_id);
-        (await import("./plot.disco-43OSDNJU.js")).default(
+        (await import("./plot.disco-XAWVIYPT.js")).default(
           self.state.termdbConfig,
           self.state.vocab.dslabel,
           sample,
@@ -278,7 +278,7 @@ function setInteractivity(self) {
         menuDiv.on("click", async (_) => {
           const sandbox = newSandboxDiv(self.opts.plotDiv || select_default(self.opts.holder.node().parentNode));
           sandbox.header.text(sample.sample_id);
-          (await import("./plot.dzi-VROBGXM6.js")).default(
+          (await import("./plot.dzi-A4CZVKZK.js")).default(
             self.state.vocab.dslabel,
             sandbox.body,
             self.app.opts.genome,
@@ -531,7 +531,7 @@ function setTermActions(self) {
     });
   };
   self.getMenuOptions = function(t) {
-    return self.config.chartType == "hierCluster" && t.grp.type === "hierCluster" ? "{remove,}" : t.tw.term.type == "geneVariant" ? "{edit,replace,remove}" : "*";
+    return self.config.chartType == "hierCluster" && t.grp.type === "hierCluster" ? "{remove,}" : t.tw.term.type == "geneVariant" ? "{edit,replace,remove}" : t.grp.type == "compositePercentage" ? {} : "*";
   };
   self.showTermMenu = async function(event2) {
     const t = event2.target.__data__;
@@ -550,22 +550,26 @@ function setTermActions(self) {
       )
     );
     termMenuWaitDiv.remove();
-    self.dom.shortcutDiv = self.dom.menutop.append("div").style("z-index", 1e4);
-    self.showShortcuts(t, self.dom.shortcutDiv);
+    if (t.grp.type !== "compositePercentage") {
+      self.dom.shortcutDiv = self.dom.menutop.append("div").style("z-index", 1e4);
+      self.showShortcuts(t, self.dom.shortcutDiv);
+    }
     self.dom.twMenuDiv = self.dom.menutop.append("div");
     const labelEditDiv = self.dom.twMenuDiv.append("div").style("text-align", "center");
-    labelEditDiv.append("span").text(`${l.Term} `);
+    if (t.grp.type !== "compositePercentage") labelEditDiv.append("span").text(`${l.Term} `);
     const twlabel = t.tw.label || t.tw.term.name;
     const vartype = t.tw.term.type == "geneVariant" || t.tw.term.type == TermTypes.GENE_EXPRESSION ? "gene" : t.tw.term.type == TermTypes.METABOLITE_INTENSITY ? "metabolite" : "variable";
-    self.dom.twLabelInput = labelEditDiv.append("input").attr("type", "text").attr("size", twlabel.length + 3).attr("aria-label", `Type to edit the ${vartype} label`).style("padding", "1px 5px").style("text-align", "center").property("value", twlabel).on("input", () => {
-      const value = self.dom.twLabelInput.property("value");
-      self.dom.twLabelInput.attr("size", value.length + 3);
-      self.dom.twLabelEditBtn.style("display", value.trim() === twlabel ? "none" : "inline");
-    });
-    self.dom.twLabelEditBtn = labelEditDiv.append("button").style("display", "none").style("margin-left", "5px").html("submit").on("click", () => {
-      if (twlabel != self.dom.twLabelInput.property("value").trim()) self.updateTermLabel();
-      self.dom.tip.hide();
-    });
+    if (t.grp.type !== "compositePercentage")
+      self.dom.twLabelInput = labelEditDiv.append("input").attr("type", "text").attr("size", twlabel.length + 3).attr("aria-label", `Type to edit the ${vartype} label`).style("padding", "1px 5px").style("text-align", "center").property("value", twlabel).on("input", () => {
+        const value = self.dom.twLabelInput.property("value");
+        self.dom.twLabelInput.attr("size", value.length + 3);
+        self.dom.twLabelEditBtn.style("display", value.trim() === twlabel ? "none" : "inline");
+      });
+    if (t.grp.type !== "compositePercentage")
+      self.dom.twLabelEditBtn = labelEditDiv.append("button").style("display", "none").style("margin-left", "5px").html("submit").on("click", () => {
+        if (twlabel != self.dom.twLabelInput.property("value").trim()) self.updateTermLabel();
+        self.dom.tip.hide();
+      });
     if (vartype == "gene") {
       if (t.tw.term.type == "geneVariant") {
         self.dom.gbButton = labelEditDiv.append("button").style("text-align", "center").html("Lollipop").attr("data-testid", "oncoMatrix_cell_lollipop_button").on("click", async () => {
@@ -600,7 +604,7 @@ function setTermActions(self) {
         self.dom.tip.hide();
       });
     }
-    if (t.grp?.type !== "hierCluster" && t.tw?.q?.mode == "continuous" && t.tw.term.type != "survival" && t.tw.q.convert2ZScore != true) {
+    if (t.grp?.type !== "hierCluster" && t.tw?.q?.mode == "continuous" && t.tw.term.type != "survival" && t.tw.term.type != "compositePercentage" && t.tw.q.convert2ZScore != true) {
       rowHeightColorEditDiv.append("span").text("Bar Color");
       self.dom.twRowColorInput = rowHeightColorEditDiv.append("input").attr("type", "color").attr("aria-label", `change the bar color`).style("padding", "1px 5px").attr("value", twSettings.contBarColor).on("change", async () => {
         const color = self.dom.twRowColorInput.node().value;
@@ -928,7 +932,7 @@ function setTermActions(self) {
         usecase.detail = "term";
       }
     }
-    const termdb = await import("./app-IPBHIN3F.js");
+    const termdb = await import("./app-Y7BMGOPO.js");
     holder.selectAll("*").remove();
     termdb.appInit({
       holder: holder.append("div"),
@@ -1243,7 +1247,7 @@ function setSampleGroupActions(self) {
     label2.append("input").attr("type", "radio").attr("name", radioName).attr("value", "term0");
     label2.append("span").html(" divide");
     self.dom.menubody.append("div").style("padding-bottom", "10px").html(`the selected survival variable below:`);
-    const termdb = await import("./app-IPBHIN3F.js");
+    const termdb = await import("./app-Y7BMGOPO.js");
     termdb.appInit({
       holder: self.dom.menubody.append("div"),
       vocabApi: self.app.vocabApi,
@@ -2153,7 +2157,8 @@ function setLengendActions(self) {
     const controlLabels = self.settings.matrix.controlLabels;
     const div = menuGrp.d.append("div");
     const addMenuOptions = (targetItemData) => {
-      if (!targetItemData.dt || self.type !== "hierCluster" || legendFilterIndex !== -1) {
+      const term2 = self.termOrder.find((t) => t.tw.$id == targetItemData.$id)?.tw?.term;
+      if (term2?.type !== "compositePercentage" && (!targetItemData.dt || self.type !== "hierCluster" || legendFilterIndex !== -1)) {
         div.append("div").attr("class", "sja_menuoption sja_sharp_border").text(
           targetItemData.dt ? legendFilterIndex == -1 ? `Hide ${controlLabels.samples} with ${mclass[targetItemData.key].label}` : `Show ${controlLabels.samples} with ${mclass[targetItemData.key].label}` : legendFilterIndex == -1 ? "Hide" : "Show"
         ).on("click", () => {
@@ -2179,9 +2184,9 @@ function setLengendActions(self) {
               };
               self.config.legendValueFilter.lst.push(filterNew);
             } else {
-              const term2 = self.termOrder.find((t) => t.tw.$id == targetItemData.$id).tw.term;
-              if (term2.type == "categorical" || term2.type == "survival") {
-                term2.$id = targetItemData.$id;
+              const term3 = self.termOrder.find((t) => t.tw.$id == targetItemData.$id).tw.term;
+              if (term3.type == "categorical" || term3.type == "survival") {
+                term3.$id = targetItemData.$id;
                 const filterGrpIndex = self.config.legendValueFilter.lst.findIndex(
                   (l) => l.legendGrpName == targetItemData.termid
                 );
@@ -2191,7 +2196,7 @@ function setLengendActions(self) {
                     type: "tvs",
                     tvs: {
                       isnot: true,
-                      term: term2,
+                      term: term3,
                       values: [{ key: targetItemData.key }]
                     }
                   };
@@ -2199,14 +2204,14 @@ function setLengendActions(self) {
                 } else {
                   self.config.legendValueFilter.lst[filterGrpIndex].tvs.values.push({ key: targetItemData.key });
                 }
-              } else if (isNumericTerm(term2)) {
-                term2.$id = targetItemData.$id;
+              } else if (isNumericTerm(term3)) {
+                term3.$id = targetItemData.$id;
                 const filterNew = {
                   legendGrpName: targetItemData.termid,
                   type: "tvs",
                   tvs: {
                     isnot: true,
-                    term: term2,
+                    term: term3,
                     ranges: [self.data.refs.byTermId[targetItemData.$id].bins.find((b) => targetItemData.key == b.name)]
                   }
                 };
@@ -2216,8 +2221,8 @@ function setLengendActions(self) {
           } else {
             if (targetItemData.dt) self.config.legendValueFilter.lst.splice(legendFilterIndex, 1);
             else {
-              const term2 = self.termOrder.find((t) => t.tw.$id == targetItemData.$id).tw.term;
-              if (term2.type == "categorical" || term2.type == "survival") {
+              const term3 = self.termOrder.find((t) => t.tw.$id == targetItemData.$id).tw.term;
+              if (term3.type == "categorical" || term3.type == "survival") {
                 const filterGrpIndex = self.config.legendValueFilter.lst.findIndex(
                   (l) => l.legendGrpName == targetItemData.termid
                 );
@@ -2257,7 +2262,7 @@ function setLengendActions(self) {
         });
       }
       if (targetItemData.isLegendItem) {
-        if (targetItemData.dt && legendFilterIndex == -1) {
+        if (targetItemData.dt && legendFilterIndex == -1 && term2?.type !== "compositePercentage") {
           div.append("div").attr("class", "sja_menuoption sja_sharp_border").text(`Do not show ${mclass[targetItemData.key]?.label}`).on("click", () => {
             menuGrp.hide();
             const filterNew = {
@@ -2296,16 +2301,16 @@ function setLengendActions(self) {
             });
           });
         }
-        if (!targetItemData.dt) {
+        if (!targetItemData.dt && term2?.type !== "compositePercentage") {
           div.append("div").attr("class", "sja_menuoption sja_sharp_border").text("Show only").on("click", () => {
             menuGrp.hide();
-            const term2 = self.termOrder.find((t) => t.tw.$id == targetItemData.$id)?.tw?.term;
+            const term3 = self.termOrder.find((t) => t.tw.$id == targetItemData.$id)?.tw?.term;
             const legendGrp = self.legendData.find((lg) => lg.name == targetItemData.termid) || self.legendData.find((lg) => lg.$id == targetItemData.$id);
             self.config.legendValueFilter.lst = self.config.legendValueFilter.lst.filter(
               (l) => l.legendGrpName !== targetItemData.termid
             );
-            if (term2.type == "categorical" || term2.type == "survival") {
-              term2.$id = targetItemData.$id;
+            if (term3.type == "categorical" || term3.type == "survival") {
+              term3.$id = targetItemData.$id;
               for (const l of legendGrp.items) {
                 if (l.key == targetItemData.key) continue;
                 const filterGrpIndex = self.config.legendValueFilter.lst.findIndex(
@@ -2317,7 +2322,7 @@ function setLengendActions(self) {
                     type: "tvs",
                     tvs: {
                       isnot: true,
-                      term: term2,
+                      term: term3,
                       values: [{ key: l.key }]
                     }
                   };
@@ -2326,8 +2331,8 @@ function setLengendActions(self) {
                   self.config.legendValueFilter.lst[filterGrpIndex].tvs.values.push({ key: l.key });
                 }
               }
-            } else if (isNumericTerm(term2)) {
-              term2.$id = targetItemData.$id;
+            } else if (isNumericTerm(term3)) {
+              term3.$id = targetItemData.$id;
               for (const l of legendGrp.items) {
                 if (l.key == targetItemData.key) continue;
                 const filterNew = {
@@ -2335,7 +2340,7 @@ function setLengendActions(self) {
                   type: "tvs",
                   tvs: {
                     isnot: true,
-                    term: term2,
+                    term: term3,
                     ranges: [self.data.refs.byTermId[targetItemData.$id].bins.find((b) => l.key == b.name)]
                   }
                 };
@@ -2350,7 +2355,7 @@ function setLengendActions(self) {
             });
           });
         }
-        if (!targetItemData.dt) {
+        if (!targetItemData.dt && term2?.type !== "compositePercentage") {
           div.append("div").attr("class", "sja_menuoption sja_sharp_border").text("Show all").on("click", () => {
             menuGrp.hide();
             self.config.legendValueFilter.lst = self.config.legendValueFilter.lst.filter(
@@ -2704,4 +2709,4 @@ export {
   getConfigForShowAll,
   showAll
 };
-//# sourceMappingURL=chunk-6SJG3AVK.js.map
+//# sourceMappingURL=chunk-33PB57HN.js.map